SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene979

Length: 2033 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene979
ATGGTGGGACTGGGGTACCATGGGTGTGCGAGCATGTTAGTGTATGAAAGTCAAGGGGTTTAAGTATTCTGTGGGATTGCTAGGGAGGACTGGCATGCGCGCGTGCTTATTTTATTTTATGTTTAGCTCAGAGAGGCCATTCATGATTGTGTTAGGTGTGAGAGGGATTCAAGTTCTTGTGACACTTGAATTGCTGCAGCAGGAGACAACAGAAAGAAGAAAAATCTAAGAGCGTTGGGAAAAAAGTTTAGTCATATTTTGTGTCTGCAATTGTTTATTTGGGTCAATATGTGTAGCCCAATAAGGAGACTGTTGTGGGTTTTCCTGTGGGTGTTAGTGGTGTGTAATGTACTGGTGCAAGGTGATAAGAAGATTGGTGAGTATATGAATGACAAAGTAACAGAGCTTCCTGGGCAACCCCAAGTATCTTTTGATCAGTATGCTGGATATATTGTGGTTAACAAGAAGGAAGGCCGAGCTCTGTTCTACTGGTTGACTGAGGCCTCTCATGGTTCCAACTCCAAGCCTCTTGTTCTGTGGCTTAATGGAGGTCCAGGATGCTCATCAATAGCCTATGGAGAATCAGAAGAGATAGGCCCATTTCGATTAAACAAGACAGGCGCTGGTCTGCACTTAAATCCTTTAGCATGGAATAAAGTGGCCAATTTACTTTTTCTGGAGTCTCCCGCTGGAGTGGGATATTCTTATACAAACACCAGCTCAAATTTAAAAGATAGTGGAGACAAACGAACTGCTGAAGATTCACTAGCTTTTCTCATCAACTGGTTTGAAAGGTTTCCTCAGTATAAACACAGAGAATTGTATCTTACTGGCGAGAGCTATGCAGGACATTATGTCCCACAGCTTGCCAAAAAGATATACGACTACAACAAAGGAAAGTCTAAGCCATTTATAAATCTGAGAGGATTCATGGTGGGAAATGCAGTTATGGACAATTATTATGACAACTTGGGGACTGTAACTTACTGGTGGTCACACGCTATGATATCTGACTATACTTATCATAATATTATGAGGCATTGCAATTTTAGAATGCAAGATAATTCAGCTGACTGTGATCATTACATCAACTATGCAATGAATCATGAGTTTGGTGACATAGATCAATATAGTATTTACACTCCTCCTTGTGAAAAGTCTGGGAACAAGACTTTCGTTAGATTCAAGAAATCGCTACTGAGACAGGTATCAGGTTACGACCCTTGCACAGAAAGTTATGCAGAGAAATATTATAATAGACCCGATGTTCAGAGAGCCCTTCATGCCAATACCACAAAGATTCCATACCGATGGACTGGATGCAGCGATGTCCTCATTCGCAATTGGCAGGACGCAGATTTTTCCGTCTTGCCCATTTACAAAGAGCTCATTGCCAATGCCAGCCTTAGAATTTGGGTTTACAGTGGTGATGCTGATTCTGTAGTTCCAGTAACAGCAACCAGATATTCACTGGCTCATCTTCTTCTTCCAGTAAAAATTCCTTGGTACCCATGGTACACCCATAAACAGGTTGGAGGTTGGACGGAGGAATACCAGGGTTTAACATTTGCCACCATAAGGGGGGCTGGCCACGAAGTTCCACTCTTCCGACCCAAAAGCGCCTTCCAGCTTTTCAAATCATTTTTATCAGGAAAAAGCTTGCCTGCAGAACCTAATTAATCAAGCTGGTTATGAATTCTTTCAACATTCTACAAATATACCATATCAATTCTCTTATTGGTAGATTGAGACACTGCAATTCTTTTCATTATGGTTTTAGCCAGCTGTGATTGTCAGAATTGACAGCATAAATTATATAGGTGTCACACCGTTTGTTTCATATAGGGTAATTAAAGGAAATTCAAGCGAGTATTGCACCAAAAATAGGAGAGGCAATTGCAATTTGCAACTTGTAAGCAATTATATAGAAAGCTGAAGAAGTTTTTCTGTTATTTGCATTAGTTTGTTCTGATATTTGCAGAACGTGAACGTCTGGATCATCAGACTTATTCAATGCAATGCAATGAAGATTG

Ace file of the UniGene sp_v2.0_unigene979

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase 24 n=2 Tax=Arabidopsis RepID=SCP24_ARATH	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	81%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	81%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	81%
Blast2go	extracellular space	GO:0005615	Cellular Component	81%
Blast2go	endomembrane system	GO:0012505	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Lysosome-associated membrane glycoprotein, conserved site	IPR018134	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK48

Fln msg:

Fln protein: MCSPIRRLLWVFLWVLVVCNVLVQGDKKIGEYMNDKVTELPGQPQVSFDQYAGYIVVNKKEGRALFYWLTEASHGSNSKPLVLWLNGGPGCSSIAYGESEEIGPFRLNKTGAGLHLNPLAWNKVANLLFLESPAGVGYSYTNTSSNLKDSGDKRTAEDSLAFLINWFERFPQYKHRELYLTGESYAGHYVPQLAKKIYDYNKGKSKPFINLRGFMVGNAVMDNYYDNLGTVTYWWSHAMISDYTYHNIMRHCNFRMQDNSADCDHYINYAMNHEFGDIDQYSIYTPPCEKSGNKTFVRFKKSLLRQVSGYDPCTESYAEKYYNRPDVQRALHANTTKIPYRWTGCSDVLIRNWQDADFSVLPIYKELIANASLRIWVYSGDADSVVPVTATRYSLAHLLLPVKIPWYPWYTHKQVGGWTEEYQGLTFATIRGAGHEVPLFRPKSAFQLFKSFLSGKSLPAEPN*

Protein Length: 465

Fln nts: ATGGTGGGACTGGGGTACCATGGGTGTGCGAGCATGTTAGTGTATGAAAGTCAAGGGGTTTAAGTATTCTGTGGGATTGCTAGGGAGGACTGGCATGCGCGCGTGCTTATTTTATTTTATGTTTAGCTCAGAGAGGCCATTCATGATTGTGTTAGGTGTGAGAGGGATTCAAGTTCTTGTGACACTTGAATTGCTGCAGCAGGAGACAACAGAAAGAAGAAAAATCTAAGAGCGTTGGGAAAAAAGTTTAGTCATATTTTGTGTCTGCAATTGTTTATTTGGGTCAAT_-_ATGTGTAGCCCAATAAGGAGACTGTTGTGGGTTTTCCTGTGGGTGTTAGTGGTGTGTAATGTACTGGTGCAAGGTGATAAGAAGATTGGTGAGTATATGaATGACAAAGTAACAGAGCTTCCTGGGCAACCCCAAGTATCTTTTGATCAGTATGCTGGATATATTGTGGTTAACAAGAAGGAAGGCCGAGCTCTGTTCTACTGGTTGACTGAGGCCTCTCATGGTTCCAACTCCAAGCCTCTTGTTCTGTGGCTTAATGGAGGTCCAGGATGCTCATCAATAGCCTATGGAGAATCAGAAGAGATAGGCCCATTTCGATTAAACAAGACAGGCGCTGGTCTGCACTTAAATCCTTTAGCATGGAATAAAGTGGCCAATTTACTTTTTCTGGAGTCTCCCGCTGGAGTGGGATATTCTTATACAAACACCAGCTCAAATTTAAAAGATAGTGGAGACAAACGAACTGCTGAAGATTCACTAGCTTTTCTCATCAACTGGTTTGAAAGGTTTCCTCAGTATAAACACAGAGAATTGTATCTTACTGGCGAGAGCTATGCAGGACATTATGTCCCACAGCTTGCCAAAAAGATATACGACTACAACAAAGGAAAGTCTAAGCCATTTATAAATCTGAGAGGATTCATGGTGGGAAATGCAGTTATGGACAATTATTATGACAACTTGGGGACTGTAACTTACTGGTGGTCACACGCTATGATATCTGACTATACTTATCATAATATTATGAGGCATTGCAATTTTAGAATGCAAGATAATTCAGCTGACTGTGATCATTACATCAACTATGCAATGAATCATGAGTTTGGTGACATAGATCAATATAGTATTTACACTCCTCCTTGTGAAAAGTCTGGGAACAAGACTTTCGTTAGATTCAAGAAATCGCTACTGAGACAGGTATCAGGTTACGACCCTTGCACAGAAAGTTATGCAGAGAAATATTATAATAGACCCGATGTTCAGAGAGCCCTTCATGCCAATACCACAAAGATTCCATACCGATGGACTGGATGCAGCGATGTCCTCATTCGCAATTGGCAGGACGCAGATTTTTCCGTCTTGCCCATTTACAAAGAGCTCATTGCCAATGCCAGCCTTAGAATTTGGGTTTACAGTGGTGATGCTGATTCTGTAGTTCCAGTAACAGCAACCAGATATTCACTGGCTCATCTTCTTCTTCCAGTAAAAATTCCTTGGTACCCATGGTACACCCATAAACAGGTTGGAGGTTGGACGGAGGAATACCAGGGTTTAACATTTGCCACCATAAGGGGGGCTGGCCACGAAGTTCCACTCTTCCGACCCAAAAGCGCCTTCCAGCTTTTCAAATCATTTTTATCAGGAAAAAGCTTGCCTGCAGAACCTAATTAA___TCAAGCTGGTTATGAATTCTTTCAACATTCTACAAATATACCATATCAATTCTCTTATTGGTAGATTGAGACACTGCAATTCTTTTCATTATGGTTTTAGCCAGCTGTGATTGTCAGAATTGACAGCATAAATTATATAGGTGTCACACCGTTTGTTTCATATAGGGTAATTAAAGGAAATTCAAGCGAGTATTGCACCAAAAATAGGAGAGGCAATTGCAATTTGCAACTTGTAAGCAATTATATAGAAAGCTGAAGAAGTTTTTCTGTTATTTGCATTAGTTTGTTCTGATATTTGCAGAACGTGAACGTCTGGATCATCAGACTTATTCAATGCAATGCAATGAAGATTG

Fln Alignment:

Contig979___GDKKIG--EYMNDKVTELPGQPQVSFDQYAGYIVVNKKEGRALFYWLTEASHGSNSKPLVLWLNGGPGCSSIAYGESEEIGPFRLNKTGAGLHLNPLAWNKVANLLFLESPAGVGYSYTNTSSNLKDSGDKRTAEDSLAFLINWFERFPQYKHRELYLTGESYAGHYVPQLAKKIYDYNKGKSK-PFINLRGFMVGNAVMDNYYDNLGTVTYWWSHAMISDYTYHNIMRHCNFRMQDNSADCDHYINYAMNHEFGDIDQYSIYTPPCEKSGNK------TFVRFKKSLLRQV-----SGYDPCTESYAEKYYNRPDVQRALHANTTKIPYRWTGCSDVLIRNWQDADFSVLPIYKELIANASLRIWVYSGDADSVVPVTATRYSLAHLLLPVKIPWYPWYTHKQVGGWTEEYQGLTFATIRGAGHEVPLFRPKSAFQLFKSFLSGKSLP
B8LK48_____________GDHKDGLTAQQADRVYNLPGQPKASFAHYAGYITVNESHGRALFYWFFEAEDKSSKKPLVLWLNGGPGCSSVGYGAAQELGPFQVKTNGTGLSLNTYSWNKEANLLFLESPVGVGFSYTNTSSDLLELNDQFTAEDSYEFLLRWFKRFPQYKTHDFYIGGESYAGHYVPQLAELVYDRSQNKSKYPSINFKGFIVGNPETDEFHDWQGIVDYAWTHAIISDQKYNLIKSICNFKLFNWTDDCTQAVS-SVFADYSEIDIYNIYAPRCLENSNSGVRTRDKLTDSKNKVSRRTLGFLYGGYDPCFEVYTNEYFNRPDVQEALHANVTKIPFKWGACNNSVFETYIDTVFSILPIYTKLI-KGGLRIWVYSGDIDGRVPVTATKYTINALHLPIKQQWHPWFHDRQVAGWFIQYQGLTHLTFRGAGHLVPLNKPSQALSMIEAYLQNKDLP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1702	25			75	0.996473
1703	20	80			0.995493
1704	40			60	1.0
1706			20	80	0.995493
1707		75		25	0.996473
1771		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2012	2026	CAATG CAATG CAATG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain