SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene930

Length: 1177 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene930 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cofactor assembly, complex C (B6F) [Arabidopsis thaliana] gb\|AAM12992.1\| putative protein [Arabidopsis thaliana] gb\|AAM47922.1\| putative protein [Arabidopsis thaliana] dbj\|BAD94460.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED94046.1\| cofactor ass	-	-	8.0e-33	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytochrome b6f complex assembly	GO:0010190	Biological Process	0.0	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family Ycf19	IPR003425	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRI8

Fln msg:

Fln protein: MAIPCSTGFLTPFSISYSYCCTASPKWMNTKNGKLLHYKYGGWSISRHKQSPMRLLAQHEYYANYRLSMGDRSFLRTLFKETRKGTVKNKELKSDSFHRLIPLLGVSIVLSGLLFSDTAYATTLSDMHNLVGGIHGLMLAELDPSTTKIAINILGPMFASFNILFIVRIVMSWYPQLPVGKFPYVIAYAPTEPLLSATRKAIPPVAGVDVSPVVWFAIFSFLNEILLGPQGLLVLISQQQL*

Protein Length: 243

Fln nts: TCCGCTGGTATAATAGATTCATGTGTACCATATTATGCTGCATAACATCCTTATGCAAACAAACGATATGTTTGAATATAGATCTGAATGACCACAGGATTGGCACTGAGGTTTCATCTCGGTTTCTAGCCATATATTCTGTTCACACGCATTATTTTGTCACGATTAAACGAAAAGAGGGTCTGGCCACCACGAAGCAAAACAACGATTGATCTCTTCAAATTCATATAGAAGCTGCACTACATTCCAAATTTTCTATTAGCATGTAATTGAATCGATGGAGTGCTAAGTTTGAAGAACACAGAGCACCCGTTA_-_ATGGCCATTCCTTGCAGCACTGGATTTCTTACTCCGTTTTCCATCTCCTATTCTTATTGCTGCACTGCATCACCAAAATGGATGAATACGAAAAACGGAAAGCTGTTGCATTATAAGTATGGGGGCTGGTCCATTTCCAGACACAAGCAATCTCCAATGCGCCTTCTGGCACAACATGAATATTATGCAAATTACAGGCTTTCCATGGGAGACAGGAGCTTTTTGCGTACATTGTTTAAGGAAACTAGAAAGGGAACAGTGAAGAATAAAGAGCTCAAAAGTGATTCATTCCATAGATTGATTCCTCTTCTGGGAGTCAGCATTGTTCTTTCTGGGTTATTGTTTTCTGATACAGCATATGCAACCACTCTGTCGGATATGCATAATTTGGTGGGAGGCATCCATGGACTGATGCTTGCAGAATTGGATCCATCAACAACAAAGATTGCGATAAATATATTAGGTCCTATGTTTGCTTCATTTAATATTCTGTTCATAGTGAGGATAGTAATGTCCTGGTACCCTCAACTGCCTGTGGGAAAGTTTCCGTATGTAATAGCCTATGCTCCCACGGAGCCATTACTTAGTGCTACTCGTAAGGCGATTCCTCCTGTCGCTGGGGTTGATGTGTCTCCTGTTGTCTGGTTTGCTATTTTCAGTTTCCTGAATGAAATTCTGCTAGGTCCACAAGGGCTTCTTGTTCTTATTTCTCAGCAGCAGCTTTAG___TTACATCAGTTCAAACTAGATATCCACAAGTCCTACTTGAACATATTTTGTATTTGGACTGTACGTCTCAGTTCCATCGATTGTCTAAAATCACAATACCAAATTTTTAAAGACCAATTGTTGGCTTGAAGGGAGT

Fln Alignment:

Contig930___MAIPCSTGFLTPFSI-----SYSYCCTASPKWMNTKNGKLLHYKYGGWSISRHKQSPMRLLAQHEYYANYRLSMGDRSFLRTLFKETRKGTVKNKELKSDSFHRLIPXXXXXXXXXXXLFSDTAYATTLSDMHNLVGGIHGLMLAELDPSTTKIAINILGPMFASFNILFIVRIVMSWYPQLPVGKFPYVIAYAPTEPLLSATRKAIPPVAGVDVSPVVWFAIFSFLNEILLGP
A9NRI8_____________MAFLYSTGFLCPFSNFAIVNSCSYCCAASPTWVNMKNGKLLNYKYEGWSIARHRQSPMRLTAQHEYYANYRLFTGDKSVLCAFLKETRKGTVKNKELKSDSFQKLTLFLGVGTVLSGLFFSDTANATTLSDMHNLVGGIHGLMLADLDPSTTKIAINILGPMFASFNILFIVRIVMSWYPQLPVGKFPYVIAYAPTEPFLSVTRKVIPPVAGVDVSPVVWFAIFSFLSEILLGP

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
467		66		33	0.997452
578	20		80		0.995493
609		16		83	0.994512
831		10	90		0.90298
834		10		90	0.90298
881		11		88	0.923564
909	90			10	0.90298
912			10	90	0.90298
913	90			10	0.90298
929	14			85	0.993533
932			85	14	0.993533
935	85		14		0.993533
938		14		85	0.993533
942		14	85		0.993533
945	14		85		0.993533
946		85	14		0.993533
947			14	85	0.993533
950	14			85	0.993533
951	85	14			0.993533
952			14	85	0.993533
954		14		85	0.993533
998	85	14			0.993533
1054		11	88		0.923564
1056	88			11	0.923564
1057	88			11	0.923564
1118	20			80	0.995493
1119		20		80	0.995493
1120	20		80		0.995493
1140		33	66		0.997452
1141	33	33	33		0.997753
1143		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain