SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1027

Length: 2106 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1027
GAAAAAGAAAAAATTGCAGAGATTTTTCAGATTTTCTGGGTTTTTCCTACCAACACCAACGATGGTAGTCGGCTTTTTCCAGAAATATGGAGCAAGTTTGCTGCTGTTGGCTTTATCCATGGCCGCCGGAATTGCCTCTGCAGATGACGAAAGCCCAGTAGCGACCTGCTCTGCAAAAGATAAAGAAGCTCTCCTGAGCTTCAAGGCCGCCATTACCGAAGACACGACGGAAACTCTGATCACCTGGACGCCGGGCACCGATTGCTGCGGGGGAGGCTGGGCCGGAATCGAATGCGATGCGAGCAGCGGGAGGGTCACCCAACTGGTGCTGCAAAACCCGGAAGAAACGAACGCCACAATGTACATGCGCGGAACTGTGTCGCCATCTCTGGGTAATCTCAATTCTCTGCAAATTTTGATCATTAGCGGACTGAAGCAGATAACGGGGCCGATCCCGGGGTCTCTCTCTAACCTACCATGGCTAACGCAGCTGTACATCGAGAAAAATCAGGTCACGGGTTCGATTCCCGGGACGCTCGGGAGACTCTCGAAGCTCCAAGCGCTTTCTTTCGCGGGGAACAGTCTCTCCGGCCCGATTCCCCCAGAGTTCGGCTTGCTCCGGTCTCTACTTCAGCTCAACCTCGGCAAGAACCGTCTGACAGGCGTCCTGCCAACGGCTCTAAAGAATATCCGCGGCTTGCAATCTTTGGATACCAACGGTAATATTCTTTCCGGGCCAATTCCGGCCTTCATCGGCTCGTTTTCCAATCTAACATATCTGGACCTCTCTGACAATGAATTCGACAGGCCCAATTCCTGGTTCTCATTTCTGAATTATCCGCCATACAAGACCTATCTCTAGCTCGAAATCGACTAACAGGCAAGATTCCATACTCTCTGGGTCAGATGAATTCTCTTGCTAGCCTTTCTCTCAGTGAAAATATGCTTGTAGGAGTTATTCCTGAATCTATCAGTAAAATGTCCAAGTTATGGTATCTGAATCTTTCAAAAAACCATTTGTCTGATCCCCTTCCCTCTGGCCTAGCCAAAGCCTCTGCTCTACTGTGCCTTGATCTGTCTTACAATAATCTGCATCTGGGTAGGATTCCAGACTGGATAACCAGAAAAGAGATGACAAATCTTCACCTTGCAGGCTGTGGGGTCAAACAATGTCTGAGCACATGGAAACCTATTGCCATGAATTCCTTGCTGAGTTCCATTGATCTTTCTAACAACAATCTTACAGGAGATATAAGTCACCTTCTGAAGAACATGACAAGCCTGGAAAAAGTTTATCTCTACAACAACAGTCTCACCTCCAACCTCTCTGAGGTTTCCCTGCCGGATTCTATCTCAGTTCTTGATCTTCACTCAAATAAATTGTATGGGTCTATAGAGAAACTCTTCAGTGACAATATCTCAGAATCTTGCCCATCCCCAGGGGGGTGCCTGGAGTTCATCAATCTGGCCAACAACGAGATCACAGGCAGGATCCCGGAGATCAATGGCGAGCGCAGCATCAAGTGGCTGGACTTATCAGGTAATCGTTTGAAGGGCAGCGTTCCAACTTCGATCTCCATGTTAAAGAAAATTGAGCGCCTGGATTTCTCAAGAAATCGGATCGTCGGCAAGATACCGGGGCCCATGGGCGAGCTGAAGGAGCTGAGATGGTTGGATCTGTCATGGAACGGTTTCAAAGGGAAAATTCCAGGGCAGATGTTGGGTTTGAAGCATTTGAAGTATATGAATCTGAGAAACAATCGTCTCTGTGGCCAGATTCCTCAAGCGAAACCCTTGACTGTTTTCCCGGCTTCTGCTTATGCTCACAATGATTGCCTCTGTGGGTCTCCTCTTCCTCCCTGCAAGAACCAAAAGCTTTGATCATGGCGGCCTTCAAGCAGAAATTAATTAGTGGGTCTCGTACAACGTCTCGTTGCAATTGATATTCATTCTTTTAGAGAAAATTTAAATGATGAATAGTCATTGCTGCTTGCCCGTGAGAGAGCCGAAGCTTTCGCTTTAAGTAGATATGTAGGTCTGGTAATGTTGGTGGCATTTCATACCAGAGCCCTTTCCTCAAAATTGGAACTGCATTTAATAAAAATT

Ace file of the UniGene sp_v2.0_unigene1027

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RGI4_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	serine-threonine protein plant-	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	61%
Blast2go	cellular process	GO:0009987	Biological Process	61%
Blast2go	catalytic activity	GO:0003824	Molecular Function	61%
Blast2go	cell wall	GO:0005618	Cellular Component	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: Separated hits, possible frame ERROR between 811 and 826,

Fln protein: MVVGFFQKYGASLLLLALSMAAGIASADDESPVATCSAKDKEALLSFKAAITEDTTETLITWTPGTDCCGGGWAGIECDASSGRVTQLVLQNPEETNATMYMRGTVSPSLGNLNSLQILIISGLKQITGPIPGSLSNLPWLTQLYIEKNQVTGSIPGTLGRLSKLQALSFAGNSLSGPIPPEFGLLRSLLQLNLGKNRLTGVLPTALKNIRGLQSLDTNGNILSGPIPAFIGSFSNLTYLDLSDNEFDRxxxxxxISELSAIQDLSLARNRLTGKIPYSLGQMNSLASLSLSENMLVGVIPESISKMSKLWYLNLSKNHLSDPLPSGLAKASALLCLDLSYNNLHLGRIPDWITRKEMTNLHLAGCGVKQCLSTWKPIAMNSLLSSIDLSNNNLTGDISHLLKNMTSLEKVYLYNNSLTSNLSEVSLPDSISVLDLHSNKLYGSIEKLFSDNISESCPSPGGCLEFINLANNEITGRIPEINGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRIVGKIPGPMGELKELRWLDLSWNGFKGKIPGQMLGLKHLKYMNLRNNRLCGQIPQAKPLTVFPASAYAHNDCLCGSPLPPCKNQKL*

Protein Length: 608

Fln nts: GAAAAAGAAAAAATTGCAGAGATTTTTCAGATTTTCTGGGTTTTTCCTACCAACACCAACG_-_ATGGTAGTCGGCTTTTTCCAGAAATATGGAGCAAGTTTGCTGCTGTTGGCTTTATCCATGGCCGCCGGAATTGCCTCTGCAGATGACGAAAGCCCAGTAGCGACCTGCTCTGCAAAAGATAAAGAAGCTCTCCTGAGCTTCAAGGCCGCCATTACCGAAGACACGACGGAAACTCTGATCACCTGGACGCCGGGCACCGATTGCTGCGGGGGAGGCTGGGCCGGAATCGAATGCGATGCGAGCAGCGGGAGGGTCACCCAACTGGTGCTGCAAAACCCGGAAGAAACGAACGCCACAATGTACATGCGCGGAACTGTGTCGCCATCTCTGGGTAATCTCAATTCTCTGCAAATTTTGATCATTAGCGGACTGAAGCAGATAACGGGGCCGATCCCGGGGTCTCTCTCTAACCTACCATGGCTAACGCAGCTGTACATCGAGAAAAATCAGGTCACGGGTTCGATTCCCGGGACGCTCGGGAGACTCTCGAAGCTCCAAGCGCTTTCTTTCGCGGGGAACAGTCTCTCCGGCCCGATTCCCCCAGAGTTCGGCTTGCTCCGGTCTCTACTTCAGCTCAACCTCGGCAAGAACCGTCTGACAGGCGTCCTGCCAACGGCTCTAAAGAATATCCGCGGCTTGCAATCTTTGGATACCAACGGTAATATTCTTTCCGGGCCAATTCCGGCCTTCATCGGCTCGTTTTCCAATCTAACATATCTGGACCTCTCTGACAATGAATTCGACAGGCCxxxxxxxxxxxxxxxCATTTCTGAATTATCCGCCATACAAGACCTATCTCTAGCTCGAAATCGACTAACAGGCAAGATTCCATACTCTCTGGGTCAGATGAATTCTCTTGCTAGCCTTTCTCTCAGTGAAAATATGCTTGTAGGAGTTATTCCTGAATCTATCAGTAAAATGTCCAAGTTATGGTATCTGAATCTTTCAAAAAACCATTTGTCTGATCCCCTTCCCTCTGGCCTAGCCAAAGCCTCTGCTCTACTGTGCCTTGATCTGTCTTACAATAATCTGCATCTGGGTAGGATTCCAGACTGGATAACCAGAAAAGAGATGACAAATCTTCACCTTGCAGGCTGTGGGGTCAAACAATGTCTGAGCACATGGAAACCTATTGCCATGAATTCCTTGCTGAGTTCCATTGATCTTTCTAACAACAATCTTACAGGAGATATAAGTCACCTTCTGAAGAACATGACAAGCCTGGAAAAAGTTTATCTCTACAACAACAGTCTCACCTCCAACCTCTCTGAGGTTTCCCTGCCGGATTCTATCTCAGTTCTTGATCTTCACTCAAATAAATTGTATGGGTCTATAGAGAAACTCTTCAGTGACAATATCTCAGAATCTTGCCCATCCCCAGGGGGGTGCCTGGAGTTCATCAATCTGGCCAACAACGAGATCACAGGCAGGATCCCGGAGATCAATGGCGAGCGCAGCATCAAGTGGCTGGACTTATCAGGTAATCGTTTGAAGGGCAGCGTTCCAACTTCGATCTCCATGTTAAAGAAAATTGAGCGCCTGGATTTCTCAAGAAATCGGATCGTCGGCAAGATACCGGGGCCCATGGGCGAGCTGAAGGAGCTGAGATGGTTGGATCTGTCATGGAACGGTTTCAAAGGGAAAATTCCAGGGCAGATGTTGGGTTTGAAGCATTTGAAGTATATGAATCTGAGAAACAATCGTCTCTGTGGCCAGATTCCTCAAGCGAAACCCTTGACTGTTTTCCCGGCTTCTGCTTATGCTCACAATGATTGCCTCTGTGGGTCTCCTCTTCCTCCCTGCAAGAACCAAAAGCTTTGA___TCATGGCGGCCTTCAAGCAGAAATTAATTAGTGGGTCTCGTACAACGTCTCGTTGCAATTGATATTCATTCTTTTAGAGAAAATTTAAATGATGAATAGTCATTGCTGCTTGCCCGTGAGAGAGCCGAAGCTTTCGCTTTAAGTAGATATGTAGGTCTGGTAATGTTGGTGGCATTTCATACCAGAGCCCTTTCCTCAAAATTGGAACTGCATTTAATAAAAATT

Fln Alignment:

Contig1027___PTMVVGF-------FQKYGXXXXXXXXXXXXXXXXXDDESPVATCSAKDKEALLSFKAAXXXXXXXXXXXXXPGTDCCGGGWAGIECDASSGRVTQLVLQNPEETNATMYMRGTVSPSLGNLNSLQILIISGLKQITGPIPGSLSNLPWLTQLYIEKNQVTGSIPGTLGRLSKLQALSFAGNSLSGPIPPEFGXXXXXXXXXXGKNRLTGVLPTALKNIRGLQSLDTNGNILSGPIPAFIGSFSNLTYLDLSDNEFDRPxxxxxISELSAIQDLSLARNRLTGKIPYSLGQMNSLASLSLSENMLVGVIPESISKMSKLWYLNLSKNHLSDPLPSGLAKASALLCLDLSYNNLHLGRIPDWITRKEMTNLHLAGCGVKQCLSTWKPIAMXXXXXXXXXXXXXXTGDISHLLKNMTSLEKVYLYNNSLTSNLSEVSLPDSISVLDLHSNKLYGSIEKLFSDNISESCPSPGGCLEFINLANNEITGRIPEINGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRIVGKIPGPMGELKELRWLDLSWNGFKGKIPGQMLGLKHLKYMNLRNNRLCGQIPQAKPLTVFPASAYAHNDCLCGSPLPPC
B8LS28______________PSMAVGLPGVICICFQKHGAILLLLVLSLAAVITSGDDENPGATCFLKDKEALLSFKAAIPEDTTGTLITWTPGTDCCGGGWAGIQCDARSGRVTQLVLQNPEETNDTMYMRGTVSPSLGNLKSLQILIISGLKHITGTIPGSLSDLSWLTQLYIENNRVTGPVPRVLGSLSRLQALSFTGNSLSGPIPLELGELQSLIQLNLGKNRLTGVLPTTLKNIRGLQSLDINGNILSGPIPAFLGSFVNLTYLDLSGNEFTGPxxxxxIADLSSIQDLSLSRNRLTGEIPYSLGRMNSLSSLSLSENMLVGVIPESISKMSNLWNLNLSKNHLSDPLPSGLAKASALVRLDLSYNNLHLGRIPDWITKKEMTNLHLAGCGVRQCLSTWKPRAMNSLLSSIDLSNNNLTGDISQLLKNMTSLQRVYLSNNSLTTNLSEVSLPDSISVLDLHSNKLYGSIEKLFYDNISESCPSPGGCLEFINLANNEITGRIPEIDGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRMVGKIPGAMGELKELRWLDLSWNGLKGRIPGQILGLKHLKHMNLRNNRLCGEIPQGKPLNVFPASAYAHNDCLCGSPLPRC

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1144		16		83	0.994512
1255			16	83	0.994512
1510	77	11	11		0.968132
1511	77		11	11	0.968132
1512			11	88	0.923564
1517	88	11			0.923564
1518	11		88		0.923564
1520			88	11	0.923564
1539		88		11	0.923564
1617	90		10		0.90298
1875		66		33	1.0
1894		71		28	1.0
2002	16	83			0.994512
2010	83		16		0.994512
2012		83		16	0.994512
2013		83		16	0.994512
2016	83	16			0.994512
2017	16		83		0.994512
2026	16	16		66	0.988813
2027		16		83	0.994512
2055		20		80	0.995493
2059	20		80		0.995493
2081		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain