SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene939

Length: 1751 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene939 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Y0_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dna binding	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Remorin, C-terminal	IPR005516	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADM1

Fln msg: your sequence is shorter than subject: 410 - 429

Fln protein: MLNSSCNDSLSHNNSNINNPFGRFIKTNTNTCRTLALGFQSQACETNAVNPVSGNEMNAMGLRHGEIMGQKVGTEDVKLRAGSDDRSNMGDKYLGGGLVMGDVSSRVSSSVLSTDINLSSSLGSGSSEHGAFAALPSDVFMKDKFTDKVEPPPRYKVLEPGKIQHYGKHEGFQSMKDACTEVIPAVQHRDMGTDMTPLGSSRTSRCHTPVKAGSPARHNTPASRSALINSAGIDIGELEKCHFANLELQGLPSGIQFNSVDKSVSTWSSREEEEEEVSKSLRHFDMGDCKKSIVEIRAAAWEEAERSKCFTRYQREEARIEAWINLQTAKAEAETKKLEVKIEKMRSHLEEKLMKKMAGAHKRADEWRTAAKAQHAEQILKSAERAERMRRDGNVPFNLSACSCFSCRP*

Protein Length: 411

Fln nts: AATGTTAAATTCTTCCTGCAACGATTCATTATCTCATAATAATAGTAATATTAATAATCCTTTCGGTCGTTTTATCAAGACTAATACTAATACTTGCAGGACCCTTGCCCTTGGCTTCCAATCTCAGGCTTGTGAAACAAATGCAGTGAACCCAGTTTCTGGGAATGAGATGAATGCAATGGGGCTCAGGCATGGCGAAATTATGGGTCAAAAGGTTGGTACTGAGGATGTCAAGCTGAGGGCAGGATCAGATGATAGAAGCAATATGGGCGACAAATATCTTGGAGGAGGGTTAGTTATGGGCGATGTTTCAAGCAGAGTCTCAAGCTCTGTTTTATCCACAGATATTAACCTATCATCCAGCTTAGGCTCTGGGTCCTCAGAACATGGGGCATTTGCAGCTTTGCCATCCGATGTCTTTATGAAAGATAAATTTACTGATAAAGTTGAACCACCTCCCAGATATAAGGTCTTAGAGCCTGGGAAGATACAACATTATGGTAAACATGAAGGTTTTCAGTCCATGAAAGATGCCTGTACGGAGGTCATCCCAGCAGTTCAGCACCGGGATATGGGAACAGATATGACACCCCTCGGAAGTTCTCGCACTTCTCGTTGCCATACTCCTGTTAAAGCTGGTTCTCCTGCTAGGCATAATACTCCTGCCAGTAGATCTGCACTGATAAACAGCGCTGGCATCGACATTGGTGAACTGGAAAAGTGCCATTTTGCCAATTTAGAGCTCCAGGGCTTGCCATCGGGTATTCAGTTCAATTCAGTTGATAAGAGTGTTTCCACTTGGAGTTCGAGGGAGGAAGAGGAAGAAGAGGTCTCGAAGAGCTTGAGGCATTTTGACATGGGTGACTGCAAGAAGAGCATTGTTGAAATCAGAGCTGCAGCTTGGGAAGAAGCAGAACGATCAAAGTGCTTTACCAGATATCAGCGAGAAGAAGCAAGAATTGAAGCGTGGATAAATCTCCAGACTGCTAAAGCTGAAGCTGAAACCAAAAAACTTGAGGTCAAAATAGAGAAGATGAGATCTCATTTAGAGGAGAAACTGATGAAGAAAATGGCAGGAGCCCATAAGCGTGCAGACGAATGGCGAACAGCAGCCAAAGCACAACATGCAGAGCAGATCCTGAAAAGTGCTGAGCGCGCAGAGAGAATGCGCAGAGATGGCAATGTCCCTTTCAATCTTTCAGCCTGTAGCTGCTTCTCCTGTCGTCCCTGA___ACTCACAGAAAAAACCTTCACTTCAAAGGGTTATTCTTTCAATGTCTTGAAAACCCAACTGTAAATGTAGTTCCAGCAATGCCATGAAATATCCACTCCGCTGGCCATTGGCCAACAACTATAGGGGCTGTCAGGGGCTTTGTCTGTGCATATCGTTCACGCAAATAGTCGATCTAATCTAAGTCCCTCTGCACACTTCACGAGAGTTTGGGAATATAAAAAATTGTAAACAAGCGTGTACGCATGCATGAATCAAAATGAATGTCACTCCATCCATTGTATTTTGTGAATGTCACTCCACAGGTCTTGTCACGGTTGGTACATGCTGCCATCCCCAGACCCAATAATTATAAAATGGTTTCATGGTATGCCTGTGCCATGTGGTGTTTTGGAGCCTTGTGTGATTGTGGGGCTCAGGGATTTGATTCATCATTATGTCATCAATATTTTAATGGCAAGGATTACTCTGATACCAAGATCTTGAAGTCAAAGATTTGGGCAAGATCTCTATTCACTGGTT

Fln Alignment:

Contig939___MLNSSCNDSLSHNNSNINNPFGRFIKTNTNTCRTLALGFQSQACETNAVNPVSGNEMNAMGLRHGEIMGQKVGTEDVKLRAGSDDRSNMGDKYLGGGLVMGDXXXXXXXXXXSTDINXXXXXXXXXSEHGAFAALPSDVFMKDKFTDKVEPPPRYKVLEPGKIQHYGKHEGFQSMKDACTEVIPAVQHRDMGTDMTPLGSSRTSRCHTPVKAGSPARHNTPASRSALINSAGIDIGELEKCHFANLELQGLPSGIQFNSVDKXXXXXXXXXXXXXXXXXSLRHFDMGDCKKSIVXXXXXXXXXXXRSKCFTRYQREEARIEAWINLQTAKAEAETKKLEVKIEKMRSHLEEKLMKKMAGAHKRADEWRTAAKAQHAEQILKSAERAERMRRDGNVPFNLSACSCFSCR
D5ADM1_____________LINSSCNDSLSHNNNN--NPFGRFIKTNTSTCKTLALGFQSQACETNAENPVSGNEVNAMGLRHGEIMGQKVGTEDMKLKAGSYDRSKMSDKYFGAGLVMGDVSSRVSSSVLSTDINLSSSLGSGSSEHGAFAALPSDVFMKDKFTDKVEPAPRYNVPELGKIQHYGKHEGFQSMKDACTEVIPAVQHRDMGTEMTPLGSSRTSRCHTPVKNGSPARHNTPASRSALINSAGIDIGELEKCHFANLELQGLPSGIQFNSVDKSVSTWSSREEEEEDVSKSLRHFDMGDCKKSIVEIRAAAWEEAERSKCFTRYQREEARIEAWINLQGAKAEAETKKLEVKIEKMRSHLEEKLMKKMAGAHKRAEEWRAAAKAQHAEQILKSAERAERMRRDGNVPFNVSTCGCFSCR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
400	85	14			0.993533
520	25		75		1.0
581		11		88	0.923564
622	22	77			0.999999
727		20		80	0.995493
728	80	20			0.995493
729		20		80	0.995493
730	20			80	0.995493
742	66			33	0.997452
744		33		66	0.997452
745		33		66	0.997452
746	33			66	0.997452
747		33		66	0.997452
748	33			66	0.997452
749	33			66	0.997452
750		33	66		0.997452
756	66			33	0.997452
787	25	75			0.996473
789		75		25	0.996473
791		75		25	0.996473
859	40		60		1.0
1287		75	25		0.996473
1538		66		33	0.997452
1540	66	33			0.997452
1541		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain