SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene931

Length: 1511 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene931 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Solanum tuberosum]	-	-	86%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	89%
Blast2go	fructose-6-phosphate 2-kinase fructose- -bisphosphatase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphate 2-phosphatase.	EC:3.1.3.46	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	92%
Blast2go	6-phosphofructo-2-kinase.	EC:2.7.1.105	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	92%
Blast2go	fructose 2,6-bisphosphate metabolic process	GO:0006003	Biological Process	92%
Blast2go	fructose-2,6-bisphosphate 2-phosphatase activity	GO:0004331	Molecular Function	92%
Blast2go	6-phosphofructo-2-kinase activity	GO:0003873	Molecular Function	92%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-
Sma3	Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase	IPR016260	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9HND2

Fln msg: your sequence is shorter than subject: 394 - 498

Fln protein: RGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRIKHGLNQTADFFRADNQEGVDARNEVAALAMEDMLAWMQEGGQVGIFDATNSTRQRRKMLMKMAEGKCKIIFLETICNDPAIIDRNIRLKIQQSPDYANVSDFEAGMEDFKTRLANYEKVYEPVEEGSYIKMIDMVSGQGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGGDSVLSEDGEHYAKKLADFVNKRLRSERAASIWTSTLQRTILTARHIGGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYDARKADKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVIAHQAVLRALYAYFADKPLKEVPHIEVPLHTIIEIQMGVTGVHEKLYKIMDS*

Protein Length: 395

Fln nts: CGGGGAAAAACTTTCACCGCAGCAAAGCTGACTAGATATCTGCGATGGCTAGGCCATGATACAAAGCACTTCAATGTTGGGAAGTATCGTCGCATTAAGCATGGTTTAAATCAGACTGCAGATTTTTTCCGAGCTGACAATCAAGAAGGTGTTGATGCCCGCAATGAGGTAGCAGCATTGGCAATGGAAGATATGCTTGCATGGATGCAGGAAGGTGGCCAGGTAGGCATCTTTGATGCAACAAATAGTACACGTCAGCGTCGAAAAATGTTAATGAAGATGGCTGAAGGAAAATGCAAGATTATATTTTTGGAGACAATATGTAATGATCCGGCTATAATTGATCGGAACATTCGCTTGAAAATTCAACAAAGTCCTGACTATGCAAATGTGTCAGATTTTGAAGCTGGAATGGAAGACTTTAAAACTCGACTTGCTAATTATGAGAAGGTTTATGAGCCAGTAGAAGAAGGTTCTTATATAAAAATGATAGACATGGTTAGTGGTCAGGGAGGACAAATACAAGTGAACAACATTAGTGGATATCTTCCTGGGCGAATAGTCTTCTTCTTGGTTAATACACATCTTACACCACGTCCCATACTTCTTACACGACATGGGGAAAGTCGTGACAATGTAAGGGGAAGAATTGGAGGAGACTCAGTGTTAAGTGAAGATGGGGAACACTATGCAAAGAAATTGGCTGATTTTGTTAACAAGAGACTAAGATCTGAGCGTGCTGCTTCTATATGGACAAGCACTTTGCAAAGAACAATATTGACAGCGCGCCATATCGGTGGATTCCCAAAGATACAATGGCGTGCCTTGGATGAGATAAATGCGGGAGTCTGTGATGGAATGACTTACGAGGAAATAAAGAAAAACATGCCTGAAGAATATGATGCTCGAAAAGCTGACAAGCTAAGGTACCGTTACCCTCGTGGTGAATCCTACCTTGATGTCATCCAGAGATTAGAACCTGTCATTATTGAGCTGGAACGGCAGCGTGCTCCTGTTGTGGTAATTGCTCATCAGGCTGTTCTACGAGCTTTATATGCATATTTTGCTGATAAACCTTTGAAAGAAGTTCCACACATCGAGGTACCATTGCATACGATAATTGAGATCCAAATGGGTGTGACTGGTGTCCATGAAAAGCTGTATAAGATCATGGATTCATAA___GTGTATGCAGGATGATTTATTTGTCCTGCATTTTAACAAAATACATTGACAGATTGTAATTGAGATTCAAATGGGCGTAACTGGTGTCCATGAAAAGCTTTATAAGCTTATGGATTCATAATTGTAGGCAGGATGACTTATTCATCCTGCATTTTTAACAAAAGACACTGACAGCTAACAAAAGCTCATGTCAGCGGCTTTCATGTATTGCAGTAGTAGTATCTAGGGTTCTACATTTAGGAGAACATTGACATATAGTAAAAGATGAAATTGAACTGCCTATAGTCATAAATCAAATGGTGGTGAATTTGTCCACCAAATTTTTTACC

Fln Alignment:

Contig931___RGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRIKHGLNQTADFFRADNQEGVDARNEVAALAMEDMLAWMQEGGQVGIFDATNSTRQRRKMLMKMAEGKCKIIFLETICNDPAIIDRNIRLKIQQSPDYANVSDFEAGMEDFKTRLANYEKVYEPVEEGSYIKMIDMVSGQGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGGDSVLSEDGEHYAKKLADFVNKRLRSERAASIWTSTLQRTILTARHIGGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYDARKADKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVIAHQAVLRALYAYFADKPLKEVPHIEVPLHTIIEIQMGVTGVHEKLYKIMD
B9HND2_____________RGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGANQSADFFRADNPEGMEARNEVAALAMDDMIAWMQEGGQVGIFDATNSTRKRRNMLMKMAEGKCKIIFLETLCNDEHIIERNIRLKIQQSPDYAEQPDFEAGLQDFKSRLSNYEKVYEPVEEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGGDTVLSDAGEIYAKKLANFVEKRLKSEKAASIWTSTLQRTIITASPIIGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARRKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIEVPLHTIIEIQMGVTGVQEKRYKLMD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1229		87		12	0.992554
1380	87			12	0.992554
1453	12		87		0.992554
1454		12		87	0.992554
1457		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain