SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1219

Length: 1324 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1219 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative zinc transporter n=1 Tax=Solanum lycopersicum RepID=A1YIQ6_SOLLC	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	zinc transporter	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion transport	GO:0006829	Biological Process	68%
Blast2go	transmembrane transport	GO:0055085	Biological Process	68%
Blast2go	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	68%
Blast2go	integral to membrane	GO:0016021	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc/iron permease	IPR003689	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSI1

Fln msg:

Fln protein: MGRVDCKCRWVLLAVGILANCLLTCPGFVHSAAAGSDHEDGVKKSDLRDKGLILVKIWCLVIVFAVTFAGGISPYFWRWNQSFLEVGTQFAGGVFLGTALMHFLSDSNQAFQDLGLKEYPMAFLLCSLGYALTMMGDFVLLWVNHRSSVGSECGDGKASEEGGGGGQGRRQGRKAWAGESVLLILALCFHSVFEGMAVGVAESKGGAWRALWTVCLHKVFAATAMAIALLRTKPNRALLSCVAYASAFAISSPVGVSIGIVVDSTTEGPVARWLFAITMGLATGIFIYVALNHMLRGAHAHAQAQGPRSNSCRAREEDDDNGDDGRGPSLYNFLALLLGVGVIAVAMIWDT*

Protein Length: 353

Fln nts: ATGGGATTCCTAGTGGAGGCATTGATGTCTTTGGAGACACAGAGAC_-_ATGGGGAGAGTAGACTGTAAATGCCGATGGGTGTTACTTGCAGTCGGGATACTGGCCAACTGCTTGCTTACTTGCCCTGGTTTTGTTCATTCTGCAGCAGCAGGCAGTGATCATGAAGATGGAGTGAAGAAGAGTGATCTGAGAGACAAGGGTTTAATCCTGGTGAAAATATGGTGTCTGGTTATTGTGTTTGCAGTGACTTTTGCAGGGGGGATTTCTCCCTATTTCTGGAGGTGGAACCAGAGCTTTCTTGAAGTGGGCACTCAGTTTGCAGGGGGTGTGTTCTTGGGCACCGCTCTAATGCACTTCCTCAGTGATTCCAATCAGGCGTTTCAAGATTTGGGGCTGAAAGAGTACCCCATGGCATTCTTGCTGTGCAGCCTGGGCTATGCCTTGACAATGATGGGAGATTTTGTTCTTCTGTGGGTCAATCACAGGAGCAGCGTGGGGAGTGAGTGCGGTGATGGAAAGGCGTCGGAGGAAGGCGGCGGTGGCGGCCAGGGAAGGAGGCAGGGGAGGAAGGCGTGGGCTGGAGAGAGTGTGTTGCTCATATTGGCGCTCTGTTTCCACTCGGTCTTCGAGGGAATGGCGGTGGGCGTTGCTGAGAGCAAGGGGGGTGCTTGGAGAGCCCTGTGGACTGTGTGTCTGCACAAGGTGTTTGCGGCCACGGCCATGGCAATTGCCCTGCTCAGGACAAAGCCCAACAGGGCATTGCTCTCTTGCGTGGCCTATGCTTCTGCGTTCGCCATATCGAGCCCCGTGGGTGTGAGCATCGGCATTGTTGTGGATTCGACCACGGAGGGCCCTGTGGCTCGCTGGTTGTTCGCCATTACCATGGGTTTGGCCACAGGGATCTTCATCTATGTTGCCCTGAACCATATGCTCCGAGGCGCCCACGCTCACGCTCAGGCTCAGGGTCCCCGGAGCAACAGTTGCAGAGCACGTGAAGAAGATGATGACAACGGTGATGATGGACGTGGTCCCTCCCTGTACAACTTCCTGGCTTTGTTGTTGGGAGTGGGAGTCATTGCGGTGGCCATGATTTGGGATACTTGA___TTCGATCTGATAATGATTGAAAATACTTTTCTGGTTGTAAATTTGAGGGATGCAGTAAAATATAAAAGAGAATAATGACAAAGTTGGTATATCTTTGTCGATTGTATGAATCATGTGTGGTTAGGTTTTTTCCACTAGTGTTTTTTAAACATGTTATTTACTAAATGCTTATTTTCATATATATATATATATTATTGAGATTGTGCTGGTCTCCATTAACAC

Fln Alignment:

Contig1219___MGRVDCKCRWVLLAVGILANCLLTCPGFVHSAAAGSDHEDGVKKSDLRDKGLILVKIWCLVIVFAVTFAGGISPYFWRWNQSFLEVGTQFAGGVFLGTALMHFLSDSNQAFQDLGLKEYPMAFLLCSLGYALTMMGDFVLLWVNHRSSVGSECGDGK-ASEEXXXXXXXXXXXRK-----AWAGESVLLILALCFHSVFEGMAVGVAESKGGAWRALWTVCLHKVFAATAMAIALLRTKPNRALLSCVAYASAFAXXXXXXXXXXXXXXSTTEGPVARWLFAITMGLATGIFIYVALNHMLRGAHAHAQAQGPRSNSCRAXXXXXXXXXXXXGPSLYNFXXXXXXXXXXXXAMIWDT
A9NSI1______________MGTVDCKCQWALLAVGILANCLLTCPGFVQ-AAPGSGHDDEAKKSDLRDKGLILVKIWCLVIVFAVTFTGGISPYFWRWNQSFLVVGTQFAGGVFLGTALMHFLSDSNQAFQDLGLKDYPMAFMLCSLGYVLTMLGDCVLLWVNQRNNVGNECGKGKEAAEEGDGSGGRSSGGGSRRRRAAATGESTLLILALCFHSVFEGMAVGVAESKGGAWRALWTVCLHKVFAATAMAIALLRMKPNRPFLSCVAYAFAFGISSPVGVSIGIIVDSTTEGPVARWLFAITMGLATGIFIYVALNHMLRGAH----AQAPRNNSGTTREEDDDDGDDRHGPSLYNFLAFLLGVGVIAVAMIWDT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
381		70		30	1.0
734	90		10		0.90298
737	44		55		1.0
769	14	85			0.993533
812		80		20	0.995493
950		75		25	0.996473
1150			33	66	0.997452
1152			33	66	0.997452
1153	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
31	46	AT AT AT AT AT AT AT AT	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain