SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1274

Length: 1938 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1274

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	4.0e-34	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	f-box and wd40 domain	-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	76%
Blast2go	guard cell differentiation	GO:0010052	Biological Process	76%
Blast2go	guard mother cell cytokinesis	GO:0010235	Biological Process	76%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	76%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	76%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	DENN	IPR001194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	dDENN	IPR005112	-	-
Sma3	uDENN	IPR005113	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 531 - 314

Fln protein: MEKASDKLANYATLVTEQLVIIVSHLAGLGIPDEEAWFIVESIAQKNNLGYKQLIKLRGLLCYLQQVRQDYYGILQGRIQSLSSSVHNLPTQQPHDAADETQQPAEASGLGRSWVQSMFSRDPATRRPPAARVQRGASDSGVLVANENIQNAVPPRKVEIPPIGPKRGYSGVRILRGHKGSITALHAVTRREVYDLTSDQEDAGYFISGSADCTVKLWDPSHRGSELKATLIGHTRAIRAISSDKSRVVSGSDDQCVFVWDKQTSGVLEELKGHDAQVSCVKMLSGERVLTASHDGSVKMWDVRTDTCVATVGRASSAILCMEYDDNTGILAAGGRDAVGNIWDIRAGRQMQKLVGHTKWIRTLRMVGDTIITGSDDWTARVWSVSDGHCDAVLACHAGPITSVEYCASDNGIITGSEDGMVRLWNIGDGSLQCVKNVSIHSSAILSIKTADQWLAIGAADNSMSLFHRHEQRQGVLAGTGDRMAGWQLYRTPQRSAAVVRCVASDIDRGRICSGGRNGILRLWEPMVQT*

Protein Length: 532

Fln nts: AAGGATATTTTGAGAGCATC_-_ATGGAGAAAGCCTCAGACAAGTTGGCCAACTATGCTACATTAGTCACTGAACAACTTGTTATAATTGTGTCTCATCTGGCTGGTTTAGGAATACCTGATGAAGAGGCCTGGTTCATAGTGGAATCAATTGCACAAAAGAACAATCTTGGATACAAGCAACTTATTAAGCTGAGGGGCTTATTGTGTTATTTGCAACAAGTGCGACAAGACTATTATGGTATCCTACAAGGACGGATACAATCATTGTCATCCTCTGTGCACAACCTACCCACTCAGCAACCACATGATGCCGCAGATGAAACTCAACAGCCAGCTGAAGCATCTGGTCTAGGACGGAGTTGGGTACAAAGCATGTTCAGTCGAGATCCAGCTACCCGTAGACCGCCTGCTGCTCGTGTGCAAAGAGGAGCATCTGACAGTGGTGTTCTAGTTGCCAATGAGAACATTCAGAATGCTGTACCACCACGGAAAGTAGAGATACCCCCCATTGGGCCAAAAAGGGGCTATTCAGGTGTGCGTATACTTAGGGGTCATAAGGGTTCTATTACTGCTCTCCATGCAGTGACAAGGCGTGAAGTATATGATCTCACAAGTGATCAAGAGGATGCTGGATATTTCATTAGTGGGAGTGCTGATTGCACAGTCAAATTATGGGATCCAAGCCATCGTGGATCAGAACTTAAAGCAACCTTAATAGGGCATACCAGGGCAATTCGCGCCATTAGCTCTGACAAAAGTCGAGTTGTCTCTGGCTCTGATGATCAGTGTGTGTTTGTTTGGGATAAACAAACTTCTGGAGTTTTGGAAGAACTCAAGGGACATGACGCTCAGGTCAGCTGTGTAAAAATGCTTTCAGGAGAGCGTGTGCTTACTGCTTCTCATGATGGAAGTGTTAAGATGTGGGATGTTAGAACTGATACTTGTGTAGCAACAGTTGGCCGTGCTTCAAGTGCAATTCTATGTATGGAGTATGATGACAACACTGGAATTTTAGCTGCTGGTGGAAGGGATGCGGTTGGGAATATATGGGACATTCGAGCTGGAAGACAAATGCAGAAGCTTGTAGGGCACACAAAATGGATCCGAACCTTGAGAATGGTTGGAGACACGATTATCACTGGGAGCGATGATTGGACTGCTAGAGTATGGTCTGTATCTGATGGACATTGTGATGCTGTGCTTGCATGCCATGCTGGCCCAATAACTAGTGTTGAATACTGTGCATCTGACAATGGAATAATCACAGGTTCCGAAGATGGTATGGTGCGTTTATGGAACATTGGAGATGGATCATTGCAATGTGTGAAAAATGTCAGCATACATTCATCGGCTATACTGTCAATCAAGACTGCAGATCAGTGGTTAGCTATTGGTGCTGCAGATAATTCTATGTCTCTCTTCCATCGACATGAACAGAGACAAGGTGTTCTTGCTGGTACAGGTGATAGGATGGCTGGCTGGCAATTGTATCGAACTCCACAACGCAGTGCTGCTGTGGTCCGATGTGTAGCTTCTGATATTGACAGGGGCAGAATCTGCAGCGGTGGTCGCAATGGAATTCTTCGGCTTTGGGAACCAATGGTGCAAACATGACAGTTGTACCATAAACTCATTTGCAATATTAGTCTGCAAACAAGCAAGAAAACACCATTCTATTTCTTGTGAGGTATAAGGGACATATTTTGGCATGCATGAAGAGACCATCATGACATGTATGATTATTGTATTGTATGAAGTGAAAAGGCATAGCTTATTGAGTTTGCATTTGCAATTTTGAAATGTAGCTGTATAATATATAACCAAAATGATATGATTCTAAATTTTAGCATATTTTGGATGAACTTAAGCAGCTGCATGCTTATTTTTGTATGGAAGTTTGCTTCTTGTAGATTTATGTTCATTACACTTTCATAGCTAC

Fln Alignment:

Contig1274___NAVPPRKVEIPPIGPKRGYSGVRILRGHK--GSITALHAVTRREVYDLTSDQE---------------DAGYFISGSADCTVKLWDPSHRGSELKATLIGHTRAIRAISSD--KSRVVSGSDDQCVFVWDKQTSGVLEELKGHDAQVSCVKM-LSGERVLTASHDGSVKMWDVRTDTCVAT-VGRASSAILCMEYDDNTGILAAGGRDAVGNIWDIRAGRQMQKLVGHTKWIRTLRMV-----GDTIITGSDDWTARVWSVSDGHCDAVLACHAGPITSVEYCASDNGIITGS--EDGMVRLW
A9NPC1______________NSFKPYKLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDV-HTGDCIK-TLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1414	80	20		0.995493
1415		20	80	0.995493
1782		66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain