SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1226

Length: 2069 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1226
CGGGCCGATACAATAATGTTGTATGAAGCTTATCATGTGATATGAGAGGTATAAACGAGTCCAAAAGTCCCTAGTGCTCTATCTCGGGACCTCATTCGCGATATCCACCCGGTGTCTAGCATCATCAGGTCTATAAAGCGCCACGCTGCAACAATTTTAATGCCAAGATGTGATGGAACAGTGTTTCATGCTCATCTGAATTTAAGATATAGCAAATTTTCTGCTGACAACCAACACATTGGCGCTCCCCTGATTCGATCTCCATTTGTGTCATCAAACCAAAAATTTGGTACGATTTGGAAGGTTCGCATGGCTGCCCAATCAGGTGTCGACGTAAAGCACGAGGAACCCGCCATTAAACCAGGAAGCACTGGGAAAGCTGTGGTTGTTGGAGCTGGGCCAGCAGGTTGTGTAATGTCACTTTATCTACTTCGTAGAGGATTTCACGTTCATGTTTTTGAACGGCGATCCATGATGGATGAATCCAAGCTTAAAGGTGATCCGCGTTCTTATCCGATTTTGATGACAAAAAGAGGCATTAAGGCTATTGAAGCTGCTGGCTTGGAGCTGCCATCTTCTCTTATGAAACGGCAAGTTGGAAACTGTACACATCTACCTAATGGGAAAAAGATGAAAGTGGATTACTACAGTGGACCTGGCATACAAAGCTCTATTGCAAGCCGAAATGGATTAGTGGCCTTTTTGCAGCAAAGTCTTCTTGAAAGGGATTCTGAAAATCTCTCTCTTTATTTTGGGTGGGAGATTTCTACAATTGAGGATACAAAAAGCACAGCCAAATTTTGCCGCAATCAAAAGTACACCAACGAGGTGGAAAATAATGTGGATGGAAAGATCAAGCTGGATGAAGTTGAAGTTGAATTTGATCTTTTAATTGGAGCTGATGGTGTTTCAAGTAAAGTACGATCAGAACTTCTACGACTGGATGGAATCTACAGCTCAACTTGTGACAACCCTAAGAAGTCGCAAATTAAACTAGACTTCATTGAGAATCCACGCATGTATAAGTCATTCTATATCCATCCGTCACTGGCAAAAGAGTCTGCCTTTATTGTTGACCATGATAGGGTACAGTCATGGCGAACTTTAAATATGATGCTCATCAATGTTGCTGATGGAAGCTTTTGGGGTGGTACCCTGAATGAAGAATTAATCAGTTCATCTTCTCCTGAAGATATCAAGAGGATTTTTAGAGACAAGGCTCCAGATGTGCTTGATCTACTTCTACGTGAGAACCCCCTTTTTGCAGAAGAGTTTTGCAGGCAGCCATCAATGAAAGGTGGTGGGGCAGTGACACTCTCCAAATTTCATCACAAAAACATAGTTTTGATTGGGGATGCAGCACATGCCATGTTCCCTACCTATGGTACTGGTTGTAATGTAGCTTTGGAGGATTGCTTCATATTTGACAACATTTTAAGGGAGTTGACACCATCAGATGGAAGCAAATTTCCTTATCATTTAGCAACAGCAGAATTTACAAAGAGGCGAATTGAAGATGCCCATGCCATTGTGGAGATGAATACTAATTTCTTACTTTTTCCGCGTAATTTTTGGGGAATCATTCAGAAAGTTTTTCTGCGTGCACTTCATAAGTGGTTTCCTACAGTATTTAGACCAACTGCACATGATCTCCTGTGGACGGAAACTCCCTTCAGTGAAATCAAAGCTAAGAAGTACAAGGAGGATATCTTCTTTTATAGCATAATCGTAATTTTTTTCTTGATTATTGCGCTGAGTAGTATAATTCTACTCAAGAAATTAATTATGTGATAGGTGCAAAATCTCGTATATTTCTAGGAAACAATAAAACATAAAATCAAACCAGAAAAACCCATAAATTATATCCAACATAAGACCAGAAGTATCGATTTGAAAAGGCTACATGACCTATGTAATATATGAATATTGCCCTTTCACATGTCCAAAGTAATAATGCTATATAGTTTTGTCTATTTAGGTAATTATAATTTTGCGGTGCCCTCTATGTAAGGCAAGATGCATTGCATACTATTAGGATACTTTATCTGAGACACCTACATAGATGACCC

Ace file of the UniGene sp_v2.0_unigene1226 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vioC monooxygenase [Nodularia spumigena CCY9414] gb\|EAW47137.1\| vioC monooxygenase [Nodularia spumigena CCY9414]	-	-	8.0e-27	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	kynurenine 3-monooxygenase	-	-	0.0	48%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	0.0	48%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	0.0	48%

Source	InterPros	Term	Type	e value	Identity
Sma3	FAD dependent oxidoreductase	IPR006076	-	0.0	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL94

Fln msg:

Fln protein: MPRCDGTVFHAHLNLRYSKFSADNQHIGAPLIRSPFVSSNQKFGTIWKVRMAAQSGVDVKHEEPAIKPGSTGKAVVVGAGPAGCVMSLYLLRRGFHVHVFERRSMMDESKLKGDPRSYPILMTKRGIKAIEAAGLELPSSLMKRQVGNCTHLPNGKKMKVDYYSGPGIQSSIASRNGLVAFLQQSLLERDSENLSLYFGWEISTIEDTKSTAKFCRNQKYTNEVENNVDGKIKLDEVEVEFDLLIGADGVSSKVRSELLRLDGIYSSTCDNPKKSQIKLDFIENPRMYKSFYIHPSLAKESAFIVDHDRVQSWRTLNMMLINVADGSFWGGTLNEELISSSSPEDIKRIFRDKAPDVLDLLLRENPLFAEEFCRQPSMKGGGAVTLSKFHHKNIVLIGDAAHAMFPTYGTGCNVALEDCFIFDNILRELTPSDGSKFPYHLATAEFTKRRIEDAHAIVEMNTNFLLFPRNFWGIIQKVFLRALHKWFPTVFRPTAHDLLWTETPFSEIKAKKYKEDIFFYSIIVIFFLIIALSSIILLKKLIM*

Protein Length: 545

Fln nts: CGGGCCGATACAATAATGTTGTATGAAGCTTATCATGTGATATGAGAGGTATAAACGAGTCCAAAAGTCCCTAGTGCTCTATCTCGGGACCTCATTCGCGATATCCACCCGGTGTCTAGCATCATCAGGTCTATAAAGCGCCACGCTGCAACAATTTTA_-_ATGCCAAGATGTGATGGAACAGTGTTTCATGCTCATCTGAATTTAAGATATAGCAAATTTTCTGCTGACAACCAACACATTGGCGCTCCCCTGATTCGATCTCCATTTGTGTCATCAAACCAAAAATTTGGTACGATTTGGAAGGTTCGCATGGCTGCCCAATCAGGTGTCGACGTAAAGCACGAGGAACCCGCCATTAAACCAGGAAGCACTGGGAAAGCTGTGGTTGTTGGAGCTGGGCCAGCAGGTTGTGTAATGTCACTTTATCTACTTCGTAGAGGATTTCACGTTCATGTTTTTGAACGGCGATCCATGATGGATGAATCCAAGCTTAAAGGTGATCCGCGTTCTTATCCGATTTTGATGACAAAAAGAGGCATTAAGGCTATTGAAGCTGCTGGCTTGGAGCTGCCATCTTCTCTTATGAAACGGCAAGTTGGAAACTGTACACATCTACCTAATGGGAAAAAGATGAAAGTGGATTACTACAGTGGACCTGGCATACAAAGCTCTATTGCAAGCCGAAATGGATTAGTGGCCTTTTTGCAGCAAAGTCTTCTTGAAAGGGATTCTGAAAATCTCTCTCTTTATTTTGGGTGGGAGATTTCTACAATTGAGGATACAAAAAGCACAGCCAAATTTTGCCGCAATCAAAAGTACACCAACGAGGTGGAAAATAATGTGGATGGAAAGATCAAGCTGGATGAAGTTGAAGTTGAATTTGATCTTTTAATTGGAGCTGATGGTGTTTCAAGTAAAGTACGATCAGAACTTCTACGACTGGATGGAATCTACAGCTCAACTTGTGACAACCCTAAGAAGTCGCAAATTAAACTAGACTTCATTGAGAATCCACGCATGTATAAGTCATTCTATATCCATCCGTCACTGGCAAAAGAGTCTGCCTTTATTGTTGACCATGATAGGGTACAGTCATGGCGAACTTTAAATATGATGCTCATCAATGTTGCTGATGGAAGCTTTTGGGGTGGTACCCTGAATGAAGAATTAATCAGTTCATCTTCTCCTGAAGATATCAAGAGGATTTTTAGAGACAAGGCTCCAGATGTGCTTGATCTACTTCTACGTGAGAACCCCCTTTTTGCAGAAGAGTTTTGCAGGCAGCCATCAATGAAAGGTGGTGGGGCAGTGACACTCTCCAAATTTCATCACAAAAACATAGTTTTGATTGGGGATGCAGCACATGCCATGTTCCCTACCTATGGTACTGGTTGTAATGTAGCTTTGGAGGATTGCTTCATATTTGACAACATTTTAAGGGAGTTGACACCATCAGATGGAAGCAAATTTCCTTATCATTTAGCAACAGCAGAATTTACAAAGAGGCGAATTGAAGATGCCCATGCCATTGTGGAGATGAATACTAATTTCTTACTTTTTCCGCGTAATTTTTGGGGAATCATTCAGAAAGTTTTTCTGCGTGCACTTCATAAGTGGTTTCCTACAGTATTTAGACCAACTGCACATGATCTCCTGTGGACGGAAACTCCCTTCAGTGAAATCAAAGCTAAGAAGTACAAGGAGGATATCTTCTTTTATAGCATAATCGTAATTTTTTTCTTGATTATTGCGCTGAGTAGTATAATTCTACTCAAGAAATTAATTATGTGA___TAGGTGCAAAATCTCGTATATTTCTAGGAAACAATAAAACATAAAATCAAACCAGAAAAACCCATAAATTATATCCAACATAAGACCAGAAGTATCGATTTGAAAAGGCTACATGACCTATGTAATATATGAATATTGCCCTTTCACATGTCCAAAGTAATAATGCTATATAGTTTTGTCTATTTAGGTAATTATAATTTTGCGGTGCCCTCTATGTAAGGCAAGATGCATTGCATACTATTAGGATACTTTATCTGAGACACCTACATAGATGACCC

Fln Alignment:

Contig1226___GTVFHAHLNLRYSKFS-ADNQHIGAPLIRSPFVSSNQKFGTIWKVRMAAQSGVDVKHEEPAIKPGSTGKXXXXXXXXXGCVMSLYLLRRGFHVHVFERRSMMDESKLKGDPRSYPILMTKRGIKAIEAAGLELPSSLMKRQVGNCTHLPNGKKMKVDYYSGPGIQSSIASRNGLVAFLQQSLLERDSENLSLYFGWEISTIEDTKSTAKFCRNQKYTNEVENNVDGKIKLDEVEVEFDLLIGADGVSSKVRSELLRLDGIYSSTCDNPKKSQIKLDFIENPRMYKSFYIHPSLAKESAFIVDHDRVQSWRTLNMMLINVADGSFWGGTLNEELISSSSPEDIKRIFRDKAPDVLDLLLRENPLFAEEFCRQPSMKGGGAVTLSKFHHKNIVLIGDAAHAMFPTYGTGCNVALEDCFIFDNILRELTPSDGSKFPYHLATAEFTKRRIEDAHAIVEMNTNFLLFPRNFWGIIQKVFLRALHKWFPTVFRPTAHDLLWTETPFSEIKAKKYKED
B8LL94______________GALAHVHLNFRCSHFSPADNQHIGAPLIRPPFLSLNQKFERLRKVRMAAQTGVDVQHEEPASKPGSIGKAVVVGAGPAGCVMALYLLRRGFQVHVFERRSMIDESKLKGDPRSYPILMTKRGIKAIEAAGLELPSSLMKRQVGNCTHLPNGKKMKVDYYSGPGIESSIASRNGLVAFLQQSLLERDPENLTLYFGWEVSTIEDTKSTVKFCHNQKHTSVVENNMDGRNKVDEIEVEFDLLIGADGVSSKVRSELLRLDGIYSSASDNPKKSHITLDFVENPRMYKSFYIRPSLARESTFVVDHDRVQSWRTLNMMLINVADGSFWGGTLNEELISASSPADVKKIFRDKAPDVLDLLLRENPIFAEEFWRQPSMKGGGAVMLSKFHHKNIVLIGDAAHAMFPTYGTGCNVALEDCFIFNNILRELTPSDGSKFPYHIATAEFTKRRIEDAHAIVEMNTNFLLFPRNFWGIIQKVFLRTLHKWFPKVFRPTAHDLLWTETPFSEIKAKKHKED

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
268		10		90	0.90298
304	88	11			0.923564
308			11	88	0.923564
309	88	11			0.923564
311	11			88	0.923564
313		88	11		0.923564
528	84		15		0.999986
529	15			84	0.999986
533			15	84	0.999986
541	76		15	7	0.999983
544			83	16	0.999991
547		16		83	0.999991
549	16		83		0.999991
561	10			90	0.90298
563	10		90		0.90298
564		90		10	0.90298
565		90		10	0.90298
768	66		33		0.997452
1592		33		66	0.997452
1886	80	20			0.995493
1888		80		20	0.995493
1889	85			14	0.993533
1890	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain