SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1049

Length: 2782 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1049
ATTTCATTTACGCTATCCACTGCAACACCCCGCTACCGTGTCCTGTAGAAATAAAATAAAAATATACTCAATTGGAATGGGGACTTCGAACTGAGTGAGTGGTGCACGGCCATGGCACTCTCCGCCTCGGCCACGGCCTCATATACCAGGGGAAGAAGATTAGCCTTCAAAGAAACTTCATGCCTATCATCATTTAAAGGATCAGGATTTCTTTTTAACAAATGCTGGTTCCCACAGACGCGCTTTCCTCGGCGACTCGGGTTTGCTCGTTGTAATACAAGCAATGGAACAGCTCTTTCTGCCCCCGACTTTGAGAAAAACGAGTATGGGCGCCAATATTTTCCTCTCGCCGCAGTTGTGGGACAGGATGCCATCAAGACAGCATTACTACTTGGAGCTGTTGATAATGCCATTGGTGGCATTGCCATTTCAGGGAAAAGAGGGACTGCCAAGACAGTAATGGCACGTGGATTGCATGCTATAATTCCACCTATTGAAGTTGTTGCGGGGTCTATTGCCAACTCTGACCCATTGTGTCCCGAAGAATGGGAAGAAGGACTAGAGAACCGACTAAAGTATAATGCTAATGGTACATTGAAAACAGATATAATAAAATCTCCATTTGTGCAGATACCACTTGGTGTAACAGAGGATAGGCTTTTAGGTTCAGTGGATGTAGAGGAGTCAGTCAAATCTGGAACAACGGTATTCCAGCCAGGTCTTCTTGCTGATGCTCACAGAGGAGTCCTATATGTTGATGAGATAAATCTTCTTGATGAAGGTATAAGCAATTTGCTTCTAAATGTTCTCACAGAAGGAGTTAATGTTGTGGAAAGAGAAGGAATCAGTTTTCGACATCCCTGCAAGCCACTTCTAATTGCTACGTACAATCCCGAGGAAGGTTCTGTACGAGAACATTTACTTGATCGCATTGCAATCAACCTCAGTGCTGATGTTCCCATGGAATTTGATGACCGTGTATCAGCAGTTGATCTTGCAATCCAATTCCAGGAAAAGTCCAAGCAAGTATTTCGGTCAGTTGAAGAAGGAACTGATTCAGCAAAGACACAGATCATTTTTGCAAGGGAATACCTAAAGGAAGTGAGCATTAGTAGGGATCAAATAAAGTATCTTGTTATGGAAGCCTTACGTGGTGGTTGTCAGGGTCACAGAGCTGAACTGTATGCTTCTAAAGTTGCAAGATCATTGGCCGCTCTTGAGGGTCGTGATAAAGTTGGGGTTGATGATCTCAAGAAAGCAGTAGAGCTGGTGATAATACCTCGTTCCACAGTTAATGAAAATCCACCGGAAAAACAGAACCAGCCTCCTCCACCGCCACCACCACCACCACAAAATCAGGATCCTGCAGAAGAACAAAACGAAGAAGATAAAGATGAGGAGGATGATGGTGATAATGAACAGCAAGAAGAAGAGCAAATACCAGATGAGTTTATCTTTGATGCAGAAGGTGGTTTGGTGGACTCAAAGCTGCTCTTCTTTGCACAACAGGCACAGAGGCGAAAGGGCAAAGCTGGTCGTGCCAAAAATGTAATATTTTCCGAGGATAGAGGACGATACATCAAGCCCATGCTTCCAAAGGGACCCATACGGAGGCTAGCCATTGATGCAACCCTAAGAGCAGCAGCACCCTATCAAAAATTGCGAAGACAGAGAGCTTTTGAAAAGGGAGAAAACAGACGGGTTTTTGTGGAGAAGACTGATATGAGAGCCAAGCGAATGGCCCGCAAAGCGGGAGCTCTGGTGATATTTGTTGTTGATGCCAGTGGAAGTATGGCACTGAATCGCATGCAAAATGCAAAAGGTGCTGCCATGCAACTTCTTTCTGAGAGCTATACAAGCAGAGATCAGGTATCAATTATTCCATTTCGTGGAGATGCAGCAGATGTCCTCCTACCACCATCTCGATCAATTGCAATGGCAAGAAAACGACTAGAGAGGCTACCTTGTGGTGGTGGCTCTCCCTTGGCTCATGGTCTTAGTATGGCTGTTCGAGTAGGATTAAATGCTGAGAAGAGTGGAGATGTTGGACGTGTGATGATAGTGGCTATCACAGATGGAAGGGCTAACATATCATTGAAAAGATCTACTGATCCAGATTCTAGTGCTACCGATTCACCAAAACCTTCCACACAAGAGTTGAAGGACGAGATATTAGAAATAGCAGGAAAGATTTACAAGGCAGGAATGTCCCTTCTTGTGATCGACACAGAGAATAAGTTTGTATCCACAGGGTTTGCAAAGGAGATTGCTAGAGTTGCTCAGGGGAAGTATTACTATTTACCTAATGCTTCCGATGCAGTTATATCCTCTGCAACAAAGGAGGCATTGGCTGCCTTCAAGAGTAGTTGATGTCAACTTGGAAAGCAGTGGACATCTCAAATTTTGACCTCCAATTCCTCATTTCTAGCTAATGAGGATCACTTCGTTTCTGATGCTGGTACTTTAGAGGATTCAGTGGTTGGATTCAGGCAAGTCTTATGGGTGCAGTAATACTACTTTAGGTTTCTCATTCCTTTGTGTGCGTTAGTGAACAAATGTCTACCTTGTATTCAAGTATTCATATCCATCTTAATATTTTGCAGAGGAACATTTTTATGGTGTATTAAATGCTGAAGATGTCTTCAGAGGAATTATTTTGTATTATTGTTCAACACTGTATTTACTTTGTATTACAATGAAATATTATGCTATCTGTCAGTAATTGTTGATTTCCCCCCATTTGCTTGTTATTTAATTGATACCAAAAACCACTTAGCATGTT

Ace file of the UniGene sp_v2.0_unigene1049 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium-chelatase subunit chlD, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RIG5_RICCO	-	-	75%
FL-Next	sp=Magnesium-chelatase subunit chlD, chloroplastic; Nicotiana tabacum (Common tobacco).	-	-	77%
Blast2go	magnesium-chelatase subunit chld	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Magnesium chelatase.	EC:6.6.1.1	-	0.0	88%

Source	KEGGs	Term	Type	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		88%
Blast2go	Metabolic pathways	01100		88%
Blast2go	Biosynthesis of secondary metabolites	01110		88%
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Thiamine metabolism	00730	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	88%
Blast2go	photosynthesis	GO:0015979	Biological Process	88%
Blast2go	magnesium chelatase activity	GO:0016851	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%
Blast2go	magnesium chelatase complex	GO:0010007	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Magnesium chelatase, ATPase subunit D	IPR011776	-	-
Sma3	Magnesium chelatase, ChlI subunit	IPR000523	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O24133

Fln msg:

Fln protein: MALSASATASYTRGRRLAFKETSCLSSFKGSGFLFNKCWFPQTRFPRRLGFARCNTSNGTALSAPDFEKNEYGRQYFPLAAVVGQDAIKTALLLGAVDNAIGGIAISGKRGTAKTVMARGLHAIIPPIEVVAGSIANSDPLCPEEWEEGLENRLKYNANGTLKTDIIKSPFVQIPLGVTEDRLLGSVDVEESVKSGTTVFQPGLLADAHRGVLYVDEINLLDEGISNLLLNVLTEGVNVVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADVPMEFDDRVSAVDLAIQFQEKSKQVFRSVEEGTDSAKTQIIFAREYLKEVSISRDQIKYLVMEALRGGCQGHRAELYASKVARSLAALEGRDKVGVDDLKKAVELVIIPRSTVNENPPEKQNQPPPPPPPPPQNQDPAEEQNEEDKDEEDDGDNEQQEEEQIPDEFIFDAEGGLVDSKLLFFAQQAQRRKGKAGRAKNVIFSEDRGRYIKPMLPKGPIRRLAIDATLRAAAPYQKLRRQRAFEKGENRRVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAAMQLLSESYTSRDQVSIIPFRGDAADVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRVMIVAITDGRANISLKRSTDPDSSATDSPKPSTQELKDEILEIAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISSATKEALAAFKSS*

Protein Length: 754

Fln nts: ATTTCATTTACGCTATCCACTGCAACACCCCGCTACCGTGTCCTGTAGAAATAAAATAAAAATATACTCAATTGGAATGGGGACTTCGAACTGAGTGAGTGGTGCACGGCC_-_ATGGCACTCTCCGCCTCGGCCACGGCCTCATATACCAGGGGAAGAAGATTAGCCTTCAAAGAAACTTCATGCCTATCATCATTTAAAGGATCAGGATTTCTTTTTAACAAATGCTGGTTCCCACAGACGCGCTTTCCTCGGCGACTCGGGTTTGCTCGTTGTAATACAAGCAATGGAACAGCTCTTTCTGCCCCCGACTTTGAGAAAAACGAGTATGGGCGCCAATATTTTCCTCTCGCCGCAGTTGTGGGACAGGATGCCATCAAGACAGCATTACTACTTGGAGCTGTTGATAATGCCATTGGTGGCATTGCCATTTCAGGGAAAAGAGGGACTGCCAAGACAGTAATGGCACGTGGATTGCATGCTATAATTCCACCTATTGAAGTTGTTGCGGGGTCTATTGCCAACTCTGACCCATTGTGTCCCGAAGAATGGGAAGAAGGACTAGAGAACCGACTAAAGTATAATGCTAATGGTACATTGAAAACAGATATAATAAAATCTCCATTTGTGCAGATACCACTTGGTGTAACAGAGGATAGGCTTTTAGGTTCAGTGGATGTAGAGGAGTCAGTCAAATCTGGAACAACGGTATTCCAGCCAGGTCTTCTTGCTGATGCTCACAGAGGAGTCCTATATGTTGATGAGATAAATCTTCTTGATGAAGGTATAAGCAATTTGCTTCTAAATGTTCTCACAGAAGGAGTTAATGTTGTGGAAAGAGAAGGAATCAGTTTTCGACATCCCTGCAAGCCACTTCTAATTGCTACGTACAATCCCGAGGAAGGTTCTGTACGAGAACATTTACTTGATCGCATTGCAATCAACCTCAGTGCTGATGTTCCCATGGAATTTGATGACCGTGTATCAGCAGTTGATCTTGCAATCCAATTCCAGGAAAAGTCCAAGCAAGTATTTCGGTCAGTTGAAGAAGGAACTGATTCAGCAAAGACACAGATCATTTTTGCAAGGGAATACCTAAAGGAAGTGAGCATTAGTAGGGATCAAATAAAGTATCTTGTTATGGAAGCCTTACGTGGTGGTTGTCAGGGTCACAGAGCTGAACTGTATGCTTCTAAAGTTGCAAGATCATTGGCCGCTCTTGAGGGTCGTGATAAAGTTGGGGTTGATGATCTCAAGAAAGCAGTAGAGCTGGTGATAATACCTCGTTCCACAGTTAATGAAAATCCACCGGAAAAACAGAACCAGCCTCCTCCACCGCCACCACCACCACCACAAAATCAGGATCCTGCAGAAGAACAAAACGAAGAAGATAAAGATGAGGAGGATGATGGTGATAATGAACAGCAAGAAGAAGAGCAAATACCAGATGAGTTTATCTTTGATGCAGAAGGTGGTTTGGTGGACTCAAAGCTGCTCTTCTTTGCACAACAGGCACAGAGGCGAAAGGGCAAAGCTGGTCGTGCCAAAAATGTAATATTTTCCGAGGATAGAGGACGATACATCAAGCCCATGCTTCCAAAGGGACCCATACGGAGGCTAGCCATTGATGCAACCCTAAGAGCAGCAGCACCCTATCAAAAATTGCGAAGACAGAGAGCTTTTGAAAAGGGAGAAAACAGACGGGTTTTTGTGGAGAAGACTGATATGAGAGCCAAGCGAATGGCCCGCAAAGCGGGAGCTCTGGTGATATTTGTTGTTGATGCCAGTGGAAGTATGGCACTGAATCGCATGCAAAATGCAAAAGGTGCTGCCATGCAACTTCTTTCTGAGAGCTATACAAGCAGAGATCAGGTATCAATTATTCCATTTCGTGGAGATGCAGCAGATGTCCTCCTACCACCATCTCGATCAATTGCAATGGCAAGAAAACGACTAGAGAGGCTACCTTGTGGTGGTGGCTCTCCCTTGGCTCATGGTCTTAGTATGGCTGTTCGAGTAGGATTAAATGCTGAGAAGAGTGGAGATGTTGGACGTGTGATGATAGTGGCTATCACAGATGGAAGGGCTAACATATCATTGAAAAGATCTACTGATCCAGATTCTAGTGCTACCGATTCACCAAAACCTTCCACACAAGAGTTGAAGGACGAGATATTAGAAATAGCAGGAAAGATTTACAAGGCAGGAATGTCCCTTCTTGTGATCGACACAGAGAATAAGTTTGTATCCACAGGGTTTGCAAAGGAGATTGCTAGAGTTGCTCAGGGGAAGTATTACTATTTACCTAATGCTTCCGATGCAGTTATATCCTCTGCAACAAAGGAGGCATTGGCTGCCTTCAAGAGTAGTTGA___TGTCAACTTGGAAAGCAGTGGACATCTCAAATTTTGACCTCCAATTCCTCATTTCTAGCTAATGAGGATCACTTCGTTTCTGATGCTGGTACTTTAGAGGATTCAGTGGTTGGATTCAGGCAAGTCTTATGGGTGCAGTAATACTACTTTAGGTTTCTCATTCCTTTGTGTGCGTTAGTGAACAAATGTCTACCTTGTATTCAAGTATTCATATCCATCTTAATATTTTGCAGAGGAACATTTTTATGGTGTATTAAATGCTGAAGATGTCTTCAGAGGAATTATTTTGTATTATTGTTCAACACTGTATTTACTTTGTATTACAATGAAATATTATGCTATCTGTCAGTAATTGTTGATTTCCCCCCATTTGCTTGTTATTTAATTGATACCAAAAACCACTTAGCATGTT

Fln Alignment:

Contig1049___PRRLGF-------ARCNTSNGT-ALSAPDF--EKNEYGRQYFPLAAVVGQDAIKTALLLGAVDNAIGGIAISGKRGTAKTVMARGLHAIIPPIEVVAGSIANSDPLCPEEWEEGLENRLKYNANGTLKTDIIKSPFVQIPLGVTEDRLLGSVDVEESVKSGTTVFQPGLLADAHRGVLYVDEINLLDEGISNLLLNVLTEGVNVVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADVPMEFDDRVSAVDLAIQFQEKSKQVFRSVEEGTDSAKTQIIFAREYLKEVSISRDQIKYLVMEALRGGCQGHRAELYASKVARSLAALEGRDKVGVDDLKKAVELVIIPRSTV-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPDEFIFDAEGGLVDSKLLFFAQQAQRRKGKAGRAKNVIFSEDRGRYIKPMLPKGPIRRLAIDATLRAAAPYQKLRRQRAFEKGENRRVFVEKTDXXXXXXXXXAGALVIFVVDASGSMALNRMQNAKGAAMQLLSESYTSRDQVSIIPFRGDAADVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMAVRVGLNAEKSGDVGRVMIVAITDGRANISLKRXXXXXXXXXXXXXXXTQELKDEILEIAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISSATKEALAAFKSS
O24133______________PKRLKFRLRISATATIDSPNGAVAVVEPEKQPEKISFGRQYFPLAAVIGQDAIKTALLLGAIDREIGGIAICGKRGTAKTLMARGLHAILPPIEVVVGSMANADPNCPDEWEDGLADRAEYGSDGNIKTQIVKSPFVQIPLGVTEDRLIGSVDVEESVKSGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRIAINLSADLPMSFDDRVAAVDIATRFQECSNEVFKMVDEETDSAKTQIILAREYLKDVTISRDQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAIDGREKVGVDELKKAVELVILPRSTIVENPPDQQNQQPPPPPPPPQNQDSSEEQNEEEEKEEEDQEDEKDRENEQQQPQVPDEFIFDAEGGLVDEKLLFFAQQAQRRKGKAGRAKKVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRRAKDIQK--TRKVYVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVCIIPFRGDAAEVLLPPSRSISMARNRLERLPCGGGSPLAHGLTTAVRVGMNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAEASDAPRPSSQELKDEILEVAGKIYKTGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAATKDALSALKES

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
711	10			90	0.90298
723		90	10		0.90298
724			10	90	0.90298
729		10		90	0.90298
730		90	10		0.90298
735		11	88		0.923564
760	83	16			0.994512
761		16		83	0.994512
762	16			83	0.994512
902			90	10	0.90298
905	80		20		0.999996
907	90		10		0.90298
909		10		90	0.90298
910	10			90	0.90298
912	90	10			0.90298
913		10		90	0.90298
915	10	90			0.90298
916		90	10		0.90298
922	10			90	0.90298
924			10	90	0.90298
925	10		90		0.90298
927			10	90	0.90298
1952		87		12	0.992554
1995	90	10			0.90298
2057		11		88	0.923564
2060			88	11	0.923564
2317			11	88	0.923564
2488		66	33		0.997452
2698		40	60		1.0
2707		60	40		1.0
2708		40	40		1.0
2709		60		40	1.0
2712	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1432	1447	GTG GTG GTG GTG GTG G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain