SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1016

Length: 2637 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1016
CAAGAGATGCGGTTCCCTGACAATAGTTATATATCTTATATATTCCATTTTACATATTGATGTAGTTTTATATCCAACTTGTGGAACAATTGAATATCTGCTGTGTATTTAATTACGGGCAGAAATGATTTAATTAATTGGGAAAAAGGCAAGCTTTAGTGGGTGGCATAAAGCTCGAAACATACACATGCTGTTTGGTCACAGTCCTGCCACAGGGACATAATCTCCAGTCTCTGCATACGAATGTATATTTTCCTGTGGGCTGTAATATTGTTCATCTGGTGTTTATCTCAGTTTCTTTCCACGGTCAAATGCCATTTTCATGTTCAATTATTTTCCAGTGAAGCAAGTGGATTGAGCATGCAAAGAATTATAGGATTAGTTCCATTATCGTTAGCGTTCCCTGTTGGTGCTCAACGCATGCTTCTGTTGGCTCTGGCTCTCCATTCACCTTTTACACTTTCTTATTTGCTAACCTTCTGCTCTAGAATTCTCTCTATTTTTGGGTCTTAAGGGCCATTTTGCTGAAGGCTGACAGTAACTGTAATACGGTTTTGTTCAAGTGAGATTCCATTCTGAAATTATTGCATTGTTTAAAATATAAATTTTGATGTCCAAACGTATATTTTCTCTCGCTTCTGCGTTCGTGCAAAAGTTGGATCAGGGATCAATGACAATGGAGGATTGATTGGTCTGCGAAGATGCCTGAAAACAATATGCTGAGATCAGATTCATCATGAAGAGCCTTGTGAAATGGGCATCGGATATTGGAGATGAAGGAGCGGCAACGGTGGCAGCCTGAAGAAGATGCTTTATTACGTGCTTATGTTAAGCAATACGGGCCAAGGGAATGGAACTTAGTATCACAGCGAATGGGAAAAGCCCTGGACAGAGATGCGAAATCCTGTTTAGAGAGGTGGAAGAACTATCTTAAGCCTGGGATAAAAAAGGGTTCTTTAACAGAAGAGGAGCAATCACTTGTTATAAGTCTTCAAGCAAAATATGGTAACAAGTGGAAGAAAATTGCCGCTGAAGTGCCAGGACGGACAGCAAAGAGATTAGGTAAATGGTGGGAGGTATTCAAAGAAAAGCAGCTGAAGGAGAGGCGCAAAGAAAGGCACAATATAGACAGTGCCAACTCCAGGGAAGGAGGCAAGTATGACCATATTTTGGAAACATTTGCAGAAAAATATGTGCAAAAGAAAATTTGTCCAACCAGCTTACCACCCATTCTGATGCCCTGCCCGTCATCCTCTCCTCTCCTGACCCTCAGTGTTCCAACAGGTAGTACATATGCTGATAACATATGTCTGGCCAATGTAAAAACAACACCATCTGTTTTATCAGGTCCAATTGTTTCCCAGATGGCAAACTTACCTGGATCTATGGGTTTTACTCTGCCTGTCATCAAGGGAAAAATGCCTTCGGCACGTGAAATAGAACCCCGGTTGACCTTAGAAAGCCTTGGTAGTACAAGGCCCATGTTGGAGCCCGAACTTGCTTTGCAATGCAGTTCTTCGGCGATGGATTTAGATTTGACACCAACGTATCTTGGAACTTCGTCTTCTGCTGTTGATGCAACCTCATCCCTTCCTTCATGGATGTCCAATGTACCCACTGCACAAGTGCCTTCCTCAGGTGGTTCTGATGTTAAAACTACGGTGTCTGCATTCATTTTGGAGAAAGATACTCCTTTCTCATCCAAATCAATTCATCTCAACTCATCCCCTTCTGTGAGTCTGTCTCTTTCTCCATCATCAAGTGATCCAGTTGTGTCTAGTGGCTCTGCATCACCTGCCTCTGAAGTTATAGCACCTAGGTCTTGGCTGCAGGATACTATGAGGCATCACGAGATTATCAATGGGGTTGCTGGGGGAGTTGCCAAAGAGAAAAAGGTAAATTTTCCATGGTGTGCATTGGAAAAGCAAGTAGGGACATCATCTTTTGATCCAAATTTGTCTTCTAACAAACAAGCAATGGATAGTCTAATCATGCAGCAACTGCCTACCTTCCTCCAATATTGCAAAGATCTAGAAGAGGGTAGACAGTCATGGTTTATGCACAAGAAGGAAGCTACCTGGAGGCTCAGTCGGCTTGAGCAGCAGCTTGAATCTGAGAAAGCTCGCAAGCGGAGAGAAAAAATTGAAGAGGTAGGTTCAAAAATACGTGCCCTCAGGGAGGAAGAAATAACATATCTTGACAAACTGGAAACTGAGTGCAGGGAGCAGCTTTCTAGTCTCCAAAGGGATGCAGAAATGAAGGAGGCTAAGATGATGGAATTGTGGGCTACCAAACATCTGCAGTTGACAAAATTCGTTGAACAGATGCTTTATCAGTTTCCTGATGCTCAGAGACTCTTCAGCAAGGAAATGCATTGAAAAGTACCTCTTTAGCAAGGAAATGCATTGAAAAATACCTCTTTAGCAAGGAAATGCATTGACAAATGCCCCGAATTTATATAGATTTAAATGGCTTCATTCTTGCCTAGTTATACTGCTGGCTTTCACGCATTTTATTTAACAAGTTTGGATATACTGCAGAAAAACAGCTTTCTGTGAAGACTATTGTATAGCCTGCGTCCTGTCTCATAAATTGCTTTAATTTCTATTATTTTAGTCTCATCTTTTTCCCTGTTCT

Ace file of the UniGene sp_v2.0_unigene1016 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phantastica-like MYB protein [Eschscholzia californica subsp. californica]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	asymmetric leaves1 and rough	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	84%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABT4

Fln msg: your sequence is longer than subject: 535 - 382

Fln protein: MKERQRWQPEEDALLRAYVKQYGPREWNLVSQRMGKALDRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVISLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLKERRKERHNIDSANSREGGKYDHILETFAEKYVQKKICPTSLPPILMPCPSSSPLLTLSVPTGSTYADNICLANVKTTPSVLSGPIVSQMANLPGSMGFTLPVIKGKMPSAREIEPRLTLESLGSTRPMLEPELALQCSSSAMDLDLTPTYLGTSSSAVDATSSLPSWMSNVPTAQVPSSGGSDVKTTVSAFILEKDTPFSSKSIHLNSSPSVSLSLSPSSSDPVVSSGSASPASEVIAPRSWLQDTMRHHEIINGVAGGVAKEKKVNFPWCALEKQVGTSSFDPNLSSNKQAMDSLIMQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLESEKARKRREKIEEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWATKHLQLTKFVEQMLYQFPDAQRLFSKEMH*

Protein Length: 536

Fln nts: CAAGAGATGCGGTTCCCTGACAATAGTTATATATCTTATATATTCCATTTTACATATTGATGTAGTTTTATATCCAACTTGTGGAACAATTGAATATCTGCTGTGTATTTAATTACGGGCAGAAATGATTTAATTAATTGGGAAAAAGGCAAGCTTTAGTGGGTGGCATAAAGCTCGAAACATACACATGCTGTTTGGTCACAGTCCTGCCACAGGGACATAATCTCCAGTCTCTGCATACGAATGTATATTTTCCTGTGGGCTGTAATATTGTTCATCTGGTGTTTATCTCAGTTTCTTTCCACGGTCAAATGCCATTTTCATGTTCAATTATTTTCCAGTGAAGCAAGTGGATTGAGCATGCAAAGAATTATAGGATTAGTTCCATTATCGTTAGCGTTCCCTGTTGGTGCTCAACGCATGCTTCTGTTGGCTCTGGCTCTCCATTCACCTTTTACACTTTCTTATTTGCTAACCTTCTGCTCTAGAATTCTCTCTATTTTTGGGTCTTAAGGGCCATTTTGCTGAAGGCTGACAGTAACTGTAATACGGTTTTGTTCAAGTGAGATTCCATTCTGAAATTATTGCATTGTTTAAAATATAAATTTTGATGTCCAAACGTATATTTTCTCTCGCTTCTGCGTTCGTGCAAAAGTTGGATCAGGGATCAATGACAATGGAGGATTGATTGGTCTGCGAAGATGCCTGAAAACAATATGCTGAGATCAGATTCATCATGAAGAGCCTTGTGAAATGGGCATCGGATATTGGAG_-_ATGAAGGAGCGGCAACGGTGGCAGCCTGAAGAAGATGCTTTATTACGTGCTTATGTTAAGCAATACGGGCCAAGGGAATGGAACTTAGTATCACAGCGAATGGGAAAAGCCCTGGACAGAGATGCGAAATCCTGTTTAGAGAGGTGGAAGAACTATCTTAAGCCTGGGATAAAAAAGGGTTCTTTAACAGAAGAGGAGCAATCACTTGTTATAAGTCTTCAAGCAAAATATGGTAACAAGTGGAAGAAAATTGCCGCTGAAGTGCCAGGACGGACAGCAAAGAGATTAGGTAAATGGTGGGAGGTATTCAAAGAAAAGCAGCTGAAGGAGAGGCGCAAAGAAAGGCACAATATAGACAGTGCCAACTCCAGGGAAGGAGGCAAGTATGACCATATTTTGGAAACATTTGCAGAAAAATATGTGCAAAAGAAAATTTGTCCAACCAGCTTACCACCCATTCTGATGCCCTGCCCGTCATCCTCTCCTCTCCTGACCCTCAGTGTTCCAACAGGTAGTACATATGCTGATAACATATGTCTGGCCAATGTAAAAACAACACCATCTGTTTTATCAGGTCCAATTGTTTCCCAGATGGCAAACTTACCTGGATCTATGGGTTTTACTCTGCCTGTCATCAAGGGAAAAATGCCTTCGGCACGTGAAATAGAACCCCGGTTGACCTTAGAAAGCCTTGGTAGTACAAGGCCCATGTTGGAGCCCGAACTTGCTTTGCAATGCAGTTCTTCGGCGATGGATTTAGATTTGACACCAACGTATCTTGGAACTTCGTCTTCTGCTGTTGATGCAACCTCATCCCTTCCTTCATGGATGTCCAATGTACCCACTGCACAAGTGCCTTCCTCAGGTGGTTCTGATGTTAAAACTACGGTGTCTGCATTCATTTTGGAGAAAGATACTCCTTTCTCATCCAAATCAATTCATCTCAACTCATCCCCTTCTGTGAGTCTGTCTCTTTCTCCATCATCAAGTGATCCAGTTGTGTCTAGTGGCTCTGCATCACCTGCCTCTGAAGTTATAGCACCTAGGTCTTGGCTGCAGGATACTATGAGGCATCACGAGATTATCAATGGGGTTGCTGGGGGAGTTGCCAAAGAGAAAAAGGTAAATTTTCCATGGTGTGCATTGGAAAAGCAAGTAGGGACATCATCTTTTGATCCAAATTTGTCTTCTAACAAACAAGCAATGGATAGTCTAATCATGCAGCAACTGCCTACCTTCCTCCAATATTGCAAAGATCTAGAAGAGGGTAGACAGTCATGGTTTATGCACAAGAAGGAAGCTACCTGGAGGCTCAGTCGGCTTGAGCAGCAGCTTGAATCTGAGAAAGCTCGCAAGCGGAGAGAAAAAATTGAAGAGGTAGGTTCAAAAATACGTGCCCTCAGGGAGGAAGAAATAACATATCTTGACAAACTGGAAACTGAGTGCAGGGAGCAGCTTTCTAGTCTCCAAAGGGATGCAGAAATGAAGGAGGCTAAGATGATGGAATTGTGGGCTACCAAACATCTGCAGTTGACAAAATTCGTTGAACAGATGCTTTATCAGTTTCCTGATGCTCAGAGACTCTTCAGCAAGGAAATGCATTGA___AAAGTACCTCTTTAGCAAGGAAATGCATTGAAAAATACCTCTTTAGCAAGGAAATGCATTGACAAATGCCCCGAATTTATATAGATTTAAATGGCTTCATTCTTGCCTAGTTATACTGCTGGCTTTCACGCATTTTATTTAACAAGTTTGGATATACTGCAGAAAAACAGCTTTCTGTGAAGACTATTGTATAGCCTGCGTCCTGTCTCATAAATTGCTTTAATTTCTATTATTTTAGTCTCATCTTTTTCCCTGTTCT

Fln Alignment:

Contig1016___YADNICLANVKTTPSVLSGPIVSQMANLPGSMGFTLPVIKGKMPSAREIEPRLTLESLGSTRPMLEPELALQCSSSAMDLDLTPTYLGTSSSAVDATSSLPSWMSNVPTA--QVPSSGGSDVKTTVSAFILEKDTPFSSKSIHLNXXXXXXXXXXXXXXXXXXXXXXXXXXSEVIAPRSWLQDTMRHHEIINGVAGGVAKEKKVNFPWCALEKQVGTSSFDPNLSSNKQAMDSLIMQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLXXXXXXXXXXXXXEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWATKHLQLTKFVEQMLYQFPDAQRLFSKEMH
D5ABT4______________YADNICLANVKTTPSVSTGPIVSQMANLHGSMGLTLPVIKGKMPSAREIEPRLTLESLGSTRSMLEPELALQCNASAMDLELTPTYLGTSSSAVDAASSLPPWMSNVPTAHAQVHASGGSDVKTMASTFILEKDTPFSSKSIHINSSPSVSLSLSPSSSDPVVSSGSASPASEVIAPRSWLQDTMRHQESINGVAGGIAKEGKVNLPWCALEKQVGTSSFDPNLASSKQAMDNLIMQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLESEKARKRREKIEEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWAAKHLQLTKFVEQMLYQFPDAQRLFSKEMH

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
751	20			80	0.995493
753	20			80	0.995493
754	20			80	0.995493
757	40		60		1.0
761		75		25	0.996473
993		20		80	0.995493
996			80	20	0.995493
1098	16		83		0.994512
1099	16		83		0.994512
1133	16			83	0.994512
1528		75		25	0.996473
1626	10	90			0.90298
1628		90	10		0.90298
1679		11		88	0.923564
1680		22	77		0.999999
1681	11	11		77	0.968132
1682		11		88	0.923564
1684	87			12	0.992554
1689		83		16	0.994512
1690		83		16	0.994512
1786	14			85	0.993533
1787	14	85			0.993533
1788		85		14	0.993533
1789	85		14		0.993533
1792		87	12		0.992554
1794		87	12		0.992554
1795	12			87	0.992554
1796	12			87	0.992554
1945	12	87			0.992554
1947			87	12	0.992554
1948	87		12		0.992554
1949		87		12	0.992554
2030	16			83	0.994512
2033	85			14	0.993533
2034	83			16	0.994512
2185	85		14		0.993533
2187	85		14		0.993533
2189	14		71	14	0.984337
2191	28			71	1.0
2192		28	71		1.0
2194	71		14	14	0.984337
2195		14		85	0.993533
2196		16	83		0.994512
2197	16		83		0.994512
2202		83		16	0.994512
2243	20		80		0.995493
2244		80		20	0.995493
2267	75	25			0.996473
2268		25		75	0.996473
2269	75	25			0.996473
2272		50		50	1.0
2448	71	28			1.0
2449	66	33			1.0
2452			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain