SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1074

Length: 1160 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1074 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=8 Tax=Embryophyta RepID=Q9LPC7_ARATH	-	-	88%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	peptidyl-prolyl cis-trans isomerase-like 3	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	93%
Blast2go	protein peptidyl-prolyl isomerization	GO:0000413	Biological Process	93%
Blast2go	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
300	17	82			1.0
384	81	18			1.0
459	25	8	66		1.0
488	90	10			0.90298
490		90	10		0.90298
745		90	10		0.90298
748		90	10		0.90298
750		11		88	0.923564
751	11			88	0.923564
753	88	11			0.923564
755	11			88	0.923564
756			11	88	0.923564
757			11	88	0.923564
760	11			88	0.923564
761		11		88	0.923564
762		88	11		0.923564
763	11	88			0.923564
765		87	12		0.992554
782	10			90	0.90298
783	10	90			0.90298
785			10	90	0.90298
786		90		10	0.90298
796		10		90	0.90298
799	10		90		0.90298
800	90		10		0.90298
802		90	10		0.90298
803	10			90	0.90298
805	10	90			0.90298
806	90		10		0.90298
809	10			90	0.90298
810	10			90	0.90298
812	87		12		0.992554
817		12		87	0.992554
818	87		12		0.992554
820	87	12			0.992554
821	75		12		0.975346
963	83			16	0.994512
964			16	83	0.994512
965		16		83	0.994512
1023		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain