SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1234

Length: 1968 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1234
CGTCGTGACCTTGGCTGTCACTCAGTTGTTGGTCTCCTTTGTGTGGGAATCAAAGAGAGTGCATTGGTGCAATCCCTTGTCACATTTGCAAATGTATGTGTCATGTTGTTCGTCATTATAGCTGGAAGTGTTATTGGTTTTCGGACTGGTTGGGCTGGATATGAGCTGTCCAATGGGTATTTCCCATATGGAATCAATGGGATGCTTGGTGGTGCTGCAACAGTTTTCTTTGCATACATTGGATTTGATACAGTTGCGAGTACTGCTGAAGAGGTCAAAAATCCACAGCGTGATTTGCCTCTAGGCATTGGCCTTTCTCTTTTCATATGTAGTGGACTATACATGTTGGTGTCTGCTGTTATTGTGGGCATTGTACCATACTATTCAATGGACCCAGACACCCCAATTTCATCTGCTTTTGCAGACCATGGTATGCATTGGGCCATGTATATTGTCACAGCTGGCGCAGTGGCTGCCCTTTCATCTACACTGATGGGCTCACTTCTCCCTCAGCCTAGAATCTTGATGGCAATGGCTAGAGATGGATTGCTGCCCTCATTTTTCTCCAAACTCAATGAAAAAACTTCAGTTCCAGTTAATAGCACATTAGTGTCTGGATTTGTTGCTGCCCTTTTGGCATTTTTTATGGATGTTTCTCAACTAGCAGGCATGGTTAGTGTTGGTACACTTCTTGCATTTACAATTGTGGCCATCTCTATTCTTATACTGAGATATGTGCCACCAGATGATGTGCCTGTGTCACCTTCACTTCAGGAATCAGCAGAATTTGAGCCCTTACCACTGAGTTCTCAAGCAAGTAACAGTGAAGCCCCTCAACATTATCCTAGTTGCATGGATCAAACAATCCGAGACCTAAGTAAGGTTGAGAATATTGCAACACATAAGAATGAACCGATATCTCAAGAACTTCAAAATTCTGAAGAGGTTGAGAATCTTTTAGAATATGCTAAAAGAGTTGATGCTGACCTTGAAGATCCTCTAATTTTCAAAGAAAATGATGGTGCAGGGAAATTAAGCAACCAAAAGAGACGAAGGGCTGCAGGTCTTAGCATTTCTGCTGTATGTGCTGGAGTTTTACTAGTAACGCTTGCAGCATCTATTGAATTGCTCCCCAGCTGGTTGCGATGGTGTGTGGGAGCAATTGGCGTCGTGACCTCAGTTTTTATTTGGTTTAACTGTGCTGTCACTAATTGAACAAGATGAAGGACGCCACAGCTTTGGGCATAGTGGAGGATTCATTTGTCCATTTGTACCAGTACTCCCTGCAGCATGTATTCTAATAAATGTCTATTTGGTGATCAATCTAGGGACAAGTACATGGATCCGAGTTTCCATCTGGCTTCTATTTGGAGTGGTGATCTATTTGTTTTATGGAATGAAGCACAGTTTGTTATCAGAAGCAATCTACGTTCCAAACTTGCAAGCAGATGATACTGTCCAATTGCCATCCTCAGTAATTGTCTAAAGTTTAAGATCTATCTGTATAGCTTCTTCCATATGTCTTGCTTTGTACATGCAGATCCAGGGCCAATGTATGCCCTTATTATTTGTGAGTTTGGCTTTCCAGCCTTGGTCACCCATTCTACATTCAATTTAGAGGAGCTCCTTGCCAGTGTAATATTAATTTATTAAATCAATCCAAGAGTAGGTATTGATCATATTTTAATTCAGACAGATTCACAACATTGAATCTCTATTTGTTTGTCAAACTTCTGTACAAAATGTTCAACATAAATGATGTTCTCCCCCATTGTTTAAATCCCCTTTGAGCATTCAATTCATTGTTGGCTTTTAAAAGAGCACAAACACTTATTCATGATAAACACGGTGAAGTGGGGAAAATATACGATATTATTTTAGTGTTGCAGCAAAAGTAAACACAAGGCTAGCCTGAGATGGGCTGCCAAATCTCTCTCAATGACATCATCTCTCGCATACAAAGAACTT

Ace file of the UniGene sp_v2.0_unigene1234

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cationic amino acid transporter n=1 Tax=Populus trichocarpa RepID=B9IPU4_POPTR	-	-	59%
FL-Next	tr=Cationic amino acid transporter; subsp. trichocarpa).	-	-	61%
Blast2go	cationic amino acid transporter	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	70%
Blast2go	amino acid transport	GO:0006865	Biological Process	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9IPU4

Fln msg: Separated hits, possible frame ERROR between 1167 and 1184, your sequence is shorter than subject: 496 - 641

Fln protein: RRDLGCHSVVGLLCVGIKESALVQSLVTFANVCVMLFVIIAGSVIGFRTGWAGYELSNGYFPYGINGMLGGAATVFFAYIGFDTVASTAEEVKNPQRDLPLGIGLSLFICSGLYMLVSAVIVGIVPYYSMDPDTPISSAFADHGMHWAMYIVTAGAVAALSSTLMGSLLPQPRILMAMARDGLLPSFFSKLNEKTSVPVNSTLVSGFVAALLAFFMDVSQLAGMVSVGTLLAFTIVAISILILRYVPPDDVPVSPSLQESAEFEPLPLSSQASNSEAPQHYPSCMDQTIRDLSKVENIATHKNEPISQELQNSEEVENLLEYAKRVDADLEDPLIFKENDGAGKLSNQKRRRAAGLSISAVCAGVLLVTLAASIELLPSWLRWCVGAIxxxxxxxLFGLTVLSLIEQDEGRHSFGHSGGFICPFVPVLPAACILINVYLVINLGTSTWIRVSIWLLFGVVIYLFYGMKHSLLSEAIYVPNLQADDTVQLPSSVIV*

Protein Length: 497

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTTGGTCTCCTTTGTGTGGGAATCAAAGAGAGTGCATTGGTGCAATCCCTTGTCACATTTGCAAATGTATGTGTCATGTTGTTCGTCATTATAGCTGGAAGTGTTATTGGTTTTCGGACTGGTTGGGCTGGATATGAGCTGTCCAATGGGTATTTCCCATATGGAATCAATGGGATGCTTGGTGGTGCTGCAACAGTTTTCTTTGCATACATTGGATTTGATACAGTTGCGAGTACTGCTGAAGAGGTCAAAAATCCACAGCGTGATTTGCCTCTAGGCATTGGCCTTTCTCTTTTCATATGTAGTGGACTATACATGTTGGTGTCTGCTGTTATTGTGGGCATTGTACCATACTATTCAATGGACCCAGACACCCCAATTTCATCTGCTTTTGCAGACCATGGTATGCATTGGGCCATGTATATTGTCACAGCTGGCGCAGTGGCTGCCCTTTCATCTACACTGATGGGCTCACTTCTCCCTCAGCCTAGAATCTTGATGGCAATGGCTAGAGATGGATTGCTGCCCTCATTTTTCTCCAAACTCAATGAAAAAACTTCAGTTCCAGTTAATAGCACATTAGTGTCTGGATTTGTTGCTGCCCTTTTGGCATTTTTTATGGATGTTTCTCAACTAGCAGGCATGGTTAGTGTTGGTACACTTCTTGCATTTACAATTGTGGCCATCTCTATTCTTATACTGAGATATGTGCCACCAGATGATGTGCCTGTGTCACCTTCACTTCAGGAATCAGCAGAATTTGAGCCCTTACCACTGAGTTCTCAAGCAAGTAACAGTGAAGCCCCTCAACATTATCCTAGTTGCATGGATCAAACAATCCGAGACCTAAGTAAGGTTGAGAATATTGCAACACATAAGAATGAACCGATATCTCAAGAACTTCAAAATTCTGAAGAGGTTGAGAATCTTTTAGAATATGCTAAAAGAGTTGATGCTGACCTTGAAGATCCTCTAATTTTCAAAGAAAATGATGGTGCAGGGAAATTAAGCAACCAAAAGAGACGAAGGGCTGCAGGTCTTAGCATTTCTGCTGTATGTGCTGGAGTTTTACTAGTAACGCTTGCAGCATCTATTGAATTGCTCCCCAGCTGGTTGCGATGGTGTGTGGGAGCAATTGGxxxxxxxxxxxxxxxxxxTTTATTTGGTTTAACTGTGCTGTCACTAATTGAACAAGATGAAGGACGCCACAGCTTTGGGCATAGTGGAGGATTCATTTGTCCATTTGTACCAGTACTCCCTGCAGCATGTATTCTAATAAATGTCTATTTGGTGATCAATCTAGGGACAAGTACATGGATCCGAGTTTCCATCTGGCTTCTATTTGGAGTGGTGATCTATTTGTTTTATGGAATGAAGCACAGTTTGTTATCAGAAGCAATCTACGTTCCAAACTTGCAAGCAGATGATACTGTCCAATTGCCATCCTCAGTAATTGTCTAAAGTTTAAGATCTATCTGTATAGCTTCTTCCATATGTCTTGCTTTGTACATGCAGATCCAGGGCCAATGTATGCCCTTATTATTTGTGAGTTTGGCTTTCCAGCCTTGGTCACCCATTCTACATTCAATTTAGAGGAGCTCCTTGCCAGTGTAATATTAATTTATTAAATCAATCCAAGAGTAGGTATTGATCATATTTTAATTCAGACAGATTCACAACATTGAATCTCTATTTGTTTGTCAAACTTCTGTACAAAATGTTCAACATAAATGATGTTCTCCCCCATTGTTTAAATCCCCTTTGAGCATTCAATTCATTGTTGGCTTTTAAAAGAGCACAAACACTTATTCATGATAAACACGGTGAAGTGGGGAAAATATACGATATTATTTTAGTGTTGCAGCAAAAGTAAACACAAGGCTAGCCTGAGATGGGCTGCCAAATCTCTCTCAATGACATCATCTCTCGCATACAAAGAACTT

Fln Alignment:

Contig1234___VVGLLCVGIKESALVQSLVTFANVCVMLFVIIAGSVIGFRTGWAGYELSNGYFPYGINGMLGGAATVFFAYIGFDTVASTAEEVKNPQRDLPLGIGLSLFICSGLYMLVSAVIVGIVPYYSMDPDTPISSAFADHGMHWAMYIVTAGAVAALSSTLMGSLLPQPRILMAMARDGLLPSFFSKLNEKTSVPVNSTLVSGFVAALLAFFMDVSQLAGMVSVGTLLAFTIVAISILILRYXXXXXXXXXXXLQESAEFEPLPLSSQ-ASNSEAPQHYPSCMDQTIRDLSKVENIATHKNEPISQELQNSEEVENLLEYAKRVDADLEDPLIFKENDGAGKLSNQ-KRRRAAGLSISAVCAGVLLVTLAASIELLPSWLRWCVGAIGxxxxxxLFGLTVLSLIEQDEGRHSFGHSGGFICPFVPVLPAACILINVYLVINLGTSTWIRVSIWLLFGVVIYLFYGMKHSLLSEAIYVPNLQADD
B9IPU4______________VTGLLCVGIKESTLAQAIVTSINVCAMLFIIIAGTYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPLGIGLSLSICCSLYMLVSVVIVGLVPYYAMDPDTPISSAFSVHGMQWAAYLITAGAVMALCSTLMGSMLPQPRILMAMARDGLLPSFFSDVNRSTQVPVKSTLVTGFGAAVLSFFMDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPFPSSLQETIDSVSLRYSSQDVYEEKAAIHAGTSKDSKLPLLGKAKTI--------------------------------EYPLLVKQEAQSNFVLNEGKRREIAGWTIAATCIGAVLLTYAASDLSLPSPLRFTTCGVGxxxxxxLSGLIVLTCIEQDDARHSFGHSGGFICPFVPLLPIVCILVNIYLLINLGAATWTRVSVWLIVGVLVYVFYGRKHSSLRDAVYVPATHADE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
325	88		11		0.923564
327	88	11			0.923564
330	11			88	0.923564
331	88	11			0.923564
332		11	88		0.923564
334			88	11	0.923564
336	88		11		0.923564
339	88		11		0.923564
344		11		88	0.923564
347		11		88	0.923564
348	11		88		0.923564
750		12		87	0.992554
751	12		87		0.992554
753			87	12	0.992554
787	14			85	0.993533
802		83		16	0.994512
824		33	66		0.997452
826			66	33	0.997452
1081	25			75	0.996473
1082			75	25	0.996473
1174	75	25			0.996473
1175	75		25		0.996473
1308	84	15			0.999986
1310	84	15			0.999986
1889	25			75	0.996473
1890		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain