SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1067

Length: 1252 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1067

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ARO1-like protein 1 n=1 Tax=Vitis vinifera RepID=A5AQH2_VITVI	-	-	62%
FL-Next	tr=ARO1-like protein 1; Vitis vinifera (Grape).	-	-	66%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube growth	GO:0009860	Biological Process	79%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	79%
Blast2go	binding	GO:0005488	Molecular Function	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%
Blast2go	pollen tube tip	GO:0090404	Biological Process	79%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A5AQH2

Fln msg: Distance to subject end: 353 aas, your sequence is shorter than subject: 307 - 659

Fln protein: MAERVKQMLASPIQLADEVSKTAEEAHSFKQECMEVKRQTDKLAALLRQAARASGGLYERPTGRITEEINQVLGKALVLVTKCRRNAVLKRVFTITSAAAFRKMNFLLDSSIGDVTWLLNVSASGEDRADHLGLPPIATNDPMLGLIWEQIARLHTGSSPEEKADAAASLVSLAQDNERNGKLIVEEGGIGPLLKLIKEGTVEGQEAAAKAIGKLGKDPERVRQIIQEGVCSVFAKVLKDGGPMKVQSMVAWALSELVSHDPESQEHFAQSGIIRSLVGHLAFETVPDHSKYTVGAKAMSMQSVVNL

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATCTACAAAGATCCCGGGGTCGAACCCCTTCCTTAACCAAACAAAAAAGGGACGAGGGTTTTCATAAGTCTTTCGGTTGCGCTTACACTCCTGTCCGGGGTGAACCTGCAGGAGGCGTCGAAGAGCAGATCAGTATGTATGACTGAAGCAACGGGTGGCGTTGTGAAGGAACGAATTGGAAACCCCTTTTTTTTAATTCGAATCAAGGGCTGAAGAATTCAGAGCTGAAAGTGGTTCGTTGGGTGCGGGATTGATCCGAAAGAAATTAAGGTGAGTGGATTTGAATGAAGTGATAATTAATAGA_-_ATGGCGGAGAGAGTAAAGCAGATGCTGGCATCGCCCATCCAGTTGGCGGATGAGGTATCGAAAACGGCGGAAGAAGCTCATTCTTTCAAGCAGGAATGCATGGAGGTGAAGAGACAGACGGACAAATTAGCTGCTCTGCTGCGACAAGCGGCACGGGCGTCGGGGGGCCTGTATGAGAGGCCAACAGGTCGAATTACAGAAGAAATAAATCAAGTTCTGGGAAAAGCTCTGGTTTTGGTGACGAAATGCAGGCGCAATGCGGTTCTGAAGAGGGTTTTCACCATAACATCGGCGGCAGCATTCAGAAAAATGAATTTCTTACTGGACAGCTCGATCGGGGACGTGACGTGGCTTCTGAATGTGTCTGCGAGCGGGGAAGATCGAGCAGATCATTTGGGTTTGCCTCCCATAGCGACAAATGATCCGATGCTTGGCCTGATCTGGGAACAGATAGCACGGTTGCACACAGGGAGCAGTCCCGAGGAGAAAGCGGACGCGGCAGCCTCATTGGTTTCTCTGGCCCAGGACAACGAGCGAAATGGGAAATTGATTGTCGAAGAAGGCGGAATCGGCCCCTTGCTCAAGCTTATCAAGGAAGGCACCGTTGAAGGCCAGGAAGCCGCGGCAAAAGCCATCGGGAAACTTGGTAAGGATCCTGAACGCGTTAGGCAGATAATTCAGGAGGGTGTGTGCTCTGTTTTTGCGAAGGTCTTGAAGGACGGTGGTCCAATGAAGGTCCAGAGTATGGTCGCCTGGGCTTTGTCTGAGTTGGTCTCCCATGATCCCGAATCGCAGGAGCATTTTGCCCAGAGTGGAATTATCAGGTCACTTGTTGGTCATTTGGCCTTTGAGACAGTTCCTGATCATAGCAAGTATACTGTCGGTGCCAAGGCCATGAGCATGCAATCTGTTGTCAATCTCGC

Fln Alignment:

Contig1067___MAERVKQMLASPIQLADEVSKTAEEAHSFKQECMEVKRQTDKXXXXXXXXXXXSGGLYERPTGRITEEINQVLGKALVLVTKCRRNAVLKRVFTITSAAAFRKMNFLLDSSIGDVTWLLNVSASGEDRAD-HLGLPPIATNDPMLGLIWEQIARLHTGSSPEEKADAAASLVSLAQDNERNGKLIVEEGGIGPLLKLIKEGTVEGQEAAAKAIGKLGKDPERVRQIIQEGVCSVFAKVLKDGGPMKVQSMVAWALSELVSHDPESQEHFAQSGIIRSLVGHLAFETVPDHSKYTVGAK-AMSMQSVV
A5AQH2______________MADIVKQILTRPIQLAEQVSKAAEGANSFKQDCLELKSKTDKLAVLLRQAARASS--YERPMRRIIEDTEQVLDKALALVIKCRANGLMKRVFTIIPAAAFRKTSLQLENSIGDVSWLLRVSASADDRDDEYLGLPPIAANEPILCLIWEQIAILHTGSL-EDRSDAAVSLVSLARDNDRYGKLIIEEGGVPPLLKLAKEGKMEGQESAAKALGLLGRDPESVEHIVNAGVCSVFAKILKE-GRMKVQAVVAWAVSELAAHHPKCQDHFAQNNIIRLLVSHLAFETVQEHSKYAIASKQTMSIHSVV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997452
94		25		75	0.996473
134		83		16	0.994512
191	83		16		0.994512
229	85	14			0.993533
378		85		14	0.993533
400			66	33	1.0
565		25		75	0.996473
630			75	25	0.996473
746	25		75		0.996473
748		75		25	0.996473
749	75		25		0.996473
750	75			25	0.996473
786			80	20	0.995493
787		80	20		0.995493
788	80		20		0.995493
789		80	20		0.995493
994	14		85		0.993533
996	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain