SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1214

Length: 1254 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1214 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nudix hydrolase 23 [Arabidopsis thaliana] sp\|P93740.2\|NUD23_ARATH RecName: Full=Nudix hydrolase 23, chloroplastic; Short=AtNUDT23; AltName: Full=ADP-ribose pyrophosphatase; AltName: Full=FAD diphosphatase; Flags: Precursor gb\|AAB63537.2\| expressed protein	-	-	64%
FL-Next	sp=Nudix hydrolase 23, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	nudix hydrolase chloroplastic-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	FAD diphosphatase.	EC:3.6.1.18	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Riboflavin metabolism	00740		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	78%
Blast2go	FAD diphosphatase activity	GO:0047884	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Cation efflux protein	IPR002524	-	-
Sma3	Zinc ribbon, NADH pyrophosphatase	IPR015376	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P93740

Fln msg:

Fln protein: MLITTMMRSWCIGGSPSAIQRLQCILHHKSRVTSLSITPFLRYSMASCSRSFDTTKCSLTKSESDSASSLSPTTVQSNMHKSKVNFCQICGGPSKDCIPEGDDKLRAVCTLCGNVFYENPKMVVGCLVEHNNKVLLCKRKIQPSYGLWTLPAGYLEVGESAAGGAVRETMEEACADVEIVSPFAQLDIPLIGQSYIIFRAQFKIPDFSPGPESLECALFSLDEIPFESLAFSSVYVTLKMYVEDAKVGKFNFHYCMIDKRPGASPSDPNGFQVSQHMRS*

Protein Length: 281

Fln nts: TGCATTGTTTGGTACACATTTTTCACAAGCTATAAGGCAGTAGTGTGTAAG_-_ATGCTGATCACGACGATGATGAGAAGTTGGTGCATTGGAGGATCTCCATCCGCCATTCAAAGGTTACAGTGCATCTTACATCACAAATCCAGAGTCACTTCTCTCTCCATAACTCCCTTTCTACGTTACTCCATGGCAAGTTGCAGCAGATCTTTCGATACAACCAAATGTTCTCTGACCAAATCGGAGTCGGATTCTGCGTCGTCATTATCACCCACAACAGTGCAATCCAATATGCATAAATCAAAGGTCAATTTTTGCCAAATCTGTGGAGGACCGAGTAAGGATTGCATCCCAGAAGGTGATGACAAACTGAGAGCTGTGTGCACGCTTTGCGGCAATGTTTTCTATGAGAACCCTAAAATGGTTGTTGGCTGCCTGGTCGAACATAATAATAAGGTGCTGCTCTGCAAGCGGAAGATACAACCATCTTATGGTCTTTGGACTCTTCCTGCAGGGTACTTGGAGGTGGGAGAATCTGCAGCAGGAGGAGCAGTTAGGGAAACAATGGAGGAAGCTTGTGCAGATGTTGAAATTGTCTCACCATTTGCTCAGTTAGATATTCCTCTTATTGGTCAGAGCTATATTATTTTCCGAGCTCAATTCAAGATACCAGACTTCTCTCCAGGCCCAGAGTCTTTAGAATGTGCCTTGTTCAGCCTGGATGAAATACCATTTGAATCCCTGGCATTTTCATCAGTTTATGTGACTTTGAAAATGTATGTTGAAGATGCCAAGGTTGGGAAATTTAACTTCCACTATTGCATGATTGACAAGAGACCAGGTGCTAGTCCATCAGATCCTAATGGCTTCCAAGTTTCCCAACATATGCGTTCTTGA___TTGCTGGCATTTTCTGGTGAAACCCATTTGATGAACAGATAAACGAAGAACATCAAATCACTTTTTGGATTAAATAGATTTCTTCTCTTGTGAGGGCTAATTCTTTACATGTATAGTTTCTGTGATTACATGTACAAGATTTAAAGATACTGACTGTAATTCTTGCATATCGAAAGTTTCTTAGCTGTGCAATTATCATCCCCAACTGCTCGATACTGGTTTAGTTTTTGTATGGATTTAAACTGTTTCTTGCCACAGCTGGACATATCATGATATCAAGGAATATGCGGCATTGTTGATGATTCAAAATATTTCTTATAGATGATATTCAAGTGATAATTCCAAATATAACATGGGTTGATG

Fln Alignment:

Contig1214___SFDTTKCSLTKSESDSASSLSPT--TVQSNMHKSKVNFCQICGGPSKDCIPEGDDKLRAVCTLCGNVFYENPKMVVGCLVEHNNKVLLCKRKIQPSYGLWTLPAGYLEVGESAAGGAVRETMEEACADVEIVSPFAQLDIPLIGQSYIIFRAQFKIPDFSPGPESLECALFSLDEIPFESLAFSSVYVTLKMYVEDAKVGKFNFHYCMIDKRPGASPSDPNGFQVSQHMR
P93740______________SFKPTRMSSSLPGSDPVAN-SPTFVSVQSAGDVRKIKFCQWCGGPTKHEIPDGEEKLRAICTHCGKIAYQNPKMVVGCLIEHEGKVLLCKRNIQPSHGLWTLPAGYLEVGESAAQGAMRETWEEAGATVEVISPFAQLDIPLIGQTYVIFLAKLKNLHFAPGPESLECRLFALDEIPFDSLAFSSIYVTLNLYLEDLKKGKLKFHYGTINKRPGSSPSDIRAFSLDYHLQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
630	90	10			0.90298
631	10	90			0.90298
732		10		90	0.90298
734	10	90			0.90298
735		90		10	0.90298
789		87		12	0.992554
1070		90		10	0.90298
1106	88		11		0.923564
1154		87		12	0.992554
1197		25	75		0.996473
1198	75	25			0.996473
1199		25		75	0.996473
1200		75	25		0.996473
1235	33		33		0.997753
1236	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain