SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1044

Length: 2014 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1044
CGTCGTGACCTTGGCTGTCACTCATTTCATAGCTAATGGTCCAACTCATTTTCTTCTTCGAGGAACACAAGAGCAGCGTTCGATTCTTCATGTCCTTCCTGCATCATTTTGAATGGTTATTCACACAGACGCCTGAAAAACCATGATAATCCGCGGATGTAAGATTGATTCCCACATGTATTCCGCTTCTGGATTTCAATAGATATATGAAAAAATCCATAGATATATGAAAATGCCAGTCACCAATGAGCAATAATCAAGCCTGAGAACAATTGTTCTCGGCGAGAAGATAATTTTTCTTATTGGAATTTGACTGTAAAGAATAACAAATAATGCCTACTTCTGTTGGTGTTCACGTTGGTGTTCACGAGGCCTCTGTATGGATGGATACAGTTTCCGTCTGCCCTATTTTCTCTGTGGAATCCGCTGAGATCGCCACACTGTTAGACCCACTTTTTTGTAGCATAGTTCAGAGGAGTTCAGTTAGTGCTGCCAGGTTCAATGCTCAAAACAATGGCAAAATATATTTAAGCCCCTTGCAAGCAGTTCTTCTACGAGGAACCATGGTGGTTGGAGGGAGTTCAACCAGTTGATAAGGCTGCATTGTGAGAGGGTTCATATTGGTTTTGCTTCAATAAATGCTCCTGGCTCTTCCTATGGGTTGCACGGCGGGGATTCTACTGTCAGGGGGGAGGAATGCAACGGGGTTCAGATTAGTGGTAGAGATAGTGCTAAGAAGGTTCTAGTTCTCATGAGTGACACAGGTGGTGGACACCGTGCTTCGGCAGAGGCCATCAAGGCGGCTTTCCAGCTAGAGTTTGGTGATCAGTACAAGGTGTACGTGACAGACTTATGGAAAGATCACACCCCTTGGCCATTTAATCAAATACCGAGGAGCTACAGCTTCTTGGTGAAGCATGGGACTCTCTGGAAAGCTACCTTCCATGGAACTGCTCCGCGCATTGTACATCAAACAAATTTTGCAGCAACGCATGCCTTTATTGCTAGAGAAGTGGCAAGGGGTTTGATGAAGTACCAACCCGATATAATTGTAAGTGTTCATCCTCTAATGCAACATGTTCCGCTTCATATTCTGAAGTCAAGGGGTCTTCTTAGAAAGATATTATTCACCACTGTCATCACAGATTTGAGCACCTGTCACCCAACATGGTTCCATAAGCTTGTAACAAGATGCTACTGTCCAACCCCCGAGGTTGCAAGAAGAGCAGCAAAGGCAGGTTTACAACCTGGGCAAATACGTGTATATGGACTGCCAGTACGGCCATCCTTTTGCAAGGCTATTCGCACAAAGGATGAACTTAGAAGAGACTTGGGAATGGATGAGGACTTACCTGCAGTCTTATTGATGGGAGGAGGAGAAGGCATGGGTCCTGTTGAGGCAACTTCTCGGGCCCTTGGAGAAACCCTATACAATAGGAAGTTAGGAGAACCTGTTGGTCAACTTATTGTTATTTGCGGGCGTAATAGAAAGCTTGCCAACAAGCTGAAGTCCATCGAATGGAAGATGCCAGTGCAGATAAGGGGCTTTGAGACCAACATGGAGGAATGGATGGGAGCTTGTGACTGCATCATAACAAAGGCAGGACCAGGTACAATCGCAGAAGCAATGATCAGAGGTCTTCCTATTATCCTTAATGATTACATTGCTGGCCAGGAAGCTGGGAATGTGCCTTACGTTGTCGAAAATGGTGCTGGAAAGTTTAGTAAATCACCAAAAGAGATTGCCAATATTGTTGCTGATTGGTTTGGTCCAAAAGTGGAGGAACTCCATAAGATGTCCCAGAATGCACTAAAACTTGCTCGACCAGATGCTGTTTTTAAAATTGTACATGATATTGATGAACTTCTCCATCAGAGAGATGTAAATCCTCCGTATTCCTTTTCTTTAAGTTGACACTTTATTTCCTGATGTGTCTAAATTCAATCTTTAATTTCACGCCTCTTCAATTTTGACGCGAATCCAATTTATTTCAATTGATTTGTTTTCTGCCTC

Ace file of the UniGene sp_v2.0_unigene1044 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable monogalactosyldiacylglycerol synthase, chloroplastic n=2 Tax=Phaseoleae RepID=MGDG_SOYBN	-	-	73%
FL-Next	sp=Probable monogalactosyldiacylglycerol synthase, chloroplastic; Glycine max (Soybean) (Glycine hispida).	-	-	73%
Blast2go	mgdg synthase type a	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Monogalactosyldiacylglycerol synthase.	EC:2.4.1.46	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	83%
Blast2go	galactolipid biosynthetic process	GO:0019375	Biological Process	83%
Blast2go	lipid glycosylation	GO:0030259	Biological Process	83%
Blast2go	embryo development	GO:0009790	Biological Process	83%
Blast2go	1,2-diacylglycerol 3-beta-galactosyltransferase activity	GO:0046509	Molecular Function	83%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	83%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 28, C-terminal	IPR007235	-	-
Sma3	Diacylglycerol glucosyltransferase, N-terminal	IPR009695	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9FZL4

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 476 - 530

Fln protein: CCQVQCSKQWQNIFKPLASSSSTRNHGGWREFNQLIRLHCERVHIGFASINAPGSSYGLHGGDSTVRGEECNGVQISGRDSAKKVLVLMSDTGGGHRASAEAIKAAFQLEFGDQYKVYVTDLWKDHTPWPFNQIPRSYSFLVKHGTLWKATFHGTAPRIVHQTNFAATHAFIAREVARGLMKYQPDIIVSVHPLMQHVPLHILKSRGLLRKILFTTVITDLSTCHPTWFHKLVTRCYCPTPEVARRAAKAGLQPGQIRVYGLPVRPSFCKAIRTKDELRRDLGMDEDLPAVLLMGGGEGMGPVEATSRALGETLYNRKLGEPVGQLIVICGRNRKLANKLKSIEWKMPVQIRGFETNMEEWMGACDCIITKAGPGTIAEAMIRGLPIILNDYIAGQEAGNVPYVVENGAGKFSKSPKEIANIVADWFGPKVEELHKMSQNALKLARPDAVFKIVHDIDELLHQRDVNPPYSFSLS*

Protein Length: 477

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCATAGCTAATGGTCCAACTCATTTTCTTCTTCGAGGAACACAAGAGCAGCGTTCGATTCTTCATGTCCTTCCTGCATCATTTTGAATGGTTATTCACACAGACGCCTGAAAAACCATGATAATCCGCGGATGTAAGATTGATTCCCACATGTATTCCGCTTCTGGATTTCAATAGATATATGAAAAAATCCATAGATATATGAAAATGCCAGTCACCAATGAGCAATAATCAAGCCTGAGAACAATTGTTCTCGGCGAGAAGATAATTTTTCTTATTGGAATTTGACTGTAAAGAATAACAAATAATGCCTACTTCTGTTGGTGTTCACGTTGGTGTTCACGAGGCCTCTGTATGGATGGATACAGTTTCCGTCTGCCCTATTTTCTCTGTGGAATCCGCTGAGATCGCCACACTGTTAGACCCACTTTTTTGTAGCATAGTTCAGAGGAGTTCAGTTAGTGCTGCCAGGTTCAATGCTCAAAACAATGGCAAAATATATTTAAGCCCCTTGCAAGCAGTTCTTCTACGAGGAACCATGGTGGTTGGAGGGAGTTCAACCAGTTGATAAGGCTGCATTGTGAGAGGGTTCATATTGGTTTTGCTTCAATAAATGCTCCTGGCTCTTCCTATGGGTTGCACGGCGGGGATTCTACTGTCAGGGGGGAGGAATGCAACGGGGTTCAGATTAGTGGTAGAGATAGTGCTAAGAAGGTTCTAGTTCTCATGAGTGACACAGGTGGTGGACACCGTGCTTCGGCAGAGGCCATCAAGGCGGCTTTCCAGCTAGAGTTTGGTGATCAGTACAAGGTGTACGTGACAGACTTATGGAAAGATCACACCCCTTGGCCATTTAATCAAATACCGAGGAGCTACAGCTTCTTGGTGAAGCATGGGACTCTCTGGAAAGCTACCTTCCATGGAACTGCTCCGCGCATTGTACATCAAACAAATTTTGCAGCAACGCATGCCTTTATTGCTAGAGAAGTGGCAAGGGGTTTGATGAAGTACCAACCCGATATAATTGTAAGTGTTCATCCTCTAATGCAACATGTTCCGCTTCATATTCTGAAGTCAAGGGGTCTTCTTAGAAAGATATTATTCACCACTGTCATCACAGATTTGAGCACCTGTCACCCAACATGGTTCCATAAGCTTGTAACAAGATGCTACTGTCCAACCCCCGAGGTTGCAAGAAGAGCAGCAAAGGCAGGTTTACAACCTGGGCAAATACGTGTATATGGACTGCCAGTACGGCCATCCTTTTGCAAGGCTATTCGCACAAAGGATGAACTTAGAAGAGACTTGGGAATGGATGAGGACTTACCTGCAGTCTTATTGATGGGAGGAGGAGAAGGCATGGGTCCTGTTGAGGCAACTTCTCGGGCCCTTGGAGAAACCCTATACAATAGGAAGTTAGGAGAACCTGTTGGTCAACTTATTGTTATTTGCGGGCGTAATAGAAAGCTTGCCAACAAGCTGAAGTCCATCGAATGGAAGATGCCAGTGCAGATAAGGGGCTTTGAGACCAACATGGAGGAATGGATGGGAGCTTGTGACTGCATCATAACAAAGGCAGGACCAGGTACAATCGCAGAAGCAATGATCAGAGGTCTTCCTATTATCCTTAATGATTACATTGCTGGCCAGGAAGCTGGGAATGTGCCTTACGTTGTCGAAAATGGTGCTGGAAAGTTTAGTAAATCACCAAAAGAGATTGCCAATATTGTTGCTGATTGGTTTGGTCCAAAAGTGGAGGAACTCCATAAGATGTCCCAGAATGCACTAAAACTTGCTCGACCAGATGCTGTTTTTAAAATTGTACATGATATTGATGAACTTCTCCATCAGAGAGATGTAAATCCTCCGTATTCCTTTTCTTTAAGTTGA___CACTTTATTTCCTGATGTGTCTAAATTCAATCTTTAATTTCACGCCTCTTCAATTTTGACGCGAATCCAATTTATTTCAATTGATTTGTTTTCTGCCTC

Fln Alignment:

Contig1044___EFNQLIRLHCERVHIGFASINAPGSSYGLHGGDST----VRGEECNGVQISG-------RDSAKKVLVLMSDTGGGHRASAEAIKAAFQLEFGDQYKVYVTDLWKDHTPWPFNQIPRSYSFLVKHGTLWKATFHGTAPRIVHQTNFAATHAFIAREVARGLMKYQPDIIVSVHPLMQHVPLHILKSRGLLRKILFTTVITDLSTCHPTWFHKLVTRCYCPTPEVARRAAKAGLQPGQIRVYGLPVRPSFCKAIRTKDELRRDLGMDEDLPAVLLMGGGEGMGPVEATSRALGETLYNRKLGEPVGQLIVICGRNRKLANKLKSIEWKMPVQIRGFETNMEEWMGACDCIITKAGPGTIAEAMIRGLPIILNDYIAGQEAGNVPYVVENGAGKFSKSPKEIANIVADWFGPKVEELHKMSQNALKLARPDAVFKIVHDIDELLHQRDVNPPYS
Q9FZL4______________DFNRAVRFHCEKIPIGFASLRVGDGGDGADGNGNGEGNGVRVDECGGVENEGFRGNGVEGEKPKKVLILMSDTGGGHRASAEAIKAAFYQEFGDDYQVFVTDLWADHTPWPFNQLPRSYSFLVKHGPLWKMTYYGTAPRVVHQSNFAATGTFIAREVAKGLMKYQPDIIISVHPLMQHVPLRILRSKGLLKKIVFTTVITDLSTCHPTWFHKLVTRCYCPTTDVAQRALKAGLQQSQIKIFGLPVRPSFVKPVQPKDELRRELGMDEDLPAVLLMGGGEGMGPIEATARALGDSLYDENIGAPVGQILVICGRNKKLANKLSSINWKVPVQVKGFVTKMEECMGACDCIITKAGPGTIAEAQIRGLPIILNDYIAGQEAGNVPYVVENGCGKFSKSPKDIAKIVAEWFGPKAYELQQMSQNALRLARPDAVFKIVHDLHELVRQRSYLPEYS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
598	80	20			0.995493
762	25		75		0.996473
764	25	75			0.996473
765		75		25	0.996473
766	75			25	0.996473
1789	33		66		1.0
1976	25			75	0.996473
1980	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain