SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene986

Length: 1110 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene986

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref\|NP_974396.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb\|CAB61981.1\| putative protein [Arabidopsis thaliana] dbj\|BAE98651.1\| hypothetical protein [Arabidop	-	-	1.0e-29	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	membrane associated ring finger	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 222 - 279

Fln protein: LKYA*YYF*T*YTVLLELALDFWFACNHFASSSNFEGDP*NAH*EDYVGIALTKKCTFVILKLQTYKHGYTAPQRPHSGGIVIDISGNWGSQLDLDDPRVIAMAAAEHRLLEAEYDEYTAGNSSGAACCRSAALIFMALLLLRHALAIASAGGDEDVSTFFTLLLRTAGFLLPCYIMARAMNIIQNRRQRQEAVMTAAEVAFLMQARRARGLRFAGVASAS*

Protein Length: 223

Fln nts: TTAAAGTATGCCTGATATTACTTTTAAACTTGATATACTGTTCTTTTAGAACTTGCTCTAGACTTTTGGTTTGCATGTAACCATTTTGCTTCCTCATCTAATTTTGAAGGGGACCCTTAAAATGCGCACTGAGAGGACTATGTTGGTATAGCGTTAACTAAGAAATGTACATTTGTTATTCTGAAACTACAGACTTACAAACATGGGTATACAGCACCTCAGCGTCCTCATTCTGGTGGCATTGTCATTGATATCAGTGGAAACTGGGGATCTCAGTTGGACCTGGATGATCCTCGTGTGATAGCTATGGCTGCAGCAGAACACCGCCTTCTGGAAGCTGAATATGATGAATACACAGCAGGCAATTCAAGTGGTGCTGCATGTTGCCGGTCTGCAGCTTTAATTTTCATGGCCCTTTTACTTCTACGTCACGCCCTAGCCATAGCTAGTGCTGGAGGAGATGAGGATGTTTCAACATTCTTCACGCTCCTCTTAAGAACTGCTGGATTCCTTTTGCCATGCTACATTATGGCACGGGCAATGAATATTATACAGAATCGAAGACAGAGACAGGAGGCAGTAATGACAGCAGCTGAAGTGGCTTTTCTTATGCAAGCACGTCGGGCTCGAGGGTTGAGATTTGCAGGAGTTGCATCAGCTTCTTGA___GCCTCACCTGGTCATTAATGGCTTAAAGTGTGAAAAACCTGGGGCGGCTATCCTTAAGGAATTTGGTTTCGAATAATGTTTGTCTTTTGCAAGAATAATGTCCAGCTTGGCTCTGATAAGTTTGCGAATTCTGGAGCCATGGATAAAAGATGCAGATCTTTCTTTTGTTAAACCTATCAATACATGTATCATTGGGGATCTAAATTTAAAGGTCCCTATGAATAGGAAGAGAGTTGCCATTGCAGGTCTAGTTGGGAAAGCATAAATGAGTGTTCATTCCCGTTAGTGAAGAGTTGACTCAATGTAAAGGTCACCATGAAAGTAAAAGGAAAAGCTAAGGATGTATTTCTTTGTATATATCAGCTGAGAAGCTATTTTCCCAACTCTTTTGTGAGCAGTTGTTTGTTTTCTGTTATTAATCAATATGCCTAACCGCTTTAAAAC

Fln Alignment:

Contig986___QTYKHGYTAPQRPHSGGIVIDISGNWGSQLDLDDPRVIAMAAAEHRLLEAEYDEYTAGNSSGAACCRSXXXXXXXXXXXXXXXXXXXXGGDEDVSTFFTLLLRTAGFLLPCYIMARAMNIIQNRRQRQEAVMTAAEVAFLMQARRARGLRFAG
B8LQD2_____________QTYKPGYTAPLRPLSGGIAIDISGNWGSQLDLNDPRLLAMAAAERHFLEAEYDEYTAANSSGSACCRSAALIFMALLLLRHALAIASAGGDEDVSTFFTLLLRTAGFLLPCYIMARAMNILQHRRQRQEAAMTAAEVAFLLQARRARGLRFAG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
594		88		11	0.923564
635		25		75	1.0
682			12	87	0.992554
980	71	28			1.0
1009			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain