SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1105

Length: 1603 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1105 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	rna-binding protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	0.0	70%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Splicing factor PWI	IPR002483	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACT8

Fln msg: your sequence is longer than subject: 327 - 222

Fln protein: MIDHKRSPMDQGYGSDSGEEFQQAEASLGNGNASVSGDEAAMEQMPDTDSRQNIGAPARKLGFGLIGSGKRAAVPSVFHQEDDEDTHKEKKMRPLVPIDYSAEEMQAVSATPPPVTVSSLSAAAEFGKRILAAGSKERVDPEKERSRKQSPEKDRGRKQSDRSGQKERENNDNDSNRSREENKARNRESDRSREKYHDRDDAVEKSKALENKKLLDAKQLIDTIPKTKEALFAYNIDWAIYDKYDLHERMRPWISKKITEFLGEEETTLVDFVVSKTKKHVAAAHMLELLESILDEEAEMFVLKMWRMLIFEIKKVETGLASKAKT*

Protein Length: 328

Fln nts: AGAGAAAAGAAAAAGAAGGCAAAGGGAGAAGGAAGACGACCTATCTGATCAACTAAGAGAAGAACAAGAGATTGCACAGGCAAAGAAGCGAAAATTTGAAGATAATAGACAAGAGGAGGATTCAAAAGCATTGTTACTGTCTGATCGACATGAATCTGCAAGCTTGCCTGTAGATGAAATT_-_ATGATTGATCACAAAAGGAGTCCAATGGACCAAGGTTATGGGAGTGATTCTGGCGAAGAATTTCAACAGGCTGAAGCATCATTGGGGAATGGAAATGCCAGTGTATCAGGAGATGAAGCTGCAATGGAGCAGATGCCTGACACAGACTCCAGGCAAAACATTGGTGCACCTGCTCGAAAGTTAGGTTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCACCAGGAGGATGATGAAGACACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCAATTGACTACTCTGCAGAGGAAATGCAGGCAGTCTCAGCGACTCCTCCCCCTGTAACAGTCTCAAGTCTTTCTGCAGCAGCAGAGTTTGGAAAGCGTATATTGGCTGCTGGTTCTAAAGAACGAGTTGATCCAGAAAAGGAGAGAAGCAGAAAACAAAGTCCTGAAAAGGACAGAGGTAGAAAGCAAAGTGATAGATCAGGCCAGAAAGAAAGAGAAAATAATGACAACGATAGCAATCGCAGCAGAGAAGAAAACAAGGCTAGAAATCGAGAGAGTGATAGGAGTCGTGAGAAATATCACGATAGAGATGATGCTGTGGAGAAATCAAAGGCACTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATTGATACCATTCCCAAGACAAAAGAGGCTCTATTTGCTTACAACATTGACTGGGCCATATATGACAAGTATGATCTGCATGAGAGAATGCGACCATGGATCTCAAAGAAAATAACCGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTAGTCTCCAAAACCAAGAAGCATGTGGCTGCAGCCCATATGTTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTTGTCCTAAAGATGTGGAGGATGCTGATTTTTGAAATCAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGACCTGA___CGGATTTCAGTTAGTTTTCTATTGAATTCCTCATGATTTGGCCGTTAATCTTATAGCAGACATTGAGGTATAGATGCTGTCAATTCCACAGTTCCCTTGGTATTTACTATTTTCTGAGGCTACTTGAGGGCTTTTGCTGACAATATTTTACTTAAATGCTTCATATGTTTGTAACCAAGCTGGTAGCATTAGGCATTATGCCTAAAGTTATTCGACTCCAATCTTTCCCCTTAATGTGGAGTGAAAAGGGCAATGTAAAGCAAGTGTATACTTCATTTTCCATTCTTTTTTAGTAAACAGGATATTAACCATAAATAACGGGAAGTCTTGAATATTCAGAGATGGTGCTTCGAGATCAGATTGCTGCTTACTCCATTGTGTCTGTGCATTCTCTATGCTGCTGTGTTGGGTTTTGGTAAGGTTTTGTTGTCTACTATAAAA

Fln Alignment:

Contig1105___MQAVSATPPPVTVSSLSAAAEFGKRILAAGSKERVDPEKERSRKQSPEKDRGRKQSDRSGQKXXXXXXXXXXXXXXXNKARNRESDRSREKYHDRDDAVEKSKALENKKLLDAKQLIDTIPKTKEALFAYNIDWAIYDKYDLHERMRPWISKKITEFLGEEETTLVDFVVSKTKKHVAAAHMLELLESILDEEAEMFVLKMWRMLIFEIKKVETGLASKAKT
D5ACT8______________MQAVSATPPSGTVSHFAAAAEFGKRISSAGSKERVDPEKDKSRKQTPEKDRSRKHSDRSGQKERESNDNDNNRSREESKTRSRERDRSREKYHERDDAVEKSKALENKKLLDAKQLIDTIPKTKEALFAYNIDWAIYDKHDLHERMRPWISKKITEFLGEEETTLVDFVVSKTKKHVAAAHMLELLESILDEEAEMFVLKMWRMLIFEIKKVETGLASKAKT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
820		75		25	0.996473
1032	75		25		0.996473
1082	80		20		0.995493
1199		14		85	0.993533
1200		14	85		0.993533
1201		14	85		0.993533
1203	85			14	0.993533
1264		12		87	0.992554
1478		11		88	0.923564
1524	28		71		1.0
1528		40	60		1.0
1532	80		20		0.995493
1534			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain