SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1062

Length: 1981 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1062
CGTCGTGACCTTGGCTGTCACTCAGTTTTTGCCATGTGGTGAAAGCATCAAAAGCTCTTCGTCGTGACCTTGGCTGTCACTCAGTATTCTGCCCGAAGACCGAATGCCTAGCTAAATTTAGTGAAAATCTCATAAAATTTGGCGAAAGTTTCAGTCTGCCTAACGCAAACTATGGCTTTTAGGTTGCTGCCGGCCTTTAGAAGGAGCATCGGTGTTTTCTCGTCGAATTACCAAAGTAGTAAGCTTGGTGGCTTTTCAATGCACTCAAGGAAGAGTCCTGGAAAGGGCAATGCATCTTTTTTTGCATTGGCAGCAGCTGCAGCTGCAGGATATTTATGGTTAGAAAGATACGATGAGACGTCAATTATGCTGTCCCCACAGCTTCATCATTTGTTAATGCATTTTTCGCAAGAAGGACTACAGTCTAACTATCAATCTGCAATACAAACGGATGTCTCTGGATCAGTGAATTGCTTCAGAGCTTCCAACACTGATGCATGTAATACAAGTTCATTGTCTTCAAATCCTTTTCAAACTGAGTCTCAGAACAATGTGGGTGCAAGTCCAAAAAGTGATTCAACCTGTTTAACAAGGCATTCTATTGCTGATGCAGCTGCTAAGGTAGCTCCTGCTGTAGTTAATTTGACTGTGACACAAGGTCTTCGGGGCATGTTTTTAGGCCGGTCTATTGGTTCGGGGACAATTATAGATTCAAATGGCACAATTTTAACAAATGCGCATGTAGTAGCAGAGTTTACAAGTGCAGGAGTGCCTTACAAAGGAAAGGTTGTTGTTACGTTGCAAGATGGGAGGACTTTTGATGGAGAAGTTATCAATGCTGATTTTCATACTGATATTGCTGTTGTTAGAATCAACGCAAAGGTTCCATTGCCAGCAGCAAAACTGGGTTCTTCTAGCAAACTTCGACCAGGGGATTGGGTAATAGCTTTGGGGTGCCCTCTATCTCTCCAAAATACAGTTACTGCTGGAATTGTGAGCTATGTAGATCGCAAAAGCAGTGATTTGGGTCTTGGCGGAATGCGCAGAGAATATTACTATTTACAAACGGATTGTGCAATCAATGAGGGAAGCTCTGGTGGACCGTTAGTCAATCTTGATGGAGAAGTAATAGGTATTAACACAATGAAGGCTCTTGCCGCTGATGGAGTTAGCTTTGCTATCCCCATAGACTCTGTCATCAAGACCGTTGAGCATTTCAAGAAACATGGAAGAGTTGTGCGTCCGTGGCTGGGACTTAAGATGCTTGAACTGAACGAACTTATTATAGCTCAGCTTAAAGAGAGAGACCCAGCTTTTCCTGATGTAACAGAGGGTGTTCTTGTGCCACAGGTGACTCCTGGTTCACCTGCTTATCGAGCTGGATTCCGTCCTGGAGATGTTGTAGTTCAGTTTGACGGGAAACCAACTAAAAGCATCAAGGAGATTGTTGAGATAATGGGTGACAAAGTTGGAGTGGCTTTCAAAGTAATTGTGAAGCGATCAAATAATATACAATTGACCTTGACAATAGTGCCAGAGGAAGCCAGCCCAAATCTATTTTGAGTACGGAGGGTAACATGCATTTTCTTTGCATTAATTGGACTGGGTTTTTGTGAAGCAATTCATCATCTATTGAAGGTAGCAGTGAGAGGGTAATATGCATTTTCTTTGCATTAATTGGACTGGGTTTTTGTGAAGCAATTCATCATCTATTGAAGGTAACAGTGAGAAGGTCAGCTGGTTTGCGTCAACTACCTTCACAGATGTGTGATTGAGAGCTCCAAAATGAACCCATTTTTCTTTTGAATGCTGAATTTAAGAGATCTACCAATCCCAAGGCACGTGAATGGAAGCTGCCTCTTGGGCTTTGGATGCAGTAATAATGCTACAGTTAAAAGATTCGGACTTCACTAAGCATTTCTTGATCTTTTGTACAGAGGAAGTTTAACTTCTCTATTGAACAGTTTTAATTATATCCATT

Ace file of the UniGene sp_v2.0_unigene1062

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine protease htra2, putative n=1 Tax=Ricinus communis RepID=B9RF97_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protease do-like 14-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	77%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	77%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVJ7

Fln msg:

Fln protein: MAFRLLPAFRRSIGVFSSNYQSSKLGGFSMHSRKSPGKGNASFFALAAAAAAGYLWLERYDETSIMLSPQLHHLLMHFSQEGLQSNYQSAIQTDVSGSVNCFRASNTDACNTSSLSSNPFQTESQNNVGASPKSDSTCLTRHSIADAAAKVAPAVVNLTVTQGLRGMFLGRSIGSGTIIDSNGTILTNAHVVAEFTSAGVPYKGKVVVTLQDGRTFDGEVINADFHTDIAVVRINAKVPLPAAKLGSSSKLRPGDWVIALGCPLSLQNTVTAGIVSYVDRKSSDLGLGGMRREYYYLQTDCAINEGSSGGPLVNLDGEVIGINTMKALAADGVSFAIPIDSVIKTVEHFKKHGRVVRPWLGLKMLELNELIIAQLKERDPAFPDVTEGVLVPQVTPGSPAYRAGFRPGDVVVQFDGKPTKSIKEIVEIMGDKVGVAFKVIVKRSNNIQLTLTIVPEEASPNLF*

Protein Length: 465

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTGCCATGTGGTGAAAGCATCAAAAGCTCTTCGTCGTGACCTTGGCTGTCACTCAGTATTCTGCCCGAAGACCGAATGCCTAGCTAAATTTAGTGAAAATCTCATAAAATTTGGCGAAAGTTTCAGTCTGCCTAACGCAAACT_-_ATGGCTTTTAGGTTGCTGCCGGCCTTTAGAAGGAGCATCGGTGTTTTCTCGTCGAATTACCAAAGTAGTAAGCTTGGTGGCTTTTCAATGCACTCAAGGAAGAGTCCTGGAAAGGGCAATGCATCTTTTTTTGCATTGGCAGCAGCTGCAGCTGCAGGATATTTATGGTTAGAAAGATACGATGAGACGTCAATTATGCTGTCCCCACAGCTTCATCATTTGTTAATGCATTTTTCGCAAGAAGGACTACAGTCTAACTATCAATCTGCAATACAAACGGATGTCTCTGGATCAGTGAATTGCTTCAGAGCTTCCAACACTGATGCATGTAATACAAGTTCATTGTCTTCAAATCCTTTTCAAACTGAGTCTCAGAACAATGTGGGTGCAAGTCCAAAAAGTGATTCAACCTGTTTAACAAGGCATTCTATTGCTGATGCAGCTGCTAAGGTAGCTCCTGCTGTAGTTAATTTGACTGTGACACAAGGTCTTCGGGGCATGTTTTTAGGCCGGTCTATTGGTTCGGGGACAATTATAGATTCAAATGGCACAATTTTAACAAATGCGCATGTAGTAGCAGAGTTTACAAGTGCAGGAGTGCCTTACAAAGGAAAGGTTGTTGTTACGTTGCAAGATGGGAGGACTTTTGATGGAGAAGTTATCAATGCTGATTTTCATACTGATATTGCTGTTGTTAGAATCAACGCAAAGGTTCCATTGCCAGCAGCAAAACTGGGTTCTTCTAGCAAACTTCGACCAGGGGATTGGGTAATAGCTTTGGGGTGCCCTCTATCTCTCCAAAATACAGTTACTGCTGGAATTGTGAGCTATGTAGATCGCAAAAGCAGTGATTTGGGTCTTGGCGGAATGCGCAGAGAATATTACTATTTACAAACGGATTGTGCAATCAATGAGGGAAGCTCTGGTGGACCGTTAGTCAATCTTGATGGAGAAGTAATAGGTATTAACACAATGAAGGCTCTTGCCGCTGATGGAGTTAGCTTTGCTATCCCCATAGACTCTGTCATCAAGACCGTTGAGCATTTCAAGAAACATGGAAGAGTTGTGCGTCCGTGGCTGGGACTTAAGATGCTTGAACTGAACGAACTTATTATAGCTCAGCTTAAAGAGAGAGACCCAGCTTTTCCTGATGTAACAGAGGGTGTTCTTGTGCCACAGGTGACTCCTGGTTCACCTGCTTATCGAGCTGGATTCCGTCCTGGAGATGTTGTAGTTCAGTTTGACGGGAAACCAACTAAAAGCATCAAGGAGATTGTTGAGATAATGGGTGACAAAGTTGGAGTGGCTTTCAAAGTAATTGTGAAGCGATCAAATAATATACAATTGACCTTGACAATAGTGCCAGAGGAAGCCAGCCCAAATCTATTTTGA___GTACGGAGGGTAACATGCATTTTCTTTGCATTAATTGGACTGGGTTTTTGTGAAGCAATTCATCATCTATTGAAGGTAGCAGTGAGAGGGTAATATGCATTTTCTTTGCATTAATTGGACTGGGTTTTTGTGAAGCAATTCATCATCTATTGAAGGTAACAGTGAGAAGGTCAGCTGGTTTGCGTCAACTACCTTCACAGATGTGTGATTGAGAGCTCCAAAATGAACCCATTTTTCTTTTGAATGCTGAATTTAAGAGATCTACCAATCCCAAGGCACGTGAATGGAAGCTGCCTCTTGGGCTTTGGATGCAGTAATAATGCTACAGTTAAAAGATTCGGACTTCACTAAGCATTTCTTGATCTTTTGTACAGAGGAAGTTTAACTTCTCTATTGAACAGTTTTAATTATATCCATT

Fln Alignment:

Contig1062___MAFRLLPAFRRSIGVFSSNYQSSKLGGFSMHSRKSPGKGNXXXXXXXXXXXXGYLWLERYDETSIMLSPQLHHLLMHFSQEGLQSNYQSAIQTDVSGSVNCFRASNTDACNTSSLSSNPFQTESQNNVGASPKSDSTCLTRHSIXXXXXXXXXXXXNLTVTQGLRGMFLGRSIGSGTIIDSNGTILTNAHVVAEFTSAGVPYKGKVVVTLQDGRTFDGEVINADFHTDIAVVRINAKVPLPAAKLGSSSKLRPGDWVIALGCPLSLQNTVTAGIVSYVDRKSSDLGLGGMRREYYYLQTDCAINEGSSGGPLVNLDGEVIGINTMKALAADGVSFAIPIDSVIKTVEHFKKHGRVVRPWLGLKMLELNELIIAQLKERDPAFPDVTEGVLVPQVTPGSPAYRAGFRPGDVVVQFDGKPTKSIKEIVEIMGDKVGVAFKVIVKRSNNIQLTLTIVPEEASPNLF
A9NVJ7______________MASRLLPAFRRSIGVFSSNYQGNKLGGFPKYSRKSLRKGSASFFALAAAAAAGFLWLERYDETSITLSPQLHHLLMHFWQQGLDCNYQSAMQTDVSGSVNCFRTSNTDASDTSSLSSNHFQTESQNSVGASPKSDSTCLTRHSIADAAAKVAPAVVNLTVTQGLRGMFLGRSIGSGTIIDSNGTILTNAHVVAEFTSAGVPYKGKVVVTLQDGRTFDGEVINADFHTDIAVVRINTKVPLPAAKLGSSSKLRPGDWVIALGCPLSLQNTVTAGIVSYVDRKSSDLGLGGIRREYYYLQTDCAINEGSSGGPLVNLDGEVIGINTMKALAADGVSFAIPIDSVIKTVEHFKKHGRVVRPWLGLKMLELNELIIAQLKERDPSFPDVTEGVLVPQVTPGSPAHRSGFRPGDVVVQFDGKPTKSIKEIVEIMGDKVGVAFKVIVKRSNNVQETLTIVPEEASPNLF

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
1236	83	16			0.994512
1239		16		83	0.994512
1244		16	83		0.994512
1246		83		16	0.994512
1247		83	16		0.994512
1251			83	16	0.994512
1253		16		83	0.994512
1254			83	16	0.994512
1255		16	83		0.994512
1256	16		83		0.994512
1358		87		12	0.992554
1360		87	12		0.992554
1361		87	12		0.992554
1362			12	87	0.992554
1445	90		10		0.90298
1446		10	90		0.90298
1447	90			10	0.90298
1448			10	90	0.90298
1449	10			90	0.90298
1457			11	88	0.923564
1458	88	11			0.923564
1486	87		12		0.992554
1487	87			12	0.992554
1488	87	12			0.992554
1492	87	12			0.992554
1498	87	12			0.992554
1499	87			12	0.992554
1501		87		12	0.992554
1502		12	87		0.992554
1506	87			12	0.992554
1507	87	12			0.992554
1530	87	12			0.992554
1531	87		12		0.992554
1533	87	12			0.992554
1537	12	87			0.992554
1539	87	12			0.992554
1540			87	12	0.992554
1541	87			12	0.992554
1544	85	14			0.993533
1545	85			14	0.993533
1547		85		14	0.993533
1552		83		16	0.994512
1624	88	11			0.923564
1625			11	88	0.923564
1628	88		11		0.923564
1630		88	11		0.923564
1632		11		88	0.923564
1637			11	88	0.923564
1639	88	11			0.923564
1640	88			11	0.923564
1641			88	11	0.923564
1642			88	11	0.923564
1643		11		88	0.923564
1645			88	11	0.923564
1667		10		90	0.90298
1668			10	90	0.90298
1671			10	70	0.999998
1673			10	90	0.90298
1674	10		90		0.90298
1676	90	10			0.90298
1679	90		10		0.90298
1680	90		10		0.90298
1681		10		90	0.90298
1684		10	90		0.90298
1688	10		90		0.90298
1838	14	85			0.993533
1841	85			14	0.993533
1842			85	14	0.993533
1876	83			16	0.994512
1889	20		80		0.995493
1893	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain