SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1020

Length: 3121 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene1020
ATGGGATCCTCAGGTTTTTAATGGTGGTATTTGTACTGGTTACAGTTGTTTTCTGTACAGTGTAACATGGATATCTGATGTTCGCCACAGTGATTCTTATGGATCATACATATATATATTTCAATCAGGTCTGATATATAGTTGTGGGAATCATATCTAATACTGAAAGCATTTGCTTTCTGCTGCTGCTGTGATCTATTCCTATGTTCTGTATACGAATAGGATAGATTACCTTTACTCATATGAAGCCTCTGCTGCTGCTAGTTAGTGTGTTTATGTTTCAGTATATATCTTATTCTGGTCATGCCGAGTGTTTTATGCTGTGGATATGGTCTGGGAATTAAGAGTAACCGAGGCTCAAGAGGCCGAAGCTCTTAGAATCTTGATATTTTAATGTTTATCTTTTTAACGTCCTTTGAGACTTGACTTGGCCTTGGCTGGATTGGCGGATCATGTGTGAAGAAGATTTTGTTATTATAAATCAAGTTTTTTTATACATGATCATGCCAACAGCAAATTGTAATGAGTCATGGTCCTAACGGTGGCTATTCTTACAGTTTGTAGGAGCCAGCCATCCTTCTTGTAGACTTTGAGGCAGCAGTCTTGTTGTTCCTGCTATTAAGGGATATGGCTATGAGCTAATTAAAATTGAGGGCAACAATGGAAACGAATCTCTTAACGCAGCACAATCAGGTTGACATGATGCTGAAGAGGACTATGATGGTGGTTATTGAGTGTTGATTAAATAACAGACCCCCCAACAATAGAAACAGAACATCAGTTGGATGCTGGTTATAATTGAGACAGTTGGGTTATGACTGTAAAACTGAAGACATTGGATGGCAATGGATTTGAGTCAGAATGGCTGCATGACAGTGGTTATACTTTGATTTAGCTGGGGTTGTGGTGATGGATATATGGCAGCCGTGGTTATGGATTTTCATGGGAGTGGCTGTTTGATCAATATATGGCAGTTTCTACTTATGTGGATGAATATTTCACAAAGGGGAATGCCTATATGGAAGTAGTTTTATAACCATGGTTATGGACTTAAGTTTGATCAATTGTATGAAAGTGTGTACATGGCTCTAGTTAAGGGCACGAAGATAGGAAGCTCTGGATATGGACTTCAGCTTGGTGGCTGTATGACACTGGGTGCCTTTATATGCTTAAGGATTTGAGTTGGGTTCATTGATTTCATTTTGTTGCAGATAATTTGAGAAGCAATCCGGGGATGAATCTAAACGATCATACTTACAATTTATCACCTATGGCTAATTCAGGAAATCCGGAAGAGCAGATTGATGAGGATGCAGTGGATGACTTTATGAACTACCAACCCGAGTCTAAAAAGAGAAGACTTACAGTAGAACAGGTGAGGTCTTTAGAGAGGAGTTTCGAAATCGAGACCAAGCTGGAACCAGAGAAAAAGATACAGTTGGCTCAAGAGCTTGGACTTCAACCCCGTCAAGTAGCTATTTGGTTCCAGAACAGAAGGGCGAGATGGAAGACCAAGCAGCTTGAGAGAGATTACAGCGTTCTCAAAGCTAGTTATGATGCTTTAAAATCTGATTTTGAGAGATTGCAGCAGGAAAACAAAAATATCCGTGCCGAGCTGGAGAGTTTAAAAGAGAAGCTGGAAGAAGCAGATTGCTGCAAAGAGGACAACCACAGTGACATGGCAACATCAACGAAGGTAACAAGCACCATTGAAAATAGCAAGAAACTTGCAGCAGATGTTGCAGGCGAGGAAAATGATATTGACATCAAGCCTTTCAGTGATATTACACTGCTCTTCAAGGAGAAAGATATGGGTTTGGAGAAGATGGATATTAAGCCGTTCAGAGTAATGTTATTGAATGAGAAAGAGGGATCTTTTAGCCCTGGCAGTGACTGTAGTGCCAATACAAGGAATGAAGACAAGAATCCCCCACATCAAATCCTTAGTCATCTTGCACAGGCTTCTTCATCTATGAAATACCCGTCTGGTACTAATAATATAGCTGGTATGGATAACATCAATGACCAAGGTCTTATGCATCTGGCTGAGGCACTTTGTGGCATGGGCCTTCCTCCAAAAGCATATCAGCAACTTTTCAGAGTAGATGAAGGATATCTTCATGAAGATGCTTGCAACCACTTTTCCAATGAAGATGACCAAGGTGCTCCAAGTACTCTGCCATGGTGGGAGTACTGGCCTTGAGCCTTGCTCAGTAGTAGTAAATTATCTTGCCCTCGCAATAGATATATGGCAGAAAGGAAAAATTAACCTTATGGCCAAATTAATATTCTGTTGGTGAGATGGATGATTGTAAATTCTTATGGCTTGCAACCAAGTCTGCTTAAAGATTGTAAAAGAAGCAGATTCCTGCAATATTAAGTTACTGTAAATTTCAGTATGCATTAAATGTATATTGCTGGCTATGTCCTCAGGGGATTGCAGTGGTGGTGGGGGAAGAGGAGAAATAGTAAAAGAGAAACGCTGCTAAGTCACAAATTTAGGCTGAACATAAATTGGTCCTTTTGGGACCTCTGCGAGACAGCTTCTATCTTGGCACATCTTCAAACTAAACAGTTTTGGAGGATAATCTGCAGTCTGGATTGGATTATAGATTGACTACTAAATTCGGAGTATTGCATGTACAGAGAAGGAGAAAGTCATGGGAAAAAGGGCCTTCCTTTACGCATGCCATGTACTCTCCATGATAAGTTTATGCAAGCTTTATTATAAATCTATATTGTTCAATTTAAAGGAGGGTGAAATGATGAAAATCTCATAAACATGCAGGCTAAGCTAAATCAACATAGACAGTGGTTATATACAAGCCTACTGGCAGAAAGCTATACACAAAGTATGGTAATAACCTATTTCATAATCAATATACCCTTCAACTACAATATTTGTTGCACAAAGAATTGATACTGCGAAGGAGAAATGAACGGACCATCTTAGCATATTTAGATTGTTGCTTTATCTGCCTACAAATAGGGTTGAAAAGTTTTGAATGCTCTGATTACCTTAAAGTGTTTGGGACATTGTTTTTAAGATATTCACATACAAGAGTTTAAGATTTGTTCCAAATTCTCGGTTAGTTGTAAAATACAGAAAATACTCAATACC

Ace file of the UniGene sp_v2.0_unigene1020

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeodomain-leucine zipper protein 57 [Glycine max]	-	-	5.0e-34	54%
FL-Next	Isoform 2 of Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7	-	-	0.0	53%
Blast2go	homeobox-leucine zipper protein athb-6-like	-	-	2.01282e-38	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	2.01282e-38	70%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.01282e-38	70%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	2.01282e-38	70%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	2.01282e-38	70%
Blast2go	nucleus	GO:0005634	Cellular Component	2.01282e-38	70%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q00466-2

Fln msg: your sequence is longer than subject: 323 - 151

Fln protein: MNLNDHTYNLSPMANSGNPEEQIDEDAVDDFMNYQPESKKRRLTVEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKASYDALKSDFERLQQENKNIRAELESLKEKLEEADCCKEDNHSDMATSTKVTSTIENSKKLAADVAGEENDIDIKPFSDITLLFKEKDMGLEKMDIKPFRVMLLNEKEGSFSPGSDCSANTRNEDKNPPHQILSHLAQASSSMKYPSGTNNIAGMDNINDQGLMHLAEALCGMGLPPKAYQQLFRVDEGYLHEDACNHFSNEDDQGAPSTLPWWEYWP*

Protein Length: 324

Fln nts: ATGGGATCCTCAGGTTTTTAATGGTGGTATTTGTACTGGTTACAGTTGTTTTCTGTACAGTGTAACATGGATATCTGATGTTCGCCACAGTGATTCTTATGGATCATACATATATATATTTCAATCAGGTCTGATATATAGTTGTGGGAATCATATCTAATACTGAAAGCATTTGCTTTCTGCTGCTGCTGTGATCTATTCCTATGTTCTGTATACGAATAGGATAGATTACCTTTACTCATATGAAGCCTCTGCTGCTGCTAGTTAGTGTGTTTATGTTTCAGTATATATCTTATTCTGGTCATGCCGAGTGTTTTATGCTGTGGATATGGTCTGGGAATTAAGAGTAACCGAGGCTCAAGAGGCCGAAGCTCTTAGAATCTTGATATTTTAATGTTTATCTTTTTAACGTCCTTTGAGACTTGACTTGGCCTTGGCTGGATTGGCGGATCATGTGTGAAGAAGATTTTGTTATTATAAATCAAGTTTTTTTATACATGATCATGCCAACAGCAAATTGTAATGAGTCATGGTCCTAACGGTGGCTATTCTTACAGTTTGTAGGAGCCAGCCATCCTTCTTGTAGACTTTGAGGCAGCAGTCTTGTTGTTCCTGCTATTAAGGGATATGGCTATGAGCTAATTAAAATTGAGGGCAACAATGGAAACGAATCTCTTAACGCAGCACAATCAGGTTGACATGATGCTGAAGAGGACTATGATGGTGGTTATTGAGTGTTGATTAAATAACAGACCCCCCAACAATAGAAACAGAACATCAGTTGGATGCTGGTTATAATTGAGACAGTTGGGTTATGACTGTAAAACTGAAGACATTGGATGGCAATGGATTTGAGTCAGAATGGCTGCATGACAGTGGTTATACTTTGATTTAGCTGGGGTTGTGGTGATGGATATATGGCAGCCGTGGTTATGGATTTTCATGGGAGTGGCTGTTTGATCAATATATGGCAGTTTCTACTTATGTGGATGAATATTTCACAAAGGGGAATGCCTATATGGAAGTAGTTTTATAACCATGGTTATGGACTTAAGTTTGATCAATTGTATGAAAGTGTGTACATGGCTCTAGTTAAGGGCACGAAGATAGGAAGCTCTGGATATGGACTTCAGCTTGGTGGCTGTATGACACTGGGTGCCTTTATATGCTTAAGGATTTGAGTTGGGTTCATTGATTTCATTTTGTTGCAGATAATTTGAGAAGCAATCCGGGG_-_ATGAATCTAAACGATCATACTTACAATTTATCACCTATGGCTAATTCAGGAAATCCGGAAGAGCAGATTGATGAGGATGCAGTGGATGACTTTATGAACTACCAACCCGAGTCTAAAAAGAGAAGACTTACAGTAGAACAGGTGAGGTCTTTAGAGAGGAGTTTCGAAATCGAGACCAAGCTGGAACCAGAGAAAAAGATACAGTTGGCTCAAGAGCTTGGACTTCAACCCCGTCAAGTAGCTATTTGGTTCCAGAACAGAAGGGCGAGATGGAAGACCAAGCAGCTTGAGAGAGATTACAGCGTTCTCAAAGCTAGTTATGATGCTTTAAAATCTGATTTTGAGAGATTGCAGCAGGAAAACAAAAATATCCGTGCCGAGCTGGAGAGTTTAAAAGAGAAGCTGGAAGAAGCAGATTGCTGCAAAGAGGACAACCACAGTGACATGGCAACATCAACGAAGGTAACAAGCACCATTGAAAATAGCAAGAAACTTGCAGCAGATGTTGCAGGCGAGGAAAATGATATTGACATCAAGCCTTTCAGTGATATTACACTGCTCTTCAAGGAGAAAGATATGGGTTTGGAGAAGATGGATATTAAGCCGTTCAGAGTAATGTTATTGAATGAGAAAGAGGGATCTTTTAGCCCTGGCAGTGACTGTAGTGCCAATACAAGGAATGAAGACAAGAATCCCCCACATCAAATCCTTAGTCATCTTGCACAGGCTTCTTCATCTATGAAATACCCGTCTGGTACTAATAATATAGCTGGTATGGATAACATCAATGACCAAGGTCTTATGCATCTGGCTGAGGCACTTTGTGGCATGGGCCTTCCTCCAAAAGCATATCAGCAACTTTTCAGAGTAGATGAAGGATATCTTCATGAAGATGCTTGCAACCACTTTTCCAATGAAGATGACCAAGGTGCTCCAAGTACTCTGCCATGGTGGGAGTACTGGCCTTGA___GCCTTGCTCAGTAGTAGTAAATTATCTTGCCCTCGCAATAGATATATGGCAGAAAGGAAAAATTAACCTTATGGCCAAATTAATATTCTGTTGGTGAGATGGATGATTGTAAATTCTTATGGCTTGCAACCAAGTCTGCTTAAAGATTGTAAAAGAAGCAGATTCCTGCAATATTAAGTTACTGTAAATTTCAGTATGCATTAAATGTATATTGCTGGCTATGTCCTCAGGGGATTGCAGTGGTGGTGGGGGAAGAGGAGAAATAGTAAAAGAGAAACGCTGCTAAGTCACAAATTTAGGCTGAACATAAATTGGTCCTTTTGGGACCTCTGCGAGACAGCTTCTATCTTGGCACATCTTCAAACTAAACAGTTTTGGAGGATAATCTGCAGTCTGGATTGGATTATAGATTGACTACTAAATTCGGAGTATTGCATGTACAGAGAAGGAGAAAGTCATGGGAAAAAGGGCCTTCCTTTACGCATGCCATGTACTCTCCATGATAAGTTTATGCAAGCTTTATTATAAATCTATATTGTTCAATTTAAAGGAGGGTGAAATGATGAAAATCTCATAAACATGCAGGCTAAGCTAAATCAACATAGACAGTGGTTATATACAAGCCTACTGGCAGAAAGCTATACACAAAGTATGGTAATAACCTATTTCATAATCAATATACCCTTCAACTACAATATTTGTTGCACAAAGAATTGATACTGCGAAGGAGAAATGAACGGACCATCTTAGCATATTTAGATTGTTGCTTTATCTGCCTACAAATAGGGTTGAAAAGTTTTGAATGCTCTGATTACCTTAAAGTGTTTGGGACATTGTTTTTAAGATATTCACATACAAGAGTTTAAGATTTGTTCCAAATTCTCGGTTAGTTGTAAAATACAGAAAATACTCAATACC

Fln Alignment:

Contig1020___GMNLNDHTYNLSPMA-NSGNPEEQIDED--AVDDFMNYQPESKKRRLTVEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKASYDALKSDFERLQQENKNIRA
Q00466-2____________GVSDHHHLTQKSPTTTNNMNDQDQVGEEDNLSDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHA

SNPs (tot: 3)

Position	A %	G %	T %	Probability
2576	12	87		0.992554
2753	66		33	0.997452
2818		25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
180	191	CTG CTG CTG CTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain