SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1143

Length: 1897 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1143

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 4 [Arabidopsis thaliana] sp\|Q9C5D2.1\|FBL4_ARATH RecName: Full=F-box/LRR-repeat protein 4; Short=AtFBL4 gb\|AAK26038.1\|AF360328_1 putative F-box protein family, AtFBL4 [Arabidopsis thaliana] gb\|AAK32821.1\|AF361808_1 AT4g15470/dl3775	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	f-box lrr-repeat protein 4-like	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	76%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: your sequence is longer than subject: 481 - 335

Fln protein: NVVLGRGCQRLEKLCLIWCSAVTSSGLASVAQHCSVLKALDLQGCYISDQGLTAVGEQCKQLEDLNLRFCEGLTDKGVTAIAIGCAKTLKALGIAACARITDRAMEAVGVHCHCLEKLTLDSESVNDAGLLAIAQGCTALNYLHLQCVNVTDEALKAVGRFCISLKTLILCSFQKFTDRSLQAIGNGCKTLNVLSLSDCYFLSDQSLVAIANGCSELKRLELNGCHNIGTNGLESIGRYCRRLTELVVKYCQNIGDSAFLEIGNGCTQLQALHLVDCSSISDAAICHVAKGCRNLKKLHVRRCYKVGDEGITAVGRNCRHLTDLSLRFCDRIGDDALISIGNGCASLRQLNVSGCYRVGDVGVTAISKGCPLLIHLDVSVCQNVGDMGLAALGEGCPYLKDIVLSHCRKITDIGLGYLVKHCTKLESCHMVYCPSITAAGVATVVSSCINIRKVLVEKWKVTQRTRRRAAPVLTELCLEV*

Protein Length: 482

Fln nts: AATGTTGTTCTTGGACGGGGTTGTCAAAGACTGGAAAAGCTGTGTTTAATATGGTGCTCTGCAGTCACAAGTTCAGGCCTAGCATCAGTGGCTCAGCATTGTAGCGTTTTGAAGGCCTTAGATTTACAGGGTTGCTATATAAGTGATCAAGGTCTTACAGCTGTAGGAGAACAATGCAAACAACTTGAGGATTTGAATCTTCGGTTTTGTGAGGGTTTGACAGACAAAGGTGTGACAGCAATAGCAATTGGCTGTGCAAAGACACTGAAAGCCCTTGGCATTGCAGCATGTGCAAGGATAACTGATAGAGCTATGGAAGCTGTTGGAGTCCACTGTCACTGTCTTGAAAAATTAACCCTGGATTCTGAATCTGTTAATGATGCTGGATTGCTGGCAATAGCTCAGGGTTGCACTGCTTTAAATTATTTGCACTTACAGTGTGTAAATGTCACAGATGAAGCCTTAAAAGCTGTGGGTCGATTCTGTATCTCACTAAAGACACTTATACTATGCAGCTTCCAGAAATTTACAGACAGGAGCCTTCAGGCAATAGGAAATGGATGCAAGACATTAAATGTTCTTTCTTTGAGTGACTGTTACTTTTTAAGTGACCAAAGTTTAGTTGCAATTGCTAATGGATGTAGTGAACTTAAACGACTTGAACTAAATGGTTGTCACAACATTGGTACTAATGGCCTTGAATCCATTGGGCGATATTGCCGGAGGCTTACTGAGCTCGTGGTTAAGTATTGCCAAAATATTGGGGATAGTGCCTTCTTGGAGATTGGAAATGGGTGTACACAATTACAAGCTCTTCATTTGGTTGATTGCTCAAGTATTAGTGATGCTGCAATTTGCCATGTAGCAAAAGGCTGCAGAAATTTGAAGAAATTGCACGTGCGGCGATGTTATAAGGTTGGAGATGAAGGAATCACTGCTGTGGGAAGAAATTGTAGACATCTCACTGACTTGAGTCTTCGGTTTTGTGACAGAATTGGGGATGATGCTCTCATTTCTATTGGGAATGGCTGTGCTTCTCTGCGCCAATTGAATGTTAGTGGTTGCTATCGAGTTGGTGATGTTGGAGTTACCGCCATCTCAAAAGGCTGCCCTCTTCTAATTCACCTGGATGTTAGTGTGTGTCAGAATGTCGGTGACATGGGACTGGCTGCATTGGGTGAAGGATGCCCATATCTAAAAGACATTGTGCTATCTCATTGTCGGAAAATCACTGATATCGGTCTGGGCTATTTGGTAAAACACTGCACAAAACTTGAATCATGTCATATGGTGTATTGCCCATCAATAACTGCTGCTGGGGTTGCTACTGTAGTTTCTAGTTGTATAAATATAAGGAAGGTGTTGGTCGAGAAATGGAAAGTTACCCAAAGAACAAGGAGACGTGCTGCTCCAGTGTTAACAGAACTTTGTCTGGAAGTGTAA___TGCAGAATTATCACCTACTCGCTTCCACATGCCCAACCATTCAATGAGACCATAGTCTAATTCAATTTGCTTAGTTTCTTCTTTTGTGTTATGTAAGATCAACAATCATTAGACTTTAAGACAGATTCCGTTGTTGTCTTTACTGTTGCAGTTCCTGAATTTGTAATATTGCAACAATCCTGTCACTTTAAGGCAGGAAATATGTGCTTCATAGTGCAAACTGTCCATAGATTTCCAGGTAGCATAAAATAATACAATTCATTTATCCATAGGAGAAATTAACATCACTGCTTCATTCATAGCCATTAAATTTACTCTGGAGTCAAAATAAAATTATAAATGGCTATCCTCCCTGACATATTTTCCAAATGGCAATGCAAATCGAGTCTGTAAATTCTCTTATTTTGCAACTCTTGGCAAACATAGCAAACTATAGCGTGAAGGATACACAATT

Fln Alignment:

Contig1143___LGRGCQRLEKLCLIWCSAVTSSGLASVAQHCSVLKALDLQGCY-ISDQGLTAVGEQCKQLEDLNLRFCEGLTDKGVTAIAIGCAKTLKALGIAACARITDRAMEAVGVHCHCLEKLTLDSESVNDAGLLAIAQGCTALNYLHLQCVNVTDEALKAVGRFCISLKTLILCSFQKF
D5A998______________IGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSIS-RLQKLHNLEIRGCPGISSAGLSAIALGC-KRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNGFASALLDCESLKKLKLFEGLKF

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1218	87		12		0.992554
1220			12	87	0.992554
1221	12		87		0.992554
1222		12		87	0.992554
1224			87	12	0.992554
1226	87		12		0.992554
1227	87	12			0.992554
1228	87			12	0.992554
1229	87		12		0.992554
1324		14		85	0.993533
1329		85		14	0.993533
1407	14	71			0.984337
1408	14			85	0.993533
1409		14	85		0.993533
1411			14	85	0.993533
1412		71	14	14	0.984337
1413		85	14		0.993533
1414	85		14		0.993533
1415		14	85		0.993533
1418	14			85	0.993533
1419		28		71	1.0
1421	71			28	1.0
1422		85		14	0.993533
1464		66		33	1.0
1520	16		83		0.994512
1583			91	8	0.999766
1599		22		77	1.0
1711			15	84	0.999986
1770			20	80	0.995493
1771	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain