SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1128

Length: 2583 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1128
TTAATTTTTGTGGGCTTTGATGCAGGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCAGCCAGGGGGTCTGAAATCTAAGCGCTGTATGCATGAGGCATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAACTGCTGGAGCACGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCAGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTTTCATCGGAAATTGCTACGCGGTGAGCCCCGCTATACTCGTCAGGAGGTTCCCAAGGATAAAGTCCGTTGCGCTCAAGGGGAAGCCCCATTTTGCGGACTTTAACATGGTGCCCCCTGGCTGGGGCGCTGATATCCATCCCTGGCTGGTCGCCATGGCGGAGGCGTACCCTTGGCTGGAAGAACTCAGGCTTAAGCGCATGGTGATCACTGACGAGAGCCTTCAGCTCCTCGCGCGTTCTTTTCCCAATTTCAAGGTTCTCGTGCTTACCAGTTGCGACGGCTTCAGCACGGATGGGCTCGCTGCCATTGCCGCGCACTGCAGGCATATTACAGAGCTAGATTTGCAGGAGAGTGACATTGATGATCGTGGTGGCAATTGGCTAAGTTGTTTTCCGGACTCGTGCACATCGCTTGTTTCCTTAAACTTTGCATGTCTGACTAAGGAGGTGAACTTTGAAGCACTTGAGAGATTAGTAGCAAGATGTACTTCTCTGAGGAGTTTGAAATTGAATCGTTTGGTGCCACTAGAGCTACTACATCGCCTTTTGGTTCGTGCCCCACATCTGGAGGATTTGGGTACAGGTGCATACCTTCACGAGCCACGCACTGAACAATATTCCAAGCTCAAGGCTGCCTTACAGAATTGCAAGGGACTTCAAAGCTTATCTGGTTTTTGGGAGGTTGCACCTGGTTATCTTCCCTTGGTTGAGTCCCTCTGTTCAAATTTGACCAGTCTGAACTTGAGTTATGCAACAATTCAAAGTGCAGAACTTACCAACCTCCTTGGTCACTGCCACAAACTACAACGCTTATGGGTATTGGATTATATTGAAGATAAAGGGCTTGAAGTGGTTGCCTCAACCTGCAAAGATTTGCAGGAACTGCGTGTTTTCCCGTTAGACCCTTATGGTCAAGGAGCCGTGACAGAGGAAGGCCTTGTGAATATTTCAAGGGGCTGTCCTAAGTTGACCTCTGTACTATATTTTTGTTGTCAAATGACAAATGCAGCTTTGATTACTGTTGCAAGAAATAGCCCTCTTCTCACCTGTTTCCGCTTATGTATTATTGATCCCACAAGCCCAGATCATTTGACAAAGCAACCCCTGGATGAAGGGTTTGGAACAATTGTTCAGTCTTGCAAAAGTTTACGGCGTTTATCTATGGCTGGCTTGCTTACAGACAAGGTCTTTCAGGTGATTGGTACTTATGGCAAGTGTTTGGAGATGCTTTCTGTTGCTTTTGCTGGTGATAGTGATTTTGGGATGCAATGTGTACTATCAGGCTGTACAAATCTCCGTAAGTTTGAGGTAAGGGACAGCCCATTCGGTGATTTAGCTCTTTTAGCAGGTTCAGAAAAGTATGAATCAATGCGATCCCTTTGGATGTCATCCTGCTCTGTTACCGTGCATGGTTGCAAGGAATTGGCTGCAAAAATGCGCAGCTTGAATGTTGAAGTTATCCATGACAGGGATCAGTTTGAAGATATAAGTACCATGACTCATCCCGTAGATGGACTCTATGTGTACCGGTCAGTTGCTGGACATCGGAAGGATACACCACATTTCATTTACACTATGTAAGTGGTCATGTCATTTCTCACGTACCATGAATTAAGCTGGCATGTTCTTGCTAAAGCAGCAGAGTACCAAGCATGGATGGGATTTTCCTCTCATACACCATGGATTATGCCAGAAAATTCTTGTGATACTGACACTCTCACCTTCCATCGCAAAATTTGTATGCCTTGTACAGACAAATTTCAGCATTCAAATACTGTTTGGCATAGAGTTATTACTGTCATTTCAGCACTATGCGGCAGTATCCTCTAATCTAGGACTGTTCGATTGATCTTTGGACTCCCTTAATTATGCTACAGATTATTTAAATGCAGCAATTGAACAGCCTGGCAGACTTCTAGTCTGGAATTAGGCAGTAAATAGTTATTTAATTATATAGGCGTACAGTGTGATTTCGTTTCATTTTTTAGAGAACCCTTCCGGTTACCGCTATTTAAGACTGCCATGTTCAGAAAATCTTATTTGATTGAAGAGAAGACAACATTCTCTGCGCTATTTCTTTCTTCTTGTGTGTTGATCATCTGTTGCCCTACTTCTTAGACAAATGCCGTACATTCTTGTTTGTTCTTCTGTGCAGTGCATTGTGCACATTCCAGAGGTCTTCTATGCAATAATTGTTCACATCAGCACTGTATGGCTCAACAATGGGGACTGTTACTGAGACACATGCTTAGCATGCTGTAAACTTTTCAGGTGTCTGTAATTTTTTTCTCAGATG

Ace file of the UniGene sp_v2.0_unigene1128 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaTIR1 n=1 Tax=Pinus taeda RepID=C9EHS7_PINTA	-	-	93%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaTIR1; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	transport inhibitor response 1	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	79%
Blast2go	lateral root formation	GO:0010311	Biological Process	79%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	79%
Blast2go	stamen development	GO:0048443	Biological Process	79%
Blast2go	response to molecule of bacterial origin	GO:0002237	Biological Process	79%
Blast2go	pollen maturation	GO:0010152	Biological Process	79%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	79%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	79%
Blast2go	inositol hexakisphosphate binding	GO:0000822	Molecular Function	79%
Blast2go	receptor activity	GO:0004872	Molecular Function	79%
Blast2go	auxin binding	GO:0010011	Molecular Function	79%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C9EHS7

Fln msg:

Fln protein: MVVRRMSSFPDELLEHVLAFLSSHRDRNAVSLVCKSWFRIEAGSRQRVFIGNCYAVSPAILVRRFPRIKSVALKGKPHFADFNMVPPGWGADIHPWLVAMAEAYPWLEELRLKRMVITDESLQLLARSFPNFKVLVLTSCDGFSTDGLAAIAAHCRHITELDLQESDIDDRGGNWLSCFPDSCTSLVSLNFACLTKEVNFEALERLVARCTSLRSLKLNRLVPLELLHRLLVRAPHLEDLGTGAYLHEPRTEQYSKLKAALQNCKGLQSLSGFWEVAPGYLPLVESLCSNLTSLNLSYATIQSAELTNLLGHCHKLQRLWVLDYIEDKGLEVVASTCKDLQELRVFPLDPYGQGAVTEEGLVNISRGCPKLTSVLYFCCQMTNAALITVARNSPLLTCFRLCIIDPTSPDHLTKQPLDEGFGTIVQSCKSLRRLSMAGLLTDKVFQVIGTYGKCLEMLSVAFAGDSDFGMQCVLSGCTNLRKFEVRDSPFGDLALLAGSEKYESMRSLWMSSCSVTVHGCKELAAKMRSLNVEVIHDRDQFEDISTMTHPVDGLYVYRSVAGHRKDTPHFIYTM*

Protein Length: 576

Fln nts: TTAATTTTTGTGGGCTTTGATGCAGGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCAGCCAGGGGGTCTGAAATCTAAGCGCTGTATGCATGAGGCATATTTGTTATTATTAGGATTGCAATTATTATT_-_ATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAACTGCTGGAGCACGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCAGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTTTCATCGGAAATTGCTACGCGGTGAGCCCCGCTATACTCGTCAGGAGGTTCCCAAGGATAAAGTCCGTTGCGCTCAAGGGGAAGCCCCATTTTGCGGACTTTAACATGGTGCCCCCTGGCTGGGGCGCTGATATCCATCCCTGGCTGGTCGCCATGGCGGAGGCGTACCCTTGGCTGGAAGAACTCAGGCTTAAGCGCATGGTGATCACTGACGAGAGCCTTCAGCTCCTCGCGCGTTCTTTTCCCAATTTCAAGGTTCTCGTGCTTACCAGTTGCGACGGCTTCAGCACGGATGGGCTCGCTGCCATTGCCGCGCACTGCAGGCATATTACAGAGCTAGATTTGCAGGAGAGTGACATTGATGATCGTGGTGGCAATTGGCTAAGTTGTTTTCCGGACTCGTGCACATCGCTTGTTTCCTTAAACTTTGCATGTCTGACTAAGGAGGTGAACTTTGAAGCACTTGAGAGATTAGTAGCAAGATGTACTTCTCTGAGGAGTTTGAAATTGAATCGTTTGGTGCCACTAGAGCTACTACATCGCCTTTTGGTTCGTGCCCCACATCTGGAGGATTTGGGTACAGGTGCATACCTTCACGAGCCACGCACTGAACAATATTCCAAGCTCAAGGCTGCCTTACAGAATTGCAAGGGACTTCAAAGCTTATCTGGTTTTTGGGAGGTTGCACCTGGTTATCTTCCCTTGGTTGAGTCCCTCTGTTCAAATTTGACCAGTCTGAACTTGAGTTATGCAACAATTCAAAGTGCAGAACTTACCAACCTCCTTGGTCACTGCCACAAACTACAACGCTTATGGGTATTGGATTATATTGAAGATAAAGGGCTTGAAGTGGTTGCCTCAACCTGCAAAGATTTGCAGGAACTGCGTGTTTTCCCGTTAGACCCTTATGGTCAAGGAGCCGTGACAGAGGAAGGCCTTGTGAATATTTCAAGGGGCTGTCCTAAGTTGACCTCTGTACTATATTTTTGTTGTCAAATGACAAATGCAGCTTTGATTACTGTTGCAAGAAATAGCCCTCTTCTCACCTGTTTCCGCTTATGTATTATTGATCCCACAAGCCCAGATCATTTGACAAAGCAACCCCTGGATGAAGGGTTTGGAACAATTGTTCAGTCTTGCAAAAGTTTACGGCGTTTATCTATGGCTGGCTTGCTTACAGACAAGGTCTTTCAGGTGATTGGTACTTATGGCAAGTGTTTGGAGATGCTTTCTGTTGCTTTTGCTGGTGATAGTGATTTTGGGATGCAATGTGTACTATCAGGCTGTACAAATCTCCGTAAGTTTGAGGTAAGGGACAGCCCATTCGGTGATTTAGCTCTTTTAGCAGGTTCAGAAAAGTATGAATCAATGCGATCCCTTTGGATGTCATCCTGCTCTGTTACCGTGCATGGTTGCAAGGAATTGGCTGCAAAAATGCGCAGCTTGAATGTTGAAGTTATCCATGACAGGGATCAGTTTGAAGATATAAGTACCATGACTCATCCCGTAGATGGACTCTATGTGTACCGGTCAGTTGCTGGACATCGGAAGGATACACCACATTTCATTTACACTATGTAA___GTGGTCATGTCATTTCTCACGTACCATGAATTAAGCTGGCATGTTCTTGCTAAAGCAGCAGAGTACCAAGCATGGATGGGATTTTCCTCTCATACACCATGGATTATGCCAGAAAATTCTTGTGATACTGACACTCTCACCTTCCATCGCAAAATTTGTATGCCTTGTACAGACAAATTTCAGCATTCAAATACTGTTTGGCATAGAGTTATTACTGTCATTTCAGCACTATGCGGCAGTATCCTCTAATCTAGGACTGTTCGATTGATCTTTGGACTCCCTTAATTATGCTACAGATTATTTAAATGCAGCAATTGAACAGCCTGGCAGACTTCTAGTCTGGAATTAGGCAGTAAATAGTTATTTAATTATATAGGCGTACAGTGTGATTTCGTTTCATTTTTTAGAGAACCCTTCCGGTTACCGCTATTTAAGACTGCCATGTTCAGAAAATCTTATTTGATTGAAGAGAAGACAACATTCTCTGCGCTATTTCTTTCTTCTTGTGTGTTGATCATCTGTTGCCCTACTTCTTAGACAAATGCCGTACATTCTTGTTTGTTCTTCTGTGCAGTGCATTGTGCACATTCCAGAGGTCTTCTATGCAATAATTGTTCACATCAGCACTGTATGGCTCAACAATGGGGACTGTTACTGAGACACATGCTTAGCATGCTGTAAACTTTTCAGGTGTCTGTAATTTTTTTCTCAGATG

Fln Alignment:

Contig1128___MSSFPDELLEHVLAFLSSHRDRNAVSLVCKSWFRIEAGSRQRVFIGNCYAVSPAILVRRFPRIKSVALKGKPHFADFNMVPPGWGADIHPWLVAMAEAYPWLEELRLKRMVITDESLQLLARSFPNFKVLVLTSCDGFSTDGLAAIAAHCRHITELDLQESDIDDRGGNWLSCFPDSCTSLVSLNFACLTKEVNFEALERLVARCTSLRSLKXXXXXXXXXXXXXXXRAPHLEDLGTGAYLHEPRTEQYSKLKAALQNCKGLQSLSGFWEVAPGYLPLVEXXXXXXXXXXXSYATIQSAELTNLLGHCHKLQRLWVLDYIEDKGLEVVASTCKDLQELRVFPLDPYGQGAVTEEGLVNISRGCPKLTSVLYFCCQMTNAALITVARNSPLLTCFRLCIIDPTSPDHLTKQPLDEGFGTIVQSCKSLRRLSMAGLLTDKVFQVIGTYGKCLEMLSVAFAGDSDFGMQCVLSGCTNLRKFEVRDSPFGDLALLAGSEKYESMRSLWMSSCSVTVHGCKELAAKMRSLNVEVIHDRDQFEDISTMTHPVDGLYVYRSVAGHRKDTPHFIYTM
C9EHS7______________MSSFPDELLEHVLAFLSSHRDRNAVSLVCKSWFRIEAGSRQRVFIGNCYAVSPAILIRRFPRIKSVALKGKPHFADFNMVPPGWGADIHPWLAAMAEAYPWLEELRLKRMVITDESLQLLARSFPNFKVLVLTSCDGFSTDGLAAIAAHCRHITELDLQESDIDDRGGNWLSCFPDSCTSLVSLNFACLTKEVNFEALERLVARCTSLRSLKLNRLVPLELLHRLLVRAPHLEDLGTGAFLHEPRTEQYSKLKVALQNCKRLQSLSGFWEVAPGYLPLVESLCSNLTSLNLSYATIQSAELTNLLGHCHKLQRLWVLDYIEDKGLEVVASTCKDLQELRVFPLDPYGQGAVTEEGLVTISRGCPKLTSVLYFCCQMTNAALITVARNSPLLTCFRLCIIDPTSPDHLTKQPLDEGFGTVVQSCKSLRRLSMSGLLTDKVFQVIGTYGKCLEMLSVAFAGDSDFGMQCVLSGCINLRKLEVRDSPFGDLALLAGSEKYESMRSLWMSSCSVTVHGCKELAAKMRNLNVEVIHDRDQFEDISTMTQPVDGLYVYRSVAGHRKDTPHFIYTM

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2068			50	50	1.0
2147	14		85		0.993533
2188		85		14	0.993533
2436	90	10			0.90298
2474	16		83		0.994512
2476	16	83			0.994512
2478		83		16	0.994512
2491		20	80		0.995493
2493	20			80	0.995493
2512		33	66		0.997452
2514		33		66	0.997452
2515		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain