SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1065

Length: 967 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1065

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_156.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7TNX1_VITVI	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	hit-type zinc finger family protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, HIT-type	IPR007529	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A5AJP4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 164 aas, your sequence is shorter than subject: 224 - 385

Fln protein: MEDPQENGMEDGRTAANRPNCEECGKNPWKYKCPGCGLRSCGLPCVKAHKDRTQCTGKRNRAQFVPISQFDDNWLVSDYNFLEEALRMNEAAKRSRAPLGDLRRFPSRPRKAFQNQARNRSTKLLFLPKGMSKNETNRSYYNKWRKCIYWTVEWQFHSTDVIFVDHGVDEHVSLQSILEKHLTIGPGNPVSRHKLRHFCKESTENLKLFIKIECTKGAKKIIL*

Protein Length: 225

Fln nts: ATGGGGATACACATTCATTCTTTAGCCCATTCATATCCACTGCATGAGTATTCATATACACTGCCCTGAGTATTCATAGCAGCAGTATTAGTCCGGTGCCGAACAGAAGATGAGCCTACACCGTGGCCTGTCAAATTTGCCTACCATACCATTCCAAGTTCCAACATTCTACTGACCTAAAACGTCCATATATGAACATTCTTTAAGCATACTTATCACGACTAGCCTGAAAATTCATAGCAGCAATATTAGTCCAGCGGCGAACAGAAGGAAACGAA_-_ATGGAAGATCCTCAAGAAAACGGAATGGAAGACGGCCGAACAGCAGCAAACCGGCCAAATTGTGAGGAATGCGGAAAAAATCCCTGGAAATACAAGTGCCCGGGATGTGGCTTGCGGTCATGTGGACTGCCCTGCGTGAAAGCTCACAAAGATCGCACTCAATGCACAGGCAAGCGAAACCGAGCTCAGTTTGTGCCCATATCCCAGTTCGATGACAATTGGCTCGTATCAGATTACAACTTCTTGGAGGAAGCTTTGAGGATGAACGAAGCTGCCAAGCGGAGCCGAGCTCCTTTAGGTGACCTCAGGCGTTTTCCGAGCAGACCCAGGAAAGCTTTTCAAAACCAGGCCAGAAATCGCAGTACAAAACTTTTATTTCTTCCGAAGGGGATGTCCAAGAACGAAACCAATAGGTCTTATTACAATAAATGGCGGAAATGCATTTACTGGACAGTTGAGTGGCAGTTTCATTCAACAGATGTGATCTTTGTTGACCATGGGGTTGATGAACATGTGAGCCTGCAGAGTATATTGGAAAAACATCTGACAATTGGTCCTGGAAATCCCGTGTCACGTCATAAATTAAGGCATTTTTGTAAAGAATCTACCGAAAATCTGAAGCTTTTCATCAAGATAGAATGTACAAAGGGTGCCAAAAAAATTATATTATGAATTGAATATTACACATT

Fln Alignment:

Contig1065___PNCEECGKNPWKYKCPGCGLRSCGLPCVKAHKDRTQCTGKRNRAQFVPISQFDDNWLVSDYNFLEEALRMNEAAKRSRAPLGDLR--RFPSRPRKAFQNQARNRSTKLLFLPKGMSKNETNRSYYNKWRKCIYWTVEWQFHSTDVIFVDHGVDEHVSLQSILEKHLTIGPGNPVSRHKLRHFCKESTENLKLFIK
A5AJP4______________PLCQECKLNPSKYTCPGCSVRSCSLPCVKAHKQQTGCTGKRQQTQFVPLSQFDDNLLLSDYNLLEEVKSVAESAQRRRVKLCGYSQLKFPYHLR-GLRNAAGSRRTKLLFLPSGMSKREKNKSQYNQRSKCITWTIEWRFHSTDVVLLDHGINENSTLSSVIEKHLKPGPWN----HKLKPFCAEQLDCLKFFIR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
614		20		80	0.999996
620	90			10	0.90298
621	90			10	0.90298
650	20			80	0.995493
651		20		80	0.995493
688	83			16	0.994512
733			12	87	0.992554
734			12	87	0.992554
802	71		28		1.0
821	14			85	0.993533
824			85	14	0.993533
845		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain