SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1141

Length: 1577 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1141 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tryptophan/tyrosine permease [Arabidopsis thaliana] gb\|AAV84485.1\| At5g19500 [Arabidopsis thaliana] gb\|AAW30037.1\| At5g19500 [Arabidopsis thaliana] gb\|AED92718.1\| Tryptophan/tyrosine permease [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	70%
Blast2go	tyrosine-specific transport	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	79%
Blast2go	amine transmembrane transporter activity	GO:0005275	Molecular Function	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Tryptophan/tyrosine permease	IPR018227	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9GEN1

Fln msg: W2: There is no M at the beginning,

Fln protein: VSPPRVDLVPVQFQKTSQYERLFSNLNEATLRREPGSMTGSVLLVAGTTIGAGILAIPAVTQEAGFLASAVTCLLCWLYMVVTGILVAEVNVNTMCELGSGGVSLVSMAMRTLGKGGVQVACWSYLFIHYALLVAYVARSSEAITSFLGVPLWESAIIFSSIFGGICYWGSQRTIGAINGFLVFGILISFLVLLGVAATDIEWSSLLQANFKAVPKSIPIICLSFVYQNVVPVLCTNLEGNLPKVRTAIVVGTAIPLVMFLVWDAVILGTISHFNVNGVRMVDPLLQLRSSSGMVGPIVETFSFLAIGTSYIGFVLGLADFLSDLLKLPSGRRQQPLPYLLTIIPPLVLALLNPDIFFKALDFAGTYGVLLLFGILPAAMSWSERYTERCVPPIVPSILPGGRVTLCIVMGAAGFVIASEFLENFLP*

Protein Length: 429

Fln nts: AGTTTCCCCTCCCCGTGTCGACCTCGTCCCCGTGCAATTCCAGAAGACTTCCCAGTACGAGAGATTATTTTCAAATCTCAATGAGGCCACCCTCAGAAGGGAGCCCGGGAGCATGACTGGTTCCGTCTTATTAGTGGCGGGCACTACGATAGGAGCAGGAATCTTGGCCATTCCAGCAGTCACTCAAGAAGCTGGTTTTTTAGCATCAGCGGTGACCTGTTTGCTCTGCTGGTTGTATATGGTTGTGACAGGGATTTTGGTTGCAGAGGTGAATGTTAATACAATGTGTGAGCTTGGCTCAGGTGGGGTATCTCTAGTATCGATGGCAATGCGAACACTTGGTAAAGGAGGAGTGCAAGTTGCTTGCTGGTCATACTTGTTCATTCATTATGCACTCTTGGTTGCATATGTGGCTCGCTCTTCGGAGGCAATTACAAGTTTTCTTGGCGTTCCATTATGGGAAAGTGCCATCATATTTTCATCAATATTTGGAGGGATATGCTACTGGGGAAGCCAGCGAACCATTGGTGCCATCAATGGGTTCTTGGTATTTGGAATCCTAATTTCATTTTTGGTTCTTCTGGGAGTAGCTGCAACTGACATAGAATGGAGCTCATTGTTACAAGCGAACTTTAAAGCTGTTCCTAAAAGCATACCCATTATTTGTTTATCTTTTGTATACCAGAATGTGGTGCCAGTTCTCTGTACGAATCTTGAGGGCAATCTGCCAAAAGTAAGGACTGCAATTGTCGTAGGCACAGCGATCCCTTTGGTTATGTTCCTTGTCTGGGATGCCGTTATTCTTGGTACTATTTCACATTTCAATGTGAATGGAGTCCGTATGGTAGATCCATTATTACAATTACGATCTTCTAGTGGAATGGTTGGACCAATCGTGGAAACATTCTCTTTCCTTGCAATAGGAACCTCATACATTGGATTTGTTTTGGGCCTTGCCGACTTTCTTTCTGATTTGTTGAAACTACCATCAGGACGGAGGCAGCAGCCACTTCCTTACTTGTTGACCATTATTCCTCCTCTAGTTTTGGCATTGTTGAACCCAGATATCTTCTTCAAGGCTTTAGATTTTGCAGGAACTTATGGAGTTCTGTTGTTGTTTGGAATTTTGCCAGCTGCGATGTCATGGTCAGAGAGGTATACAGAAAGATGCGTACCTCCTATAGTTCCATCCATTCTTCCTGGGGGCAGAGTTACTCTTTGTATTGTGATGGGTGCAGCTGGTTTTGTGATTGCTTCGGAGTTTCTTGAAAACTTTCTACCTTAA___TAAGCTTCTGAGGATAGTTCTGTTAGTTAGATGACAAAATCATAGAATCTATTCTTATGGATTGTGGTTGAGCACAGGTATTTGAAGAGAAAGACTTACATTTCATTGTTGGACTGGAATTTTTGAATCAGTAACCCAGTAACTACAATGTTAGTATTTAATTGGTTATAGGTATTTTGACTCTTCCCCATTTTCTACTATTTAGTTGTGTCCTAGTTCTAGCAATGCAACGTTTTCAATAACACGCTTTTAACTGTCAATTTTTCCCATTTCTAAAGAAGTATTATGCAAG

Fln Alignment:

Contig1141___QKTSQYERLFSNLNEATLRREPGSMTGSVLLVAGTTIGAGILAIPAVTQEAGFLASAVTCLLCWLYMVVTGILVAEVNVNTMCELGSGGVSLVSMAMRTLGKGGVQVACWSYLFIHYALLVAYVARSSEAITSFLGVPLWESAXXXXXXXXXICYWGSQRTIGAINGFLVFGILISFLVLLGVAATDIEWSSLLQANFKAVPKSIPIICLSFVYQNVVPVLCTNLEGNLPKVRTAIVVGTAIPLVMFLVWDAVILGTISHFNVNGVRMVDPLLQLRSSSGMVGPIVETFSFLAIGTSYIGFVLGLADFLSDLLKLPSGRRQQXXXXXXXXXXXXXLALLNPDIFFKALDFAGTYGVLLLFGILPAAMSWSERYTERCVPPIVPSILPGGRVTLCIVMGAAGFVIASEFLENFL
B9GEN1______________QQEYEVERLFSNLNQVTLKREPGSLSSAILLVAGTTIGAGILAIPAVTQESGFLASSVACILCWIFMVTTGLLIAEVNVNTMCELGSGGVSLVSMAKRTLGVAGVQFSCWSYIFIHYALLIAYVARSSDILTNFLGIPLWESATLFSLVFGGICYFGSQRFIGAVNGVLVFGIIISFTSLVVAASGDLHLDALLKANFSAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVLGTAIPLGLFLVWDGVILGSISTPEM-ADKIADPLQQLLSTNGVVGPIIQAFSLLAIGTSYIGFVLGLSDFLADFLKLPAG-ENKPLPYILTLIPPLVLALLDPEIFFKALDFAGTYGVLVLFGIIPAAMAWSDRYSSSSTSIKLPQLVPGGKVTLSLVMGAAGCIILSEILENFM

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
557	81	18			0.999994
563	80	20			0.999996
565		20	80		0.999996
568	80	20			0.999996
572	12		87		0.992554
573		87	12		0.992554
577	12			87	0.992554
581	12			87	0.992554
582	12	87			0.992554
583		87	12		0.992554
587	12	87			0.992554
588		12		87	0.992554
591		12		87	0.992554
598			16	83	0.994512
599	16			83	0.994512
602	83	16			0.994512
606	83		16		0.994512
610		16	83		0.994512
611	83		16		0.994512
613	83	16			0.994512
765	75	25			0.996473
768	75			25	0.996473
803		33		66	0.997452
805	66			33	0.997452
806		66		33	0.997452
973			25	75	0.996473
975			25	75	0.996473
977	25			75	0.996473
1402	25			75	0.996473
1407		25	75		0.996473
1413		75		25	0.996473
1416	75	25			0.996473
1419		25		75	0.996473
1420			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain