SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene978

Length: 1431 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene978

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonol synthase n=2 Tax=Ginkgo biloba RepID=D0UZK7_GINBI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	flavonol synthase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Flavonol synthase.	EC:1.14.11.23	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Flavonoid biosynthesis	00941	73%
Blast2go	Biosynthesis of phenylpropanoids	01061	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	flavonol biosynthetic process	GO:0051555	Biological Process	73%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	73%
Blast2go	flavonol synthase activity	GO:0045431	Molecular Function	73%
Blast2go	iron ion binding	GO:0005506	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P180

Fln msg:

Fln protein: MAPARVQAVAQSGFQSIPSEFVRPVYERPARETFNEFEIPLIDLSSLQVDELREKTVAEIGRASQEWGIFQVVNHGIPDELVQRLQAAGREFFDLPVEEKEPYANLDGVTDDRFEGYGTKLKCTSDGRQGWSDFYFHTVWPPSLIDFNKWPKHPPFYREVTEEYGRQVLGVVDKLLSAFSINLGLEESTVRNALGGENLEMELKINYYPACPQPDMALGVLPHTDMSALTVLKPNDVPGLQILRNNEWVTAKHVPDTLIIHIGDQLQTLSNGRYKSVLHRTLVSKDKVRMSWPVFCNPPLDLVVGPLNQLMDENHPPLFDAMTYREFKQRRKMKAMKQQSS*

Protein Length: 343

Fln nts: AATGTACAGGGTTCAACGCAGAGTACATGAGGACCACCGTGTAGAGTACTGTGCTGTTTGTCTGATCGTATTCTCAACTA_-_ATGGCTCCTGCCAGAGTACAGGCCGTCGCTCAAAGTGGTTTCCAATCGATTCCTTCCGAGTTCGTTCGGCCTGTTTACGAGAGGCCTGCTCGCGAAACATTTAACGAATTCGAGATACCACTCATAGACTTGTCATCGTTACAAGTCGATGAACTTCGTGAGAAAACGGTGGCAGAAATTGGAAGAGCGAGCCAGGAGTGGGGGATTTTCCAGGTTGTAAACCATGGAATACCCGACGAATTGGTCCAACGCTTGCAGGCTGCTGGCAGAGAGTTCTTCGATCTCCCGGTGGAGGAAAAGGAGCCGTACGCCAATCTTGACGGCGTTACGGATGACCGGTTTGAGGGGTATGGCACGAAGCTGAAATGCACGAGCGATGGGAGGCAGGGTTGGTCTGATTTCTATTTTCATACAGTGTGGCCTCCATCTCTCATAGATTTCAACAAGTGGCCCAAGCACCCACCCTTTTACAGAGAGGTGACTGAGGAATATGGAAGGCAAGTGTTGGGAGTGGTAGATAAGCTGCTGTCAGCCTTTTCAATAAATCTTGGGTTGGAAGAATCCACGGTGAGAAACGCTCTGGGAGGTGAGAATTTGGAAATGGAGTTGAAGATCAACTATTACCCAGCGTGCCCTCAACCAGATATGGCGCTGGGAGTGCTGCCTCATACCGACATGTCTGCTTTAACTGTGCTGAAGCCCAACGATGTGCCGGGGCTCCAGATCTTGAGGAACAACGAGTGGGTGACTGCCAAGCACGTTCCTGACACGCTTATCATACACATTGGTGACCAACTACAGACGTTGAGCAACGGGAGGTATAAGAGCGTATTGCACAGGACGTTGGTGAGCAAAGACAAAGTGAGGATGTCGTGGCCGGTGTTTTGTAATCCTCCTCTTGATTTGGTGGTGGGCCCACTCAATCAGTTGATGGATGAAAATCACCCCCCGCTGTTCGATGCCATGACGTACAGGGAATTCAAGCAACGCAGGAAAATGAAGGCAATGAAGCAGCAATCATCTTAG___TAAAGTAGTAATGCCAACTTAGTGTTTGGTTTTGTCTTATACTGCCTCTGTGTGTGTTTTTTTGTCCGTCTATTGCAGCTTTTTATTTCTTTGCGCTCTGCGTGAGGGTAGGGTCAGTAGCGTCTGTTCACCTTCTTGTGGCAACATAAGTTTTTCAAATAGAATTCGATGCGGCTGTAGCATTCGCTGATGTAATAAAGTTGTGATGGTCACGTACGCTGTATCCAAGGGTGACTAGCTGTTGAAGTGTTTATGTCTTTTTAGGAAAAATTATATAACTGTAATTTCAATATCCCATGTAGTGTATTGCTGTCATAAGCGCTGG

Fln Alignment:

Contig978___MAPARVQAVAQSGFQSIPSEFVRPVYERPARETFNEFEIPLIDLSSLQVDELREKTVAEIGRASQEWGIFQVVNHGIPDELVQRLQAAGREFFDLPVEEKEPYANLDGVTDDRFEGYGTKLKCTSDGRQGWSDFYFHTVWPPSLIDFNKWPKHPPFYREVTEEYGRQVLGVVDKLLSAFSINLGLEESTVRNALGGENLEMELKINYYPACPQPDMALGVLPHTDMSALTVLKPNDVPGLQILRNNEWVTAKHVPDTLIIHIGDQLQTLSNGRYKSVLHRTLVSKDKVRMSWPVFCNPPLDLVVGPLNQLMDENHPPLFDAMTYREF
A9P180_____________MATARVQAVSLSGLQSIPSQFVRPVYERPTLETFHEFEIPVIDLSSLEVDELREKTLTEIGRASQEWGIFQVVNHGIPEALGERLQAAGREFFDLPQEEKEAYANLEGVTDDRFEGYGTKLKCTSDGRQGWSDFYFHTLWPPSLTDFNRWPKHPSFYREVTEEYGRRVLGVVDKLLAAFSIDLGLEKSTVKDALGGENLEMELKINFYPPCPQPEMALGVLPHTDLCALTVLKPNDVPGLQIFKNNEWVTAKYVPNTLIIHIGDQLQTLSNGRYKSVLHRTLVSKDKVRMSRPVFCNPPLDLVVGPLKQLIDKNNPPLFDAMTLREF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
403			90	10	0.90298
438	90	10			0.90298
493		75		25	1.0
494	75		25		1.0
545		77		22	0.999999
551		80		20	0.999996
645	90		10		0.90298
709		88		11	0.923564
797	10		90		0.90298
922		88		11	0.923564
924			11	88	0.923564
925			11	88	0.923564
949		11		88	0.923564
1029		66		33	0.997452
1208			77	22	0.999999
1351	69		30		1.0
1365	20			80	0.999996
1368	10			90	0.90298
1420	16	16			0.988813
1423	20			80	0.995493
1426	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain