SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1228

Length: 1194 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1228

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative methyltransferase family protein n=3 Tax=Arabidopsis RepID=F4IVK3_ARATH	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	methyltransferase family protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	77%
Blast2go	Tetracycline biosynthesis	00253	77%
Blast2go	Histidine metabolism	00340	77%
Blast2go	Tyrosine metabolism	00350	77%
Blast2go	Phenylalanine metabolism	00360	77%
Blast2go	Tryptophan metabolism	00380	77%
Blast2go	Benzoxazinoid biosynthesis	00402	77%
Blast2go	Selenocompound metabolism	00450	77%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	77%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	77%
Blast2go	Methane metabolism	00680	77%
Blast2go	Porphyrin and chlorophyll metabolism	00860	77%
Blast2go	Carotenoid biosynthesis	00906	77%
Blast2go	Phenylpropanoid biosynthesis	00940	77%
Blast2go	Flavonoid biosynthesis	00941	77%
Blast2go	Anthocyanin biosynthesis	00942	77%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	77%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	77%
Blast2go	Insect hormone biosynthesis	00981	77%
Blast2go	Biosynthesis of type II polyketide products	01057	77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	methylation	GO:0032259	Biological Process	0.0	77%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A822

Fln msg: Overlapping hits, possible frame ERROR between 764 and 760,

Fln protein: MEVQTTHIHNEEEEEEVYLDASFFVNDRYEMQTFTYGSHVLRLLCLQSASTDYDLTGQLVWPGAELLNHHLARCSDFLTGCSIIELGSGVGVTGLLCSRFCRQIVLTDHNEIVLKVLKQNIDLQLSSGIASCAEITSDKLEWGNHDQLSQILKQFPEGFDLTMGADICFQQCSIPLLFETVEQLLRFGDKSGKFILAYVSRAKSIDAMVANEAxxxHGLQMQEKAGSRTMVAGGSCEGMIFEFILN*

Protein Length: 248

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTATCTCGGCGTTGGACACAGAAAAGGTAAATCAACGTCAAAGCATATGTTATATAGACTGGTGTTGTTACAATCGTTCCTACCCTTTGGAAAAC_-_ATGGAAGTTCAAACAACACATATTCACAACGAGGAGGAGGAAGAGGAGGTATATTTGGACGCGTCTTTCTTTGTCAATGACAGGTATGAGATGCAAACTTTTACCTACGGTTCTCACGTTCTTCGGCTCCTGTGCCTGCAATCTGCATCCACAGATTATGATCTGACAGGACAGCTAGTGTGGCCAGGAGCAGAGCTGCTGAATCACCATCTTGCACGGTGCTCAGATTTTCTGACTGGTTGTTCCATCATTGAATTGGGTTCTGGGGTTGGAGTTACAGGATTACTTTGTAGCAGGTTCTGTCGCCAAATTGTGCTGACTGACCACAATGAAATTGTTCTCAAGGTGTTGAAGCAAAATATAGACCTACAGCTAAGTTCAGGAATAGCAAGTTGTGCAGAGATAACATCAGATAAGCTTGAATGGGGAAATCATGATCAACTTTCTCAGATTCTGAAGCAGTTTCCAGAGGGCTTCGACCTGACCATGGGGGCCGACATTTGCTTTCAACAATGTAGCATTCCCCTGCTTTTTGAGACTGTTGAGCAGCTCTTGAGATTTGGCGATAAAAGTGGCAAATTTATTCTTGCTTATGTCTCTCGGGCTAAGAGCATCGATGCTATGGTTGCAAATGAAGCTxxxxxxxxxCATGGCCTTCAGATGCAAGAAAAAGCAGGGTCTCGGACAATGGTTGCTGGTGGAAGCTGTGAAGGCATGATATTTGAATTTATTCTGAATTAG___AAAAAGAGCTCAATTCACAGATGCTCTGGAAATGGTAGCAATGTTGATTGAACCTAGTTTCTTAAGCTTTACTTCCCATATATTGTAGTACAGGAGTCAGCAAAATAATGTAGTGTGTACTCATGCTTAGCATAGTAGGGAGTGATATTTTGGCAGCATTGATGCTATGGTTGCAAATGAAGCCAAGAAGCATTTGCGGGGCCTCACACAATAATTGCTAGTGGACGCTATGGGCTGCGTTTTGCGGACTCGATAGTACGTCAACGGAATTGGCTGTGATTCAGAGCATCTTCAATCTGCGTGATAATGACCAAAGCGCCATAGTTAGTGAAATGC

Fln Alignment:

Contig1228___MEVQTTHIHNXXXXXXVYLDASFFVNDRYEMQTFTYGSHVLRLLCLQSASTDYDLTGQLVWPGAELLNHHLARCSDFLTGCSIIELGSGVGVTGLLCSRFCRQIVLTDHNEIVLKVLKQNIDLQLSSGIASCAEITSDKLEWGNHDQLSQILKQFPEGFDLTMGADICFQQCSIPLLFETVEQLLRFGDKSGKFILAYVSRAKSIDAMVANEAxxHGLQMQEKAGSRTMVAGGSCEGMIFEFILN
D5A822______________MEIQTKNLPNEQEEEEVYFGESFFVNDSYEMRTFTYGSHVLRLQCLQSASTDYDLTGQLVWPGAELLNHHISQCSDFLTGCSIIELGSGVGVTGLLCSRFCRQLVLTDHNEIVLKVLKQNIDLQLSSGISTCAEITSEKLEWGNHDQLSEILKRFPEGFDLIIGADICFQQCSIPLLFETVEQLLRFGDKSGKFILAYVSRAKSIDAMVANEAxxHGLQMHEVAGSRTLVAGGSCEGVIFEFILN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
925	50		50		1.0
1053		75		25	0.996473
1087	33		66		0.997452
1091	33	66			0.997452
1092		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain