SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1331

Length: 1447 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1331

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type A response regulator RR1 n=1 Tax=Phaseolus vulgaris RepID=B0YGG5_PHAVU	-	-	4.0e-38	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	type a response regulator	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	71%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	71%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	71%
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	71%
Blast2go	response to stress	GO:0006950	Biological Process	71%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	71%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	71%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	71%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	cytoplasm	GO:0005737	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWL1

Fln msg:

Fln protein: MEEDGVKITFGDSQAITVGEAATDGHEMHVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHATATVCSNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPVQRDDIKKITGYIKVSKHVATTPICRKRKVSSVVLAGKNSERRPRISGVTVA*

Protein Length: 198

Fln nts: ACAATGGGGGATATGTCGTGGCGTATTTGGGGATCTCAGGAATATGCGACGGCAAATTTTGGGAAAATATTTGTTGGCAGGTACTTTATGGCATGCTATGGGATTGGATCGCGCGACCTTTAGTGGATCCTCTCACGCTTTTCGTTCCCCAATAATAAAGAAAGAACTCGGACGCTTCAGGCTCAAGCTTTTGTTACAGTGTGTTCGCGATGAGATAACAACGAGGACTTGCTTTGCAGGCCTGATAAGAGGGTTCGAAGCCATTTCGCTTAGGGTTTTTGAAGGACGGCGCTGAACTGGACAGAGTGACGGTCGTCAGTTCGATTCCCGGCGGTGGCGATTCTGGTTTAAAAAGTAAAGCGGGTGTAATTTTCTGCCCTCCTATAAGAAGAAAACTTGATGGATACGATTTTTCGTTATATCTTTGCGCCGTTGCCGTGACCTGCAATGTACAGCAGTACGAGAGTCGCGGCTGTTTGGAAAGCCTAGTAGGCGGGATATTATTTCGGCCGCGACTGAGTCTTGCCTGTCTGTGGCAATC_-_ATGGAAGAAGACGGAGTGAAAATCACTTTTGGCGATTCGCAGGCGATCACTGTGGGGGAAGCAGCGACCGATGGCCATGAGATGCATGTTTTAGCCGTAGACGATTGTCGTGTTGATAGAATGGTCGTTGAGAGACTGCTGCGGTCAGATTCTGTGAAAGTCACTGCCGTGGACAGTGCTGCCAAGGCGCTTGAACTTCTTGGAGTAAATAAAGAACACGCGACAGCCACTGTCTGCAGTAATCCATTGAAGTTCAGTTTGATTATCACAGATTATTGCATGCCAGAACTGACGGGCTACGATCTCCTCAAGAGACTCAAGGAAATCAAGGGTTTGAAGGAGATACCTGTAATTATAATGTCATCAGAGAATGTGCCACAGCGAATTCAAAGGTGTTTAGATGAAGGAGCCGAAGACTTCATTGTCAAACCCGTGCAACGGGATGACATCAAGAAGATAACGGGGTATATCAAGGTATCGAAACACGTGGCTACCACGCCTATATGTAGAAAACGGAAGGTTTCATCCGTCGTGTTAGCGGGAAAAAACTCAGAGCGACGACCTCGAATCAGTGGCGTTACAGTTGCTTGA___ATCTGACTGGTTTGCTCGCATTTTAAAGAACAGGGCATCTGACCATGTAAAGTGTTGTTCGAGGTGTTGCAGTATTTTCTTTGAATTTCGTGAAATTTATAAGTCGAGTGATTCTCTGAGAGGGTTTACAACAACTTTACTGAATGTTCGTTTTCCTGTAATAATGATGGCGGCCGTTTCTGTTTTATTTTTTGAGTTTCGCTGGGCGTTTCTGCTTATTGTAAATGAACTCTGTATGTGGAGGTCTTTGATATCAACACGGAAGAAGTTGCGTATTGTATCCCTAATATTGCATCCATTTTTATTGCTATTAAG

Fln Alignment:

Contig1331___EMHVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHATATVCSNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPVQRDDIKKITGYIKVSKHVATT--------PICRKRKVSSVVLAGKNSERRPRISGVT
A9NWL1______________EMHVLAVDDCLIERKVIEKLLKTNFFKVTTVDSAERALEVLGFHEEQSTCAA-SNAFKVNMIITDYCMPGMTGYDLLKKVQETKCLKEIPVVIISSENVPQRITSCLAGGAKDFIIKPLKLADVTKLKGHIKPPKDVVSTSANASSSGPVSSKRKISSGRARGKMSERRPRVGGLT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
269	28	71			1.0
278	10			70	0.999998
280			10	90	0.90298
281			10	90	0.90298
282			10	90	0.90298
417		50		50	1.0
516		20	80		0.999996
601			90	10	0.90298
614	90			10	0.90298
616		10	90		0.90298
651		11		88	0.923564
683		14		85	0.993533
700	83			16	0.994512
742	16	83			0.994512
744			16	83	0.994512
804	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain