SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1203

Length: 1203 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1203 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acetyl-CoA carboxylase [Brassica napus]	-	-	47%
FL-Next	sp=Acetyl-CoA carboxylase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	plastid acetyl- carboxylase	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	64%
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Acetyl-CoA carboxylase, central domain	IPR013537	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38970

Fln msg: Overlapping hits, possible frame ERROR between 503 and 451, Distance to subject end: 729 aas, your sequence is shorter than subject: 401 - 2254

Fln protein: DNVKDNNSGEKRWGAMVILKSLHFLQTAVSAALKETTHASSYTTDGAVSSGLVTPMGFGNMLHLALAGVYHPMSLLQDSGDEDQAQERVNKLAKTLKEEKLGSSLRVAGIGMISCLIQRDEGRAPMRHCFHWSSVNQCYEEESLLRHVExxxxxxxxxxxxxxxxxxxINAPSRDRQWHMYTVIDKPAIRRMFLRTLVRRPKSVDGKGELTTSITANSVVKSLIGVLEELELHAHDAMAKSDHVHMFLCVLCAQELSDLVTNSKKVEITRGKEDVAVAEFLRDLAYQVHDMLGVRMHRLAVGEWEIRFRLDSVGVANGAWRIVVTNPTGHTCIVHIYREVQDPNKKEVVYQSPLSVTGPLDGVPVAARYQSLDIIERKRLLARRNNTTYCYDFPLVLRHHW

Protein Length: 402

Fln nts: CTGATAATGTAAAGGATAATAATAGTGGAGAAAAGAGATGGGGAGCTATGGTAATCTTGAAATCTCTTCATTTTCTTCAAACAGCAGTAAGTGCGGCATTGAAGGAGACAACTCATGCATCATCTTATACTACTGATGGTGCTGTTTCAAGCGGACTTGTTACTCCCATGGGCTTTGGGAACATGCTTCATTTGGCTCTAGCTGGAGTGTACCATCCAATGAGTTTATTGCAAGATAGTGGTGATGAAGATCAGGCACAGGAAAGAGTTAACAAATTGGCAAAAACATTGAAGGAGGAAAAACTAGGATCAAGCCTTCGAGTTGCAGGCATTGGTATGATAAGTTGCCTTATACAGAGGGATGAAGGTCGTGCACCCATGCGACATTGCTTTCACTGGTCCTCTGTAAATCAATGTTATGAAGAAGAATCTTTACTTCGCCATGTGGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTAATGCACCTTCACGAGATCGGCAATGGCACATGTACACGGTCATTGACAAGCCAGCTATCCGCAGAATGTTTCTCCGTACCCTTGTCAGGCGGCCTAAATCTGTTGATGGAAAAGGAGAGTTAACTACATCAATAACTGCCAATAGTGTAGTGAAATCTTTGATCGGAGTTTTAGAAGAATTAGAGCTGCATGCCCATGACGCAATGGCCAAATCTGATCATGTGCACATGTTCCTTTGCGTATTGTGTGCACAAGAATTAAGTGATCTCGTTACTAATTCCAAGAAAGTAGAGATAACCCGTGGCAAGGAAGATGTTGCAGTTGCCGAGTTTCTACGTGATTTAGCTTACCAGGTGCATGATATGCTTGGTGTTCGTATGCACCGGCTAGCAGTTGGAGAATGGGAGATCAGGTTTCGATTAGACTCAGTGGGAGTGGCAAATGGAGCATGGCGGATTGTAGTTACGAATCCTACTGGGCATACTTGTATTGTGCATATATACCGAGAGGTGCAGGATCCAAACAAAAAAGAAGTTGTGTACCAGTCCCCATTATCTGTGACTGGACCTCTGGATGGGGTTCCTGTGGCAGCACGATACCAATCCCTGGACATTATTGAACGGAAGCGTCTTCTTGCACGGAGGAATAATACGACATACTGTTATGATTTTCCATTGGTTTTGAGACATCATTGG

Fln Alignment:

Contig1203___EKRWGAMVILKSLHFLQTAVSAALKETTHASSYTTDGAVSSGLVTPMGFGNMLHLALAGVYHPMSLLQDSGDEDQAQERVNKLAKTLKEEKLGSSLRVAGIGMISCLIQRDEGRAPMRHCFHWSSVNQCYEEESLLRxxxxxxxxxxxxxxxxxxxxxINAPSRDRQWHMYTVIDKPA-IRRMFLRTLVRRPKSVDG----KGE--------LTTSITANSVVKSLIGVLEELELHAHDAMAKSDHVHMFLCVLCAQELSDLVTNSKKVEITRGKEDVAVAEFLRDLAYQVHDMLGVRMHRLAVGEWEIRFRLDSVGVANGAWRIVVTNPTGHTCIVHIYREVQDPNKKEVVYQSPLSVTGPLDGVPVAARYQSLDIIERKRLLARRNNTTYCYDFPL
Q38970______________KRKWGAMVIIKSLQFLPSIISAALRETKH-NDYETAGAPLSG--------NMMHIAIVGINNQMSLLQDSGDEDQAQERVNKLAKILKEEEVSSSLCSAGVGVISCIIQRDEGRTPMRHSFHWSLEKQYYVEEPLLRxxxxxxxxxxxxxxxxxxxxxQYTPSRDRQWHLYTVTDKPVPIKRMFLRSLVRQATMNDGFILQQGQDKQLSQTLISMAFTSKCVLRSLMDAMEELELNAHNAAMKPDHAHMFLCILREQQIDDLVPFPRRVEVNAEDEETTVEMILEEAAREIHRSVGVRMHRLGVCEWEVRLWLVSSGLACGAWRVVVANVTGRTCTVHIYREVETPGRNSLIYHS-ITKKGPLHETPISDQYKPLGYLDRQRLAARRSNTTYCYDFPL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
645	20	80			0.995493
648	20		80		0.995493
650	20			80	0.995493
653		20		80	0.995493
657			20	80	0.995493
659	80			20	0.995493
663	20			80	0.995493
1083	75			25	0.996473
1090		25		75	0.996473
1094	75	25			0.996473
1095	25			75	0.996473
1099			25	75	0.996473
1101		25	75		0.996473
1102	25			75	0.996473
1104			25	75	0.996473
1105	25	75			0.996473
1107			25	75	0.996473
1137	66	33			0.997452
1139	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain