SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1183

Length: 1693 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1183 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nop14 multi-domain protein	-	-	1.0e-08	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	DDT domain	IPR004022	-	-
Sma3		IPR012287	-	-
Sma3	DDT domain, subgroup	IPR018500	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAM7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 478 - 188

Fln protein: M*KRGIELLRTCEACHEVYWSRDKHCSCCHGTFESSRLELKFSQHVLECEEKRRRNDTTWRLQGPTWSFPSRIQLLKAVIAAVEVAIPSEALKPFWTEGYRRSWGLTLRSVTSPAELLQIITQLEGAVNRDWLSSNFETTKELLGVISPETGVNESNFVSGEVPLLPWIPHTTAAVALRLMVFDYSLAYSLDQKPENQTVNEYEDINNMQSNVASRTVQHLEACENVSPIEEDKREDTGTDSGNGRNIGRGRGRVRGRGRGRGGRSITTRTEIGLDSVNRDSKRKLQFSEDGTCVTNEDQKKVRGRTRRGRARGRGRGRVTRSSKHRQLSVQRSGEKEEDPNHLTNIRMGMQNKPEEMGEDDDLSECSQSIEGEEWEGQDGFREAGNHGDQHYNEEDNVSESSEEEEDIDEACENGQDTEDEFEDEDAKYEDDYFARDGEAEESEAGEAAEVDAESEDESEDDDDEESTSVSSKNSD*

Protein Length: 479

Fln nts: AATGTAGAAAAGAGGTATAGAGTTGTTGCGTACTTGCGAAGCTTGTCATGAGGTATATTGGTCAAGAGACAAACATTGTTCTTGTTGCCATGGAACTTTTGAAAGTTCTAGGTTGGAATTAAAATTTTCTCAACATGTCCTTGAGTGTGAAGAAAAGAGAAGAAGAAATGATACAACTTGGAGGTTGCAAGGTCCAACTTGGTCATTCCCATCACGAATTCAGCTTCTCAAAGCTGTGATAGCTGCAGTTGAGGTTGCTATCCCTTCAGAAGCACTTAAACCTTTTTGGACAGAGGGTTATCGGAGGTCTTGGGGTCTAACTTTGAGATCTGTAACATCTCCAGCTGAACTCCTTCAGATAATCACACAGTTAGAAGGAGCTGTTAACCGCGATTGGTTGTCATCAAATTTTGAGACAACAAAGGAGTTGTTGGGTGTTATTTCTCCTGAAACTGGAGTTAATGAGAGTAATTTTGTATCAGGAGAGGTTCCCCTGCTTCCTTGGATACCCCACACAACAGCAGCTGTGGCCCTGCGTCTTATGGTGTTTGACTACTCTCTTGCATATAGCTTGGACCAAAAACCAGAAAATCAAACAGTAAATGAATATGAGGATATAAATAACATGCAGTCAAATGTTGCTAGTAGGACTGTCCAACATCTGGAGGCTTGTGAAAATGTATCCCCAATCGAAGAAGACAAGAGAGAAGATACTGGGACAGATTCTGGTAATGGAAGAAACATTGGACGTGGTCGAGGAAGAGTTCGAGGACGAGGTCGTGGTCGTGGTGGAAGAAGTATTACAACAAGAACAGAGATTGGATTAGATAGTGTAAACAGAGATTCAAAACGGAAGCTTCAATTTTCTGAAGATGGTACTTGTGTCACTAATGAAGATCAAAAGAAAGTAAGAGGACGGACACGAAGAGGGCGTGCACGTGGACGAGGGCGTGGAAGAGTCACTCGCAGTTCCAAACATAGGCAACTGAGTGTGCAAAGGAGTGGGGAAAAAGAAGAAGACCCAAACCATTTGACAAATATAAGAATGGGCATGCAAAATAAACCTGAAGAAATGGGTGAGGATGATGATCTAAGTGAGTGTTCCCAGAGCATTGAAGGAGAGGAATGGGAAGGGCAGGATGGTTTTAGAGAAGCTGGGAATCATGGAGATCAGCATTACAATGAAGAAGATAATGTTAGTGAGTCATCTGAAGAGGAAGAAGATATAGATGAAGCCTGTGAAAACGGACAAGATACAGAAGATGAGTTTGAGGATGAAGATGCGAAATATGAGGATGATTATTTTGCTAGAGATGGTGAAGCTGAAGAAAGTGAGGCTGGTGAAGCAGCTGAAGTTGATGCTGAGTCAGAAGATGAGTCAGAAGATGATGATGATGAGGAATCGACGTCAGTATCATCCAAAAATAGTGACTAA___GGTTGTGACTTTTCACTTCTCCAATGTAATATTTATACCCAGTTAAAATTCTTTTAGTAGTGGGGAAGGGGCCAGTGCTATTGTGGATAAGCTTCAATTAGAAGTTAATTGACAAATTCACTCTGTAAGTGGATGAGTACCCTAGATTCCTAACTTGATCTCATTAATCTCTAAAATTGCTCTTGAAGAATACTGTTCAAATTTGATGTTCACTATATTTATTTAAATCAAATGATTTTGTTGATGGCTTCTGAACTT

Fln Alignment:

Contig1183___KRGIELLRTCEACHEVYWSRDKHCSCCHGTFESS-RLELKFSQHVLECEEKRRRNDTTWRLQGPTWSFPSRIQLLKAVIAAVEVAIPSEALKPFWTEGYRRSWGLTLRSVTSPAELLQI
D5AAM7______________KRGIELLRTCDGCHEVYWSKDKHCSCCHGTFEGSFRFEVKFSQHVLECEEKRRRNDTNWRLQGPTWSFPSRIQLLKAVIAAVEVSIPSDALKPFWTEGYRRSWGLTLRSATSPAELLQL

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
856		16		83	0.994512
1127	90		10		0.90298
1128	10			90	0.90298
1129	90		10		0.90298
1132	10	90			0.90298
1133	90	10			0.90298
1136	90	10			0.90298
1137		10	90		0.90298
1140	10			90	0.90298
1141	90		10		0.90298
1174		90	10		0.90298
1177	10			90	0.90298
1178		10		90	0.90298
1179	10		90		0.90298
1180			10	90	0.90298
1181		10	90		0.90298
1182		10		90	0.90298
1183	11		88		0.923564
1184	11		88		0.923564
1188	88	11			0.923564
1189	11			88	0.923564
1191		88	11		0.923564
1193	88	11			0.923564
1204	14		85		0.993533
1211			14	85	0.993533
1212	14	85			0.993533
1213		85	14		0.993533
1217		14		85	0.993533
1222	85		14		0.993533
1223	85		14		0.993533
1225		14		85	0.993533
1228	14			85	0.993533
1230			14	85	0.993533
1437	33		66		0.997452
1541		20		80	0.995493
1542		20		80	0.995493
1544	20			80	0.995493
1547	75	25			0.996473
1549	75	25			0.996473
1550	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
296	309	TCA TCA TCA TCA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain