SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene972

Length: 1424 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene972 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Purine transporter, putative n=1 Tax=Ricinus communis RepID=B9RJS5_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	purine permease	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMG1

Fln msg:

Fln protein: MPGSGVSEIGNMEAAGNTGVEIMQAQVKNRKKKLRRWILLMLNVLALATGSAAGPLLTRFYFLHGGSKKWLSSWLQTAGWPLLLLPLYLSYRKKPNRENHITPNLFLACCGIGILTGADDYLYAYGLSFLPVSTSSVLIASQLGFNAVFALLLVRQKFNPFSINSVVLLTASAVLLAFHTTGDRPAGVTNKQYVLGFILTLAAAALYGFIIPLIELTYRKTKRQITYTLVMEMQFIMSVVATVFCTVGMLINRDFQALHREANEFRLGKIDYSMAIVWAAVTWQLFFIGVFGVTSMASSLLSGVIIAVTIPITEVLGVVLFHEKFSAEKGMSLVLALWGFASYLYGEYYSDLKLRPPKVPKQQNELEDLGGAAHAHAHHSINDVEELAMADSGKAP*

Protein Length: 398

Fln nts: CTTCAGGTTCTCTCTAGGCCATTCAAT_-_ATGCCTGGATCTGGTGTGTCTGAGATCGGGAACATGGAAGCAGCAGGCAATACAGGCGTCGAAATAATGCAAGCCCAGGTGAAAAACAGAAAGAAAAAATTAAGGCGGTGGATCCTCCTGATGCTCAACGTCTTGGCCCTAGCTACGGGTTCAGCTGCAGGACCTCTGTTGACAAGATTTTATTTCCTGCACGGTGGATCCAAAAAATGGCTCTCTTCTTGGCTCCAGACTGCTGGGTGGCCTCTTCTCCTGCTGCCTCTCTATTTGTCGTATAGAAAGAAACCCAACAGAGAGAATCACATTACCCCTAATCTCTTCCTGGCTTGCTGTGGAATTGGGATTCTGACAGGCGCCGACGATTACCTATACGCATATGGCCTCTCATTTCTGCCCGTTTCGACTTCCTCTGTCTTGATCGCCAGCCAGCTCGGCTTCAACGCTGTTTTCGCGCTACTGTTAGTCCGGCAAAAGTTCAACCCTTTCTCCATTAATTCTGTCGTTTTGCTCACTGCGAGTGCCGTCTTGCTTGCCTTCCATACAACCGGTGACCGGCCTGCAGGAGTAACGAACAAGCAATACGTGCTGGGGTTTATCTTGACTCTCGCCGCAGCTGCCCTATATGGTTTCATTATTCCGTTGATTGAGCTGACCTACCGAAAAACAAAGCGCCAAATAACATACACGCTCGTTATGGAGATGCAGTTCATAATGTCTGTTGTCGCTACTGTTTTCTGTACAGTGGGCATGCTCATTAACAGAGACTTCCAGGCTCTGCACAGAGAGGCCAACGAATTTCGTCTGGGGAAGATCGATTACTCCATGGCTATCGTATGGGCTGCAGTGACGTGGCAGCTTTTTTTCATTGGGGTCTTCGGTGTGACGTCCATGGCGAGCTCTCTGTTGAGTGGTGTCATCATTGCTGTTACGATTCCGATTACTGAGGTACTGGGGGTAGTTTTGTTCCATGAGAAATTCAGTGCGGAGAAGGGCATGTCGCTAGTGCTGGCCTTGTGGGGATTCGCCTCGTATCTCTATGGGGAATACTATAGCGATTTGAAACTGCGACCTCCTAAAGTGCCCAAACAGCAGAATGAGCTAGAAGACCTAGGAGGAGCTGCACATGCACATGCACATCACTCCATTAATGATGTTGAAGAATTGGCGATGGCTGACTCTGGTAAAGCACCGTAA___TATCCATGGTTCTATGAAGCTCCTTGCATTAATAATGGGCTTTAGTTTAACCTGTCAATGTAATTAAAGCAAATAGTCGGATCTTACAGTGCTTTAAGATTTGTCTTTGTTTGAAAAGAATCCTTTGAGGAAGGGTTTTTCTGTCGAGCTGTGATCTCTAAGCATCGGTGTAATGAAAGGTTAAATTTAATTTTCAATCCATTTTT

Fln Alignment:

Contig972___MEAAGNTGVEIMQAQVKNRKKKLRRWILLMLNVLALATGSAAGPLLTRFYFLHGGSKKWLSSWLQTAGWXXXXXXXXLSYRKKPNRENHITPNLFLACCGIGILTGADDYLYAYGLSFLPVSTSSVLIASQLGFNAVFALLLVRQKFNPFSINXXXXXXXXXXXXAFHTTGDRPAGVTNKQYVLGFILTLAAAALYGFIIPLIELTYRKTKRQITYTLVMEMQFIMSVVATVFCTVGMLINRDFQALHREANEFRLGKIDYSMAIVWAAVTWQLFFIGVFGVTSMASSLLSGVIIAVTIPITEVLGVVLFHEKFSAEKGMSLVLALWGFASYLYGEYYSDLKLRPPKVPKQQNELE
B8LMG1_____________MEAPADTGVERKQSQVSNRQKRLRHRILLLLNILALALGSTAGPLLTRFYFLHGGSKRWLSSWLETAGWPLLLLPLYLSYRKQPNRENHITPKLFLACCGIGILTGADDYLYAYGLSFLPLSTASVLIASHLGFTAGFALLLVRQKFSPFSVNSVVLLSASSVLLAFHTSGDRPEGVTSRQYVVGFVLTLGAAALYGFVIPLIELTYKRAKRPITYTLVMEMQFVMSVTATVFCTVGMLINGDFQALHREAEGFRLGKIDYSMALVWAAVAWQLFFIGVFGVTSMASSLLSGVIIALMIPGTEVLAVILFHEKFSAEKGMALVLALWGFASYLYGEYYYYLKLRPPDVPKQQSKPE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
383		90	10		0.90298
384		90		10	0.90298
590		11		88	0.923564
787	20		80		0.995493
841	16		83		0.994512
844			83	16	0.994512
845			83	16	0.994512
854		80		20	0.995493
922			12	87	0.992554
970	88			11	0.923564
1120		11		88	0.999952
1214	87		12		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
264	282	ATGTGC ATGTGC ATGTGC A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain