SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1159

Length: 1303 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1159 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	Isoform 2 of Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23	-	-	44%
Blast2go	pumilio 23	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	63%
Blast2go	primary metabolic process	GO:0044238	Biological Process	63%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	63%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	63%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	63%
Blast2go	binding	GO:0005488	Molecular Function	63%
Blast2go	catalytic activity	GO:0003824	Molecular Function	63%
Blast2go	nucleolus	GO:0005730	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015706	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C552-2

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 434 - 731

Fln protein: LDKTSLRAFPNLLKFVASKILEYSRDSVAVLRVDTFGSLVLQTILKLLVGDKEAVVRVITVLLGCSENNVMKEGKVLEDATVQNVLDLMMDPIGSHLMEVILEVAPDSLYMEILNRYFRHSLLEIATHESGNFVVQSLVSSSRHQGQVNMIWGEIGSKFTELLKARKPGVVASLIGACRRFQTHQRECCRALAHAVNSDSASPNCIVPHVLHLENFSSDTGRSKWQWPSGNKMSVLGCVMLQIIFNYPSDFIQQFCSSFASMEIDHILEAAKDPGGSRVIEAFLSSNAPLKHKHRVISKLRGHFGELAQRPSSSFTVSKCFLAADLALKEAIASELAYVQAELSRLKHGPHLLRICDVTRYSKGPEQWRSSQSSKQSTRQAFAEVFGSEGEAKREDDTIMVSCNEEATEIPKKKSKKSKRDRGMNNIGEAKRED

Protein Length: 435

Fln nts: CTGGACAAGACATCATTGCGGGCTTTTCCAAATCTGTTGAAGTTTGTTGCAAGCAAGATCTTAGAATATTCCAGAGATAGTGTTGCAGTTCTACGAGTAGACACCTTTGGCAGTCTTGTCTTACAGACCATTTTGAAATTACTAGTGGGAGACAAAGAAGCTGTGGTAAGGGTGATAACTGTCCTTTTGGGTTGTTCTGAAAACAATGTTATGAAAGAAGGCAAGGTGTTAGAGGATGCTACAGTACAGAACGTCTTAGACCTTATGATGGATCCAATTGGCAGCCATTTAATGGAGGTTATTCTGGAGGTGGCACCAGATTCGCTTTACATGGAAATCTTGAATCGTTATTTTCGGCATTCCTTGCTTGAAATTGCAACTCATGAATCTGGCAACTTTGTTGTCCAATCATTGGTTTCTTCTTCAAGACACCAGGGTCAAGTAAATATGATCTGGGGTGAAATTGGTTCTAAGTTCACAGAGCTACTAAAAGCGAGAAAACCAGGAGTAGTTGCTTCTCTCATAGGTGCTTGTCGCCGTTTTCAGACGCATCAACGAGAGTGTTGTCGAGCATTAGCCCATGCTGTCAATTCTGATTCTGCTTCTCCAAACTGCATTGTACCACATGTTCTTCATCTGGAAAATTTCTCAAGTGATACAGGGAGATCCAAGTGGCAATGGCCATCTGGAAATAAGATGTCGGTTCTTGGTTGTGTAATGTTGCAAATCATTTTCAATTATCCAAGTGACTTCATTCAGCAGTTTTGCTCAAGCTTTGCATCCATGGAAATTGATCATATTCTTGAAGCTGCAAAAGATCCTGGTGGTAGTCGAGTAATTGAAGCTTTCCTTTCTTCCAATGCTCCATTAAAGCATAAGCATAGAGTTATTTCAAAGTTACGTGGACATTTTGGTGAATTGGCACAGCGGCCATCTAGCTCATTTACTGTGTCAAAGTGCTTTCTAGCAGCTGATTTGGCACTTAAGGAGGCTATAGCTTCTGAACTGGCCTATGTGCAAGCAGAACTCTCAAGATTAAAACATGGTCCACATCTGTTAAGAATTTGTGATGTGACTAGGTATTCAAAAGGACCTGAACAGTGGAGGTCATCTCAAAGTTCAAAACAATCAACTCGTCAGGCCTTTGCTGAGGTATTTGGTTCTGAAGGGGAAGCCAAAAGGGAAGACGATACTATTATGGTGTCTTGCAATGAAGAAGCAACAGAAATCCCTAAAAAAAAGAGCAAAAAAAGTAAGAGGGATAGAGGGATGAATAATATAGGGGAAGCCAAAAGGGAAGACG

Fln Alignment:

Contig1159___RAFPNLLKFVASKILEYSRDSVAVLRVDTFGSLVLQTILKLLVGDKEAVVRVITVLLGCSENNVMKEGKVLEDATVQNVLDLMMDPIGSHLMEVILEVAPDSLYMEILNRYFRHSLLEIATHESGNFVVQSLVSSSRHQGQVNMIWGEIGSKFTELLKARKPGVVASLIGACRRFQTHQRECCRALAHAVNSDSASPNCIVPHVLHLENFSSDTGRSKWQWPSGNKMSVLGCVMLQIIFNYPSDFIQQFCSSFASMEIDHILEAAKDPGGSRVIEAFLSSNAPLKHKHRVISKLRGHFGELAQRPSSSFTVSKCFLAADLALKEAIASELAYVQAELSRLKHGPHLLRICDVTRYSKGPEXXXXXXXXXXXXXQAFAEVFGSEGEAKREDDTIMVSCNEEATE
Q9C552-2____________QGFPGMLTYLLSGLLSCSREDMKYLQVDQYSSLVLQTALRLMLKQDEQLLEIIPLILRCNSTNKKVEGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNKVFKNSLFELSVDRCANFVIQALISHARDQEQMGIMWEELAPRFKDLLEQGKSGVVASLIAVSQRLQSHENKCCEALVGAVCSTNESRISILPRLLFLDYYFGCRDKSTWEWAPGAKMHVMGCLILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSSGARVIEAFLASDAATKQKRRLIIKLRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASELLDVKVDLSKTKQGPYLLRKLDIDGYASRPDQWKSRQEAKQSTYNEFCSAFGS-NKSNFPKNTFVSDASEDAAQ

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
251	80		20		0.995493
387	50			50	1.0
445		14		85	0.993533
461		12		87	0.992554
479	71		28		1.0
494	85		14		0.993533
517		85		14	0.993533
518		85	14		0.993533
520			14	85	0.993533
521			85	14	0.993533
524		14		85	0.993533
527	85	14			0.993533
531		85	14		0.993533
533		14		85	0.993533
534	14		85		0.993533
535	85	14			0.993533
538	85		14		0.993533
605		83		16	0.994512
618		20	80		0.995493
767	16		83		0.994512
768		16	83		0.994512
769	16	83			0.994512
770			83	16	0.994512
771	83			16	0.994512
927	20		80		0.995493
931		75		25	0.996473
960		80		20	0.995493
976		20		80	0.995493
1086	12	87			0.992554
1087	12	87			0.992554
1213	16		66	16	0.988813
1215	83			16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain