SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene984

Length: 2318 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene984
TTTGGGTGAGGGTAATGGAGGTCGTGTAGGGCGCAGACATTTGAGTTCAATACCAGCATCTACAGTTTGTGACTTGGCAACATCAGCTGCTATCCTCTCAAGTGAGATAGCAAGTGGAGTATCGGTTGGGGATGACTCACTCATTTATGATTCAATCCTCTCCAGTGGAGTGCAGATAGGTTCCAGATGTGTGGTTGTAGGAGTTCATATAGATCAGGAAAGAAGAGTATATAATGAAAATGGTCCTTTCCTTGTACTCCCTGATCGTCACTGTCTTTGGGAAGTTCCTTTGGTGGGTGATACAGGAAGGGTTATTCTTTGTTGTGGCATTGAGGATAATCCAAAATCTTCAATTTACAGGGGTGGCACTTTTTGTGGGAAACCATGGGAAAAAGTTTTCTCCAAACTGGGTATTCGAGAAAGTAATTTATGGAATCACGAACAAAAGCAGAGGTATTTATGGAATGCAAAGCTTTTCCCTGTTGTGCCACAGGCTGAAGGCCTCAAACTAGCTATGTGGCTCATGGGATTTAACTTGGATCAGAATGAAGACATGTTACATTTATGGGAAAATTCTCAGAGGGTCAGCTTAGAAGAAATGCACCGTAGTATAGATTATCGACAGCTTTGTGCAGAATCTAGTAATCATCGGTCAAAGCTTGCAGCTGGGATTGCTAAAGCTTGCATTAGCTATGGGTTGCTTGGTCGCAATTTGTCCAGACTTTGTGCGGAGATTCTCGAGGGAGAGAAGAATGGAATTGATATTTGCAAAAGCTATCTTTCTTTGTGTCCCAATCCTCAGACTAGCAATTTGAGTTTACTGAATTTACCAAAGAGCAGAGCATATCAAGCCCAGGTTGACCTCCATAGAGCTTGCAAGCAAGAACAAAGTGCAAATGTAATGGAGGAAAGTGTATGGGCAGCAGTAGCTGCTGAAACTGCTGCAGCTGTAAGACAGGATCTTGAAGATCAGGCATCAAAGTGTCTTAATGGTGTAGCTACACAAATATGTGATGGATATGAACATCATCACATTGCTAATAGTCAACCACTCCAGCCAAAAAGAGCACATGTTGAATTACCAGTTCGCGTGGATTTTGTCGGTGGCTGGAGTGATACTCCACCATGGAGCCTGGAGAGAAGTGGGTGTGTTTTGAATATGGCAATACATTTGGAGGGAACTCTTCCAGTAGGGGCAGAAATAGTTGTGAGATCAATAGAGGGAATTTTAATACGTGATGATGCAGGAAATCAGGTGCATATTCAGGATTTCAGGTCCATTGCTCCTCCATTTCATGAGGATGATCAATTTCGCTTGGTCAAAGCTGCACTCACTGTGACTGGCATCATCAATCCATCTGACAAAATCATGTCATCAACAGGCCTTGAAATAAGCACATGGGCTAAGGTTCCACGTGGTAGCGGATTGGGGACATCAAGTATCTTGGCAGCTGCTGTTATAAAGGGACTGCAACATGTAATAGGTGGAGATGAGAGTAATGAAAATGTTGCAAGGCTTGTTTTGGTCTTAGAGCAGTTGATGGGCACAGGTGGAGGTTGGCAAGATCAGATTGGGGGTCTTTATCCTGGCATCAAATGTACAACTAGCTTACCTGGCAAACCATTACGGCTCAATATAGAAACTGTTTCAGTAAGTTCTCAATTAGTCTTGGAGCTAGAACAACGCATGCTGGTAGTCTTCACTGGGCAAGTCCGCCTTGCTCATGGAGTGCTGCAGAAAGTTGTAGTTCGATATCTCCAACGTGATGCCCTCTTGATAACAAGTATCAAGCGCCTAGCAAAGCTTGCCAAAATTGGACGGGAATGTTTGATGAGTGGCAATTTGGATGATTTGGGTAGAATCATGCTTGAAGCATGGAGGCTACATCAAGAGCTTGATCCTTATTGTAGTAATACATTTGTGGATAAGCTTTTTGAATATTCTGACCCCTTCTGTTGTGGTTATAAGCTTATTGGAGCAGGTGGAGGTGGTTTTGCATTACTACTAGCTAGAAATAGAGAAGCTGCAGATGATTTAAAAAACTTGTTGAAAGCGTCTGGGTTTCCTATAAAAATATACAGCTGGAGTATGTGCTCAGATAGGATTTCAGGTCTTTCTTAGAAGTTGCAAAGCATGTTTTCATTGTCATATATATTATCTATTATTCCTATGTTGGAGATATGAATGGTGCTTCAATTATTTTCTAGCCTTACTTCCTCTTATAATTCTTTGTGCACTAGGTTTTAAGCAATTCTTTTCTGGATTGTAATATATTTGCTACTATTACTAGTTTGGCATTCAAATCAACGACAATAAC

Ace file of the UniGene sp_v2.0_unigene984

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBD4_RICCO	-	-	55%
FL-Next	sp=Bifunctional fucokinase/fucose pyrophosphorylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	bifunctional fucokinase fucose pyrophosphorylase-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fucokinase.	EC:2.7.1.52	-	0.0	74%

Source	KEGGs	Term	Type	Identity
Blast2go	Fructose and mannose metabolism	00051		74%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		74%
Blast2go	Metabolic pathways	01100		74%
Blast2go		EC:2.7.7.3-	-	74%
Blast2go	Galactokinase.	EC:2.7.1.6	-	74%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	74%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	GDP-L-fucose salvage	GO:0042352	Biological Process	74%
Blast2go	phosphorylation	GO:0016310	Biological Process	74%
Blast2go	fucokinase activity	GO:0050201	Molecular Function	74%
Blast2go	fucose-1-phosphate guanylyltransferase activity	GO:0047341	Molecular Function	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	galactokinase activity	GO:0004335	Molecular Function	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Galactokinase/homoserine kinase	IPR001174	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	L-fucokinase	IPR012887	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LNJ9

Fln msg: your sequence is shorter than subject: 707 - 1055

Fln protein: LGEGNGGRVGRRHLSSIPASTVCDLATSAAILSSEIASGVSVGDDSLIYDSILSSGVQIGSRCVVVGVHIDQERRVYNENGPFLVLPDRHCLWEVPLVGDTGRVILCCGIEDNPKSSIYRGGTFCGKPWEKVFSKLGIRESNLWNHEQKQRYLWNAKLFPVVPQAEGLKLAMWLMGFNLDQNEDMLHLWENSQRVSLEEMHRSIDYRQLCAESSNHRSKLAAGIAKACISYGLLGRNLSRLCAEILEGEKNGIDICKSYLSLCPNPQTSNLSLLNLPKSRAYQAQVDLHRACKQEQSANVMEESVWAAVAAETAAAVRQDLEDQASKCLNGVATQICDGYEHHHIANSQPLQPKRAHVELPVRVDFVGGWSDTPPWSLERSGCVLNMAIHLEGTLPVGAEIVVRSIEGILIRDDAGNQVHIQDFRSIAPPFHEDDQFRLVKAALTVTGIINPSDKIMSSTGLEISTWAKVPRGSGLGTSSILAAAVIKGLQHVIGGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKCTTSLPGKPLRLNIETVSVSSQLVLELEQRMLVVFTGQVRLAHGVLQKVVVRYLQRDALLITSIKRLAKLAKIGRECLMSGNLDDLGRIMLEAWRLHQELDPYCSNTFVDKLFEYSDPFCCGYKLIGAGGGGFALLLARNREAADDLKNLLKASGFPIKIYSWSMCSDRISGLS*

Protein Length: 708

Fln nts: TTTGGGTGAGGGTAATGGAGGTCGTGTAGGGCGCAGACATTTGAGTTCAATACCAGCATCTACAGTTTGTGACTTGGCAACATCAGCTGCTATCCTCTCAAGTGAGATAGCAAGTGGAGTATCGGTTGGGGATGACTCACTCATTTATGATTCAATCCTCTCCAGTGGAGTGCAGATAGGTTCCAGATGTGTGGTTGTAGGAGTTCATATAGATCAGGAAAGAAGAGTATATAATGAAAATGGTCCTTTCCTTGTACTCCCTGATCGTCACTGTCTTTGGGAAGTTCCTTTGGTGGGTGATACAGGAAGGGTTATTCTTTGTTGTGGCATTGAGGATAATCCAAAATCTTCAATTTACAGGGGTGGCACTTTTTGTGGGAAACCATGGGAAAAAGTTTTCTCCAAACTGGGTATTCGAGAAAGTAATTTATGGAATCACGAACAAAAGCAGAGGTATTTATGGAATGCAAAGCTTTTCCCTGTTGTGCCACAGGCTGAAGGCCTCAAACTAGCTATGTGGCTCATGGGATTTAACTTGGATCAGAATGAAGACATGTTACATTTATGGGAAAATTCTCAGAGGGTCAGCTTAGAAGAAATGCACCGTAGTATAGATTATCGACAGCTTTGTGCAGAATCTAGTAATCATCGGTCAAAGCTTGCAGCTGGGATTGCTAAAGCTTGCATTAGCTATGGGTTGCTTGGTCGCAATTTGTCCAGACTTTGTGCGGAGATTCTCGAGGGAGAGAAGAATGGAATTGATATTTGCAAAAGCTATCTTTCTTTGTGTCCCAATCCTCAGACTAGCAATTTGAGTTTACTGAATTTACCAAAGAGCAGAGCATATCAAGCCCAGGTTGACCTCCATAGAGCTTGCAAGCAAGAACAAAGTGCAAATGTAATGGAGGAAAGTGTATGGGCAGCAGTAGCTGCTGAAACTGCTGCAGCTGTAAGACAGGATCTTGAAGATCAGGCATCAAAGTGTCTTAATGGTGTAGCTACACAAATATGTGATGGATATGAACATCATCACATTGCTAATAGTCAACCACTCCAGCCAAAAAGAGCACATGTTGAATTACCAGTTCGCGTGGATTTTGTCGGTGGCTGGAGTGATACTCCACCATGGAGCCTGGAGAGAAGTGGGTGTGTTTTGAATATGGCAATACATTTGGAGGGAACTCTTCCAGTAGGGGCAGAAATAGTTGTGAGATCAATAGAGGGAATTTTAATACGTGATGATGCAGGAAATCAGGTGCATATTCAGGATTTCAGGTCCATTGCTCCTCCATTTCATGAGGATGATCAATTTCGCTTGGTCAAAGCTGCACTCACTGTGACTGGCATCATCAATCCATCTGACAAAATCATGTCATCAACAGGCCTTGAAATAAGCACATGGGCTAAGGTTCCACGTGGTAGCGGATTGGGGACATCAAGTATCTTGGCAGCTGCTGTTATAAAGGGACTGCAACATGTAATAGGTGGAGATGAGAGTAATGAAAATGTTGCAAGGCTTGTTTTGGTCTTAGAGCAGTTGATGGGCACAGGTGGAGGTTGGCAAGATCAGATTGGGGGTCTTTATCCTGGCATCAAATGTACAACTAGCTTACCTGGCAAACCATTACGGCTCAATATAGAAACTGTTTCAGTAAGTTCTCAATTAGTCTTGGAGCTAGAACAACGCATGCTGGTAGTCTTCACTGGGCAAGTCCGCCTTGCTCATGGAGTGCTGCAGAAAGTTGTAGTTCGATATCTCCAACGTGATGCCCTCTTGATAACAAGTATCAAGCGCCTAGCAAAGCTTGCCAAAATTGGACGGGAATGTTTGATGAGTGGCAATTTGGATGATTTGGGTAGAATCATGCTTGAAGCATGGAGGCTACATCAAGAGCTTGATCCTTATTGTAGTAATACATTTGTGGATAAGCTTTTTGAATATTCTGACCCCTTCTGTTGTGGTTATAAGCTTATTGGAGCAGGTGGAGGTGGTTTTGCATTACTACTAGCTAGAAATAGAGAAGCTGCAGATGATTTAAAAAACTTGTTGAAAGCGTCTGGGTTTCCTATAAAAATATACAGCTGGAGTATGTGCTCAGATAGGATTTCAGGTCTTTCTTAG___AAGTTGCAAAGCATGTTTTCATTGTCATATATATTATCTATTATTCCTATGTTGGAGATATGAATGGTGCTTCAATTATTTTCTAGCCTTACTTCCTCTTATAATTCTTTGTGCACTAGGTTTTAAGCAATTCTTTTCTGGATTGTAATATATTTGCTACTATTACTAGTTTGGCATTCAAATCAACGACAATAAC

Fln Alignment:

Contig984___GRVGRRHLSSIPASTVCDLATSAAILSSEIASGVSVGXXXXXXXXXXXXGVQIGSRCVVVGVHIDQERRVYNENGPFLVLPDRHCLWEVPLVGDTGRVILCCGIEDNPKSSIYRGGTFCGKPWEKVFSKLGIRESNLWN-HEQKQRYLWNAKLFPVVPQAEGLKLAMWLMGFNLDQNEDMLHLWENSQRVSLEEMHRSIDYRQLCAESSNHRSKLAAGIAKACISYGLLGRNLSRLCAEILEGEKNGIDICKSYLSLCPNPQTSNLSLLNLPKSRAYQAQVDLHRACKQEQSANVMXXXXXXXXXXXXXXXXRQDLEDQASKCLNGVATQICDGYEHHHIAN--SQP---LQPKRAHVELPVRVDFVGGWSDTPPWSLERSGCVLNMAIHLEGTLPVGAEIVVRSIEGILIRDDAGNQVHIQDFRSIAPPFHEDDQFRLVKAALTVTGIINPSDKIMSSTGLEISTWAKVPRGSGLGTSSILAAAVIKGLQHVIGGDESNENVARLVLVLEQLMXXXXXXXXXXXXLYPGIKCTTSLPGKPLRLNIETVSVSSQLVLELEQRMLVVFTGQVRLAHGVLQKVVVRYLQRDALLITSIKRLAKLAKIGRECLMSGNLDDLGRIMLEAWRLHQELDPYCSNTFVDKLFEYSDPFCCGYKLIXXXXXXXXXXXXRNREAADDLKNLLKA-SGFPIKIYSWSMC
Q9LNJ9_____________GIVGRRHLCSIPATTVSDIAASSVILSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSIVVGIHIPSEDLGTPESFRFM-LPDRHCLWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTFCGKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNKEKIKLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAGGIAKACMNYGMLGRNLSQLCHEILQKESLGLEICKNFLDQCPKFQEQNSKIL--PKSRAYQVEVDLLRACGDEAKAIELEHKVWGAVA-----------EETASAVRYGFREHLLESSGKSHSENHISHPDRVFQPRRTKVELPVRVDFVGGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAGNELHIEDPISIKTPFEVNDPFRLVKSALLVTGIVQ--ENFVDSTGLAIKTWANVPRGSGLGTSSILAAAVVKGLLQISNGDESNENIARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPMRLQVVPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSGREALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSSGFKLVGAGGGGFSLILAKDAEKAKELRQRLEEHAEFDVKVYNWSIC

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1542	33		66		0.997452
1543	66			33	0.997452
1545		66		33	0.997452
1550			75	25	0.996473
1874		85		14	0.993533
1900	90			10	0.90298
1902			90	10	0.90298
1904	10		90		0.90298
1907		10		90	0.90298
1908	10		90		0.90298
2098	14		85		0.993533
2100	85		14		0.993533
2101			14	85	0.993533
2150	16			83	0.999991
2152		83		16	0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain