SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1300

Length: 3428 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1300
ATGGGACGAAGGAAAATATCTTCGAACTCTTCCTCCGCCTCAACCAAAACCCTACATGTCCCGACGAAGGAAAATATCTTCGAATTCTTCCTCCCCCTCAAGTCTCCACGTTGTCCGCAGATCGACAGCTTGGGGAAGCCCTGCACTGTTGGGTTGGAGAGTGAGTTTGAAGTTAGCTACTAATCCACAATGGCGGGACGTCTTGGAGGAGCGCTTTTGCTATACCCTACAGTTTCAACCATCAACAACATTTCGTGTAAAAATCTCAATCCTTGCTTTGCCTCTCAAGCATTCACGCTTTCTCCGAGTGCTTTTTCTTTAAATTTCCATATGTTTAGTATTGTAAGGAACGCCAAATTTACCCTGAGGCATTTCAATCCAAGTTCCAGAAAGAATAATTCAGTTGTTTTGGGTACCAGAAATCACTCAAGCCGCTCGTTTCGTTCTGAACGGGGTCGGGACGACGAACCTATCCCAGCTTGGCGAAGAACCCCTAAAACAACGACTTTTAACGCAAAAAGTACAAATAGACCAGAATCCAAAAGTCTGGTTGAAGAGGAACTGGATATGGATAACTTGTTTGGAAAACGGGGTGCATCTATGTCTGGTCGGTCGAATCCTGGTAGAAATGATTATAATGATGGATCGTCGAGGAATTATAGAGGCAATGATGTCTCTGCAAGGGGCAGACAAGGAGGGAAAGGCTCTTTTAATGGGGTCTCTCCAAGGGGCAGGCGAGGAGGGAATAGCTCGTTTAATGGGGTCTCTGCAAGGGGCAGACGAGGTGGGGGTGTCTTGTCGGACAGAAGGGGCTCTAATCCATCTGGTAGGCAAGCACTGGAAAGTAGTGATGACGAGGATGAAGATGAATCTGAAGATGTCTGGGAGAACGAAACTTCTTCGTCTCCTCGAAGATACCACAAAACAAATGATTTTGACAAAATAAATAGTAATAGAAGGCAGACCCAATCCAAACGTCCGGCTGAAGAGGAACTGGATATGGATAACTGGTTTGATAAGCGGGGTATATCTATGTCTGGTCGGCCGAAGCGCGGCAGAAATAATGATAATGATGGATTATCAAGGACTTCTAGAGGTAATGGGGTCTCTGCAAGAGGCGGACGAGGTAGTGGGGTCTCTGCAAGAGGCTCTAAATCCTCTGGTAGGCAAGTACTGAAGATCAGTGATGACGAAGACGAAGACGAGTCTGAAGATGAAGATAAAGATGATGAATTTGATGCTGTTACGGATGTTACATCGAGTAGCGAAGATGATGATGAATTTGATTCAGCGAAGCCTGTGGGGCACAAGCAGCCAATGTTGAGTGCTGTTCAAAAAGCGGATCCAAAGACAAGCAGTGTGAAGGTTACTGGGGATGCTAATTATTTGAGCCAGTCAAGATTTGACCAGCACAATATCTCACCATTGACACTCAAGGCAACCAATGCAGTGGGGTATGAGCGCATGACCATTGTGCAAGAAGCAACTCTTCCATCTATTCTCAAAGGCAAGGATGTGTTGGCCAAGGCTAAAACTGGCACCGGCAAGACAGTAGCATTTCTGCTTCCTGCTATTGAGGTGATAGTGAAGTCACCACCGGTCCTCCGAGATGAGAAAAGTCCGCCTATTCTTGTTCTTGTCATTTGTCCCACTCGGGAACTTGCAAGTCAAGCTGCTGCCGAGGCCAATGTTTTGTTGAAATTCCATGCAAATATTGGTGTACAAGTAGTTACTGGGGGCACTAACTTACCAAAAGAACAGAAACGACTACAAACAAATCCTTGCCAGATATTAGTGGCCACTCCTGGAAGGCTTCGGGACCATATTGAGAATACCCCTGGTTTCTCAAGGCGTTTGTTGGGTGTGAAAGTGCTTGTACTTGATGAAGCTGACCATTTGCTAGATATGGGGTTCCGTAAGGATCTTGATAAGATAATTGCTGCTGTGCCTAAAGAGAGGCAGACACTCCTATTTTCAGCTACAGTTCCAGAAGAGGTTCACAAAGTATCCCAGATTGCTTTAAAACGGGATCATGAGTTTATTAATACAGTTGAAGAGGGCAGTGAGGAAACACACTCAAAGGTTTGTCAGTCATCAATTATTGCTTCACATGAGAGGCATTTCAACATTGTTTATGCTGTTCTGAAAGGGCACATCTCACAGGATCCTGACTACAAGGTCCTTATTTTTTGTACAACTGCAAGGGTTACTAGACTTGTGGCTGAACTTCTGGCGGAGTTGAAATTTAATGTCCGTGAGATTCACTCAAGAAAGTCTCAGGGTTATCGGACACGTATCTCTAATGAGTTTAGGATTTCAAAAGGTCTTATACTTGTTACTTCAGATGTCTCAGCTCGTGGAGTTGATTATCCTGATGTCACTCTTGTTGTTCAGATGGGAATACCTTCTGACCGACAACAGTACATACACCGACTTGGCAGAACTGGACGCAAGGGTAAGGAGGGACAGGGTATTTTGTTACTTGCGCCGTGGGAGGAGTACTTCTTAAATAGTGTGAAAGATTTACCCATCACAAAGGATCCAGTACCTCTTCTAGATTCAGAAACGAATTTGAAGGTGCAGCGAGCACTATCCCATATTGACTTGAACGATAAAGAATCTGCATATCAAGCATGGCTTGGATATTACAATTCTGTGAAACAGATTGGACGAGATAAGAGTAGGCTTGTTGAACTTGCAAATGAATTTAGTCGTTCTATGGGATTGGACAAACCACCAGCAATTGCAACATCAACCCTGTCCAAAATGGGCCTGAAGAATGTTCCAGGAATACGGACAAAATAGTGGGCAAGTTTGGATGGTGCATTATTCTGCTACAGTCATGATAATGGCCTTCTGAGAGCAGTCTGCTTTACACCGATCATTGGGCATGGAATCTAGCCATGGAATTTCCCTCACTCTACCAAGTCAGCTTGTCTCAGTGCTAAGCTATCACAAGTGTCCCTCGGATTTCATTTGCACTTATTATATGGGGCAAGATGCGGAAGTGTGTACATTCATAGAGGCTTTTGTAATGTGTCAATGTTCCCATAGAGAAGCGGGGATTGTTTGAATCAATCCTTACTATTTCAAGAATGTAATGTTTGGAGAAATACGATGCAGTCAAACCAGACCTTTGCAATTTTGGTGTTCCAAAACTATAATTTGAATTTTGAAGCTCCAATTCCAGTGCAGAACCTTTGGGCTGTTGCACATTAGTATTCTTTAATAGGACCTTGTTTAGTGGACTTGAACATTGTCAGTCAGGTAATCTATTTTGTTTTACTATCTGTAGTTATTATTATTGTCCAATTCAAATTGCTCTGTATTTCCACGTCTTCAATATTTCTTGTGAGTGGTTAAGAGTTTCTTGTGAGTTGTTATGAGTTTCTGATTGCTTTTCTTCACGAAGCTCCTTTTGTGGCAGT

Ace file of the UniGene sp_v2.0_unigene1300 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] sp\|Q9FNM7.2\|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26 gb\|AED91329.1\| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	rna helicase	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	85%
Blast2go	response to cold	GO:0009409	Biological Process	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	85%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	endomembrane system	GO:0012505	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKI3

Fln msg: your sequence is longer than subject: 872 - 477

Fln protein: MAGRLGGALLLYPTVSTINNISCKNLNPCFASQAFTLSPSAFSLNFHMFSIVRNAKFTLRHFNPSSRKNNSVVLGTRNHSSRSFRSERGRDDEPIPAWRRTPKTTTFNAKSTNRPESKSLVEEELDMDNLFGKRGASMSGRSNPGRNDYNDGSSRNYRGNDVSARGRQGGKGSFNGVSPRGRRGGNSSFNGVSARGRRGGGVLSDRRGSNPSGRQALESSDDEDEDESEDVWENETSSSPRRYHKTNDFDKINSNRRQTQSKRPAEEELDMDNWFDKRGISMSGRPKRGRNNDNDGLSRTSRGNGVSARGGRGSGVSARGSKSSGRQVLKISDDEDEDESEDEDKDDEFDAVTDVTSSSEDDDEFDSAKPVGHKQPMLSAVQKADPKTSSVKVTGDANYLSQSRFDQHNISPLTLKATNAVGYERMTIVQEATLPSILKGKDVLAKAKTGTGKTVAFLLPAIEVIVKSPPVLRDEKSPPILVLVICPTRELASQAAAEANVLLKFHANIGVQVVTGGTNLPKEQKRLQTNPCQILVATPGRLRDHIENTPGFSRRLLGVKVLVLDEADHLLDMGFRKDLDKIIAAVPKERQTLLFSATVPEEVHKVSQIALKRDHEFINTVEEGSEETHSKVCQSSIIASHERHFNIVYAVLKGHISQDPDYKVLIFCTTARVTRLVAELLAELKFNVREIHSRKSQGYRTRISNEFRISKGLILVTSDVSARGVDYPDVTLVVQMGIPSDRQQYIHRLGRTGRKGKEGQGILLLAPWEEYFLNSVKDLPITKDPVPLLDSETNLKVQRALSHIDLNDKESAYQAWLGYYNSVKQIGRDKSRLVELANEFSRSMGLDKPPAIATSTLSKMGLKNVPGIRTK*

Protein Length: 873

Fln nts: ATGGGACGAAGGAAAATATCTTCGAACTCTTCCTCCGCCTCAACCAAAACCCTACATGTCCCGACGAAGGAAAATATCTTCGAATTCTTCCTCCCCCTCAAGTCTCCACGTTGTCCGCAGATCGACAGCTTGGGGAAGCCCTGCACTGTTGGGTTGGAGAGTGAGTTTGAAGTTAGCTACTAATCCACA_-_ATGGCGGGACGTCTTGGAGGAGCGCTTTTGCTATACCCTACAGTTTCAACCATCAACAACATTTCGTGTAAAAATCTCAATCCTTGCTTTGCCTCTCAAGCATTCACGCTTTCTCCGAGTGCTTTTTCTTTAAATTTCCATATGTTTAGTATTGTAAGGAACGCCAAATTTACCCTGAGGCATTTCAATCCAAGTTCCAGAAAGAATAATTCAGTTGTTTTGGGTACCAGAAATCACTCAAGCCGCTCGTTTCGTTCTGAACGGGGTCGGGACGACGAACCTATCCCAGCTTGGCGAAGAACCCCTAAAACAACGACTTTTAACGCAAAAAGTACAAATAGACCAGAATCCAAAAGTCTGGTTGAAGAGGAACTGGATATGGATAACTTGTTTGGAAAACGGGGTGCATCTATGTCTGGTCGGTCGAATCCTGGTAGAAATGATTATAATGATGGATCGTCGAGGAATTATAGAGGCAATGATGTCTCTGCAAGGGGCAGACAAGGAGGGAAAGGCTCTTTTAATGGGGTCTCTCCAAGGGGCAGGCGAGGAGGGAATAGCTCGTTTAATGGGGTCTCTGCAAGGGGCAGACGAGGTGGGGGTGTCTTGTCGGACAGAAGGGGCTCTAATCCATCTGGTAGGCAAGCACTGGAAAGTAGTGATGACGAGGATGAAGATGAATCTGAAGATGTCTGGGAGAACGAAACTTCTTCGTCTCCTCGAAGATACCACAAAACAAATGATTTTGACAAAATAAATAGTAATAGAAGGCAGACCCAATCCAAACGTCCGGCTGAAGAGGAACTGGATATGGATAACTGGTTTGATAAGCGGGGTATATCTATGTCTGGTCGGCCGAAGCGCGGCAGAAATAATGATAATGATGGATTATCAAGGACTTCTAGAGGTAATGGGGTCTCTGCAAGAGGCGGACGAGGTAGTGGGGTCTCTGCAAGAGGCTCTAAATCCTCTGGTAGGCAAGTACTGAAGATCAGTGATGACGAAGACGAAGACGAGTCTGAAGATGAAGATAAAGATGATGAATTTGATGCTGTTACGGATGTTACATCGAGTAGCGAAGATGATGATGAATTTGATTCAGCGAAGCCTGTGGGGCACAAGCAGCCAATGTTGAGTGCTGTTCAAAAAGCGGATCCAAAGACAAGCAGTGTGAAGGTTACTGGGGATGCTAATTATTTGAGCCAGTCAAGATTTGACCAGCACAATATCTCACCATTGACACTCAAGGCAACCAATGCAGTGGGGTATGAGCGCATGACCATTGTGCAAGAAGCAACTCTTCCATCTATTCTCAAAGGCAAGGATGTGTTGGCCAAGGCTAAAACTGGCACCGGCAAGACAGTAGCATTTCTGCTTCCTGCTATTGAGGTGATAGTGAAGTCACCACCGGTCCTCCGAGATGAGAAAAGTCCGCCTATTCTTGTTCTTGTCATTTGTCCCACTCGGGAACTTGCAAGTCAAGCTGCTGCCGAGGCCAATGTTTTGTTGAAATTCCATGCAAATATTGGTGTACAAGTAGTTACTGGGGGCACTAACTTACCAAAAGAACAGAAACGACTACAAACAAATCCTTGCCAGATATTAGTGGCCACTCCTGGAAGGCTTCGGGACCATATTGAGAATACCCCTGGTTTCTCAAGGCGTTTGTTGGGTGTGAAAGTGCTTGTACTTGATGAAGCTGACCATTTGCTAGATATGGGGTTCCGTAAGGATCTTGATAAGATAATTGCTGCTGTGCCTAAAGAGAGGCAGACACTCCTATTTTCAGCTACAGTTCCAGAAGAGGTTCACAAAGTATCCCAGATTGCTTTAAAACGGGATCATGAGTTTATTAATACAGTTGAAGAGGGCAGTGAGGAAACACACTCAAAGGTTTGTCAGTCATCAATTATTGCTTCACATGAGAGGCATTTCAACATTGTTTATGCTGTTCTGAAAGGGCACATCTCACAGGATCCTGACTACAAGGTCCTTATTTTTTGTACAACTGCAAGGGTTACTAGACTTGTGGCTGAACTTCTGGCGGAGTTGAAATTTAATGTCCGTGAGATTCACTCAAGAAAGTCTCAGGGTTATCGGACACGTATCTCTAATGAGTTTAGGATTTCAAAAGGTCTTATACTTGTTACTTCAGATGTCTCAGCTCGTGGAGTTGATTATCCTGATGTCACTCTTGTTGTTCAGATGGGAATACCTTCTGACCGACAACAGTACATACACCGACTTGGCAGAACTGGACGCAAGGGTAAGGAGGGACAGGGTATTTTGTTACTTGCGCCGTGGGAGGAGTACTTCTTAAATAGTGTGAAAGATTTACCCATCACAAAGGATCCAGTACCTCTTCTAGATTCAGAAACGAATTTGAAGGTGCAGCGAGCACTATCCCATATTGACTTGAACGATAAAGAATCTGCATATCAAGCATGGCTTGGATATTACAATTCTGTGAAACAGATTGGACGAGATAAGAGTAGGCTTGTTGAACTTGCAAATGAATTTAGTCGTTCTATGGGATTGGACAAACCACCAGCAATTGCAACATCAACCCTGTCCAAAATGGGCCTGAAGAATGTTCCAGGAATACGGACAAAATAG___TGGGCAAGTTTGGATGGTGCATTATTCTGCTACAGTCATGATAATGGCCTTCTGAGAGCAGTCTGCTTTACACCGATCATTGGGCATGGAATCTAGCCATGGAATTTCCCTCACTCTACCAAGTCAGCTTGTCTCAGTGCTAAGCTATCACAAGTGTCCCTCGGATTTCATTTGCACTTATTATATGGGGCAAGATGCGGAAGTGTGTACATTCATAGAGGCTTTTGTAATGTGTCAATGTTCCCATAGAGAAGCGGGGATTGTTTGAATCAATCCTTACTATTTCAAGAATGTAATGTTTGGAGAAATACGATGCAGTCAAACCAGACCTTTGCAATTTTGGTGTTCCAAAACTATAATTTGAATTTTGAAGCTCCAATTCCAGTGCAGAACCTTTGGGCTGTTGCACATTAGTATTCTTTAATAGGACCTTGTTTAGTGGACTTGAACATTGTCAGTCAGGTAATCTATTTTGTTTTACTATCTGTAGTTATTATTATTGTCCAATTCAAATTGCTCTGTATTTCCACGTCTTCAATATTTCTTGTGAGTGGTTAAGAGTTTCTTGTGAGTTGTTATGAGTTTCTGATTGCTTTTCTTCACGAAGCTCCTTTTGTGGCAGT

Fln Alignment:

Contig1300___KADPKTSSVKVTGDANYLSQSRFDQHNISPLTLKATNAVGYERMTIVQEATLPSILKGKDVLAKAKTGTGKTVAFLLPAIEVIVKSPPVLRDEKSPPILVLVICPTRELASQAAAEANVLLKFHANIGVQVVTGGTNLPKEQKRLQTNPCQILVATPGRLRDHIENTPGFSRRLLGVKVLVLDEADHLLDMGFRKDLDKIIAAVPKERQTLLFSATVPEEVHKVSQIALKRDHEFINTVEEGSEETHSKVCQSSIIASHERHFNIVYAVL-KGHISQDPDYKVLIFCTTARVTRLVAELLAELKFNVREIHSRKSQGYRTRISNEFRISKGLILVTSDVSARGVDYPDVTLVVQMGIPSDRQQYIHRLGRTGRKGKEGQGILLLAPWEEYFLNSVK
B8LKI3______________KIPPPDSRYK-TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI--------DPKKNSIQVLLLVPTRELALQTSQVCKELAK-HLKIQIMVTTGGTSLKDDIMRLY-QPVHILVATPGRVLDL---TKKGVCNLKDCAMLVMDEADKLLSPEFQPLVEQLIGFLPENRQILLYSATFPVTVKSFKDKYLRKPY-VINLMDE---LTLKGITQFYAFVEERQKVHCLNTLFSKLQINQS-----IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIE

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
1164	85	14			0.993533
1235			88	11	0.923564
1236			11	88	0.923564
1239		22		77	0.999999
1240		88	11		0.923564
1242		11	88		0.923564
1245			11	88	0.923564
1248	11			88	0.923564
1251		11	88		0.923564
1255		10		90	0.90298
1273		88		11	0.923564
1306	10	90			0.90298
1307	88	11			0.923564
1367	87			12	0.992554
1370	87		12		0.992554
1373		87	12		0.992554
1374		12		87	0.992554
1377	12			87	0.992554
1379	87		12		0.992554
1381	12	75			0.975346
1383	25	75			1.0
1384		12	75	12	0.975346
1385			12	87	0.992554
1386	14			85	0.993533
1387		14		85	0.993533
1388			14	85	0.993533
1457		16		83	0.994512
1458		16		83	0.994512
1459		16		83	0.994512
1461			83	16	0.994512
1541	12			87	0.992554
3137	66		33		0.997452
3179	33			66	0.997452
3182	83		16		0.994512
3194		16		83	0.994512
3239	14		85		0.993533
3240		85		14	0.993533
3241			14	85	0.993533
3242	85			14	0.993533
3246		14		85	0.993533
3250	85			14	0.993533
3399	25			25	0.995533
3402			33	66	0.997452
3404			33	66	0.997452
3405	33			66	0.997452
3407	33	66			0.997452
3408			33	66	0.997452
3409		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain