SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene929

Length: 2388 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene929
TTTCATCCCCTGATTCAACAAGCCCTGCAACTGTCAATTCTCCATTATCATCACCCCCAGCGTCTTTAGACATTTCAAAGAATTTGTGTGATTGCGGTCAGAAGAAAGAATTTGCAGTGGATTCTTCTCTACCGGACATCAAGAATAGCATCTACAGCACCGATGAATTTCGGATGTATTCTTTTAAGGTAAGACCTTGTTCCAGAGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTGCACCCGGGTGAAAATGCTCGAAGAAGGGACCCTAGAAAGTATCATTATAGTTGTGTTCCTTGCCCTGATTTTCGTAAAGGGGCTTGTAGGAGAGGTGATGTTTGTGAATATGCACATGGTGTTTTTGAATGTTGGCTCCACCCTGCCCAATATCGAACCCGCCTTTGCAAAGATGGGACTAATTGCTCTCGCAGAGTGTGCTTTTTTGCGCATACACCTGAAGAATTGCGTCCATTGTATCCACCTGCTTGTTCATCAATGCTTTCTCAGAGAACCACCATGACTTCATCAGATAAGATGGCTGTCATGCATCCTCTTGCACCTGGATCTGCCTCTTCTGTCTTAATGATGTCTTCCTCCAATTCTTCACAAAGTAGTTTCCCTAACTCTCCAATGTCACCATTGTCATCTGCAAATGCATCTTCTCATTCTTCCTTTGGTGGTGGATCTTGGGCACATCCAAACTTACCGACTTTGCACCTTACCAATGGTGCTCTCCAAGCTAGTCGCCTGCGAACAGCAGTTAATGCTAGAAACATGCATCCAGATTGTTCGATTGAAAGTGGTGATTACGAAGGACAACTTCTGAATGAATTTGCTTATCTCTCCACCCAAGCCAGAGGAAATGGTCCTATGGCTATTGTATCTAGTAGTGGAAATACCCTTTGTAGGCCTAGAAAGTTCAAGGCTCATAATGTTGCTCCAACTAACCTCGAAGATTTGTTTGCGTCTGAAGTCTTCTCTCCTAAAATAACAGCCTCTGAATCTGCCTTTCTATCTGAGATTCAATCTCACAAATCAGCCCAGTTATCCCCACAGCTCCAGAGTCAGATGCTGTCCTCATTTAACACACAAGTATATCCACAAGGGAGCACACAAAGCCAAATGCATATGCAGCATGGCGGTGTAGACTGTCAGAGCCCTAGTGTTTTTCTTTCACCACCTCCTGTTCAGCTTGCTTCATACAGCTTGTCATCCTTTGGTCCCCTGTCATCTCTTACGGGAGAGTTGGAACGCCAAAACTCTAATGGGTCTCCTTTGTCACCGATTATGAGTACAGCTGCAGACTCGAGGGCTGTTGCGCTTTCCCAAAGAGACAAAGGAAGCTCTAGGTCAGGAGACCTTGGAGGTGCTACAACTTGGTCAGAATGGGGTTCTCCAACTGGTAAAGTAAATTGGGGAATTCAAGGGGAGGAGCTACAGAAATTCAGAAAATCAGCTTCTTTTGGTATCCGAAGTTCAGATGAACCAGATTTATCTTGGGTTCAGAAATTGTTTAAGGAAGCACCAATGGAATCAGTGGATCGAGGGACTATGGGTCGCTCTATGGATATAGCTAACAGTGTACAGATGGAGGCCACTGACCTAGGTGGCTGGATATCTCAGATAAATCCTGATCAAATTGCCCCTTTAACATTGTGAATACTTGATGGTAGCATTTTTGGCGACAGGGAATGGTATCATATGATGATGATGCATTTTTTTCATTTGTTTATTTCTATATAGAGATTCTACAATTTCCTTTATCCATCCTTTTTGTACATGAAATCTGGGAAGTTGAAGATAAAGGAAGATTTGTTGATGTCAACATTTTTGTATAGTATTTGTATTGAAAGTGCCAGTGATGGGAATGACGAAAATGGTCAATGAAACAGGCCAAATGATGAATTGGTTTGTTAAACATCCGGCGCGGATCTTTTGGTTTCTGCTCGTTTGTTGCTTTATATGTAGGTTCATACACAAAGTTTTGGAGGAAAGCATTCCTGAGTGGTGAAGCTGTGCCCTTGCAAGAAACTATTATTTGGTTTTGACAGTGTCCAATGCTTTTAACATGCTATATGTTCCAGATTTCAAATATGGCAAATTTGTAAAGATCAGCTGAAACTCTTTATCAATGACACCCCCCTCTGTTTTTTGCCAATAATATGTGGTTTACAGGTGGACCTTTGGGGTCAAATCTCTGCTCACCTGTTGATGCCGTTAGACTTTCTCATGTGGTCAGTTAGTAATTCAAGGCTTGCAGTAACTGATATTTTCAGTGGGCCCTGCCTAACATGACATGCATGCTAATACATTTGCTGATATATAAGGCGTTTTTTATCTCTCCCTTGCTGGTTTTGCAATGACCTGATGTTGGGATAACATT

Ace file of the UniGene sp_v2.0_unigene929 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	nucleic acid binding	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPY9

Fln msg: your sequence is shorter than subject: 554 - 768

Fln protein: SSPDSTSPATVNSPLSSPPASLDISKNLCDCGQKKEFAVDSSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTPEELRPLYPPACSSMLSQRTTMTSSDKMAVMHPLAPGSASSVLMMSSSNSSQSSFPNSPMSPLSSANASSHSSFGGGSWAHPNLPTLHLTNGALQASRLRTAVNARNMHPDCSIESGDYEGQLLNEFAYLSTQARGNGPMAIVSSSGNTLCRPRKFKAHNVAPTNLEDLFASEVFSPKITASESAFLSEIQSHKSAQLSPQLQSQMLSSFNTQVYPQGSTQSQMHMQHGGVDCQSPSVFLSPPPVQLASYSLSSFGPLSSLTGELERQNSNGSPLSPIMSTAADSRAVALSQRDKGSSRSGDLGGATTWSEWGSPTGKVNWGIQGEELQKFRKSASFGIRSSDEPDLSWVQKLFKEAPMESVDRGTMGRSMDIANSVQMEATDLGGWISQINPDQIAPLTL*

Protein Length: 555

Fln nts: TTTCATCCCCTGATTCAACAAGCCCTGCAACTGTCAATTCTCCATTATCATCACCCCCAGCGTCTTTAGACATTTCAAAGAATTTGTGTGATTGCGGTCAGAAGAAAGAATTTGCAGTGGATTCTTCTCTACCGGACATCAAGAATAGCATCTACAGCACCGATGAATTTCGGATGTATTCTTTTAAGGTAAGACCTTGTTCCAGAGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTGCACCCGGGTGAAAATGCTCGAAGAAGGGACCCTAGAAAGTATCATTATAGTTGTGTTCCTTGCCCTGATTTTCGTAAAGGGGCTTGTAGGAGAGGTGATGTTTGTGAATATGCACATGGTGTTTTTGAATGTTGGCTCCACCCTGCCCAATATCGAACCCGCCTTTGCAAAGATGGGACTAATTGCTCTCGCAGAGTGTGCTTTTTTGCGCATACACCTGAAGAATTGCGTCCATTGTATCCACCTGCTTGTTCATCAATGCTTTCTCAGAGAACCACCATGACTTCATCAGATAAGATGGCTGTCATGCATCCTCTTGCACCTGGATCTGCCTCTTCTGTCTTAATGATGTCTTCCTCCAATTCTTCACAAAGTAGTTTCCCTAACTCTCCAATGTCACCATTGTCATCTGCAAATGCATCTTCTCATTCTTCCTTTGGTGGTGGATCTTGGGCACATCCAAACTTACCGACTTTGCACCTTACCAATGGTGCTCTCCAAGCTAGTCGCCTGCGAACAGCAGTTAATGCTAGAAACATGCATCCAGATTGTTCGATTGAAAGTGGTGATTACGAAGGACAACTTCTGAATGAATTTGCTTATCTCTCCACCCAAGCCAGAGGAAATGGTCCTATGGCTATTGTATCTAGTAGTGGAAATACCCTTTGTAGGCCTAGAAAGTTCAAGGCTCATAATGTTGCTCCAACTAACCTCGAAGATTTGTTTGCGTCTGAAGTCTTCTCTCCTAAAATAACAGCCTCTGAATCTGCCTTTCTATCTGAGATTCAATCTCACAAATCAGCCCAGTTATCCCCACAGCTCCAGAGTCAGATGCTGTCCTCATTTAACACACAAGTATATCCACAAGGGAGCACACAAAGCCAAATGCATATGCAGCATGGCGGTGTAGACTGTCAGAGCCCTAGTGTTTTTCTTTCACCACCTCCTGTTCAGCTTGCTTCATACAGCTTGTCATCCTTTGGTCCCCTGTCATCTCTTACGGGAGAGTTGGAACGCCAAAACTCTAATGGGTCTCCTTTGTCACCGATTATGAGTACAGCTGCAGACTCGAGGGCTGTTGCGCTTTCCCAAAGAGACAAAGGAAGCTCTAGGTCAGGAGACCTTGGAGGTGCTACAACTTGGTCAGAATGGGGTTCTCCAACTGGTAAAGTAAATTGGGGAATTCAAGGGGAGGAGCTACAGAAATTCAGAAAATCAGCTTCTTTTGGTATCCGAAGTTCAGATGAACCAGATTTATCTTGGGTTCAGAAATTGTTTAAGGAAGCACCAATGGAATCAGTGGATCGAGGGACTATGGGTCGCTCTATGGATATAGCTAACAGTGTACAGATGGAGGCCACTGACCTAGGTGGCTGGATATCTCAGATAAATCCTGATCAAATTGCCCCTTTAACATTGTGA___ATACTTGATGGTAGCATTTTTGGCGACAGGGAATGGTATCATATGATGATGATGCATTTTTTTCATTTGTTTATTTCTATATAGAGATTCTACAATTTCCTTTATCCATCCTTTTTGTACATGAAATCTGGGAAGTTGAAGATAAAGGAAGATTTGTTGATGTCAACATTTTTGTATAGTATTTGTATTGAAAGTGCCAGTGATGGGAATGACGAAAATGGTCAATGAAACAGGCCAAATGATGAATTGGTTTGTTAAACATCCGGCGCGGATCTTTTGGTTTCTGCTCGTTTGTTGCTTTATATGTAGGTTCATACACAAAGTTTTGGAGGAAAGCATTCCTGAGTGGTGAAGCTGTGCCCTTGCAAGAAACTATTATTTGGTTTTGACAGTGTCCAATGCTTTTAACATGCTATATGTTCCAGATTTCAAATATGGCAAATTTGTAAAGATCAGCTGAAACTCTTTATCAATGACACCCCCCTCTGTTTTTTGCCAATAATATGTGGTTTACAGGTGGACCTTTGGGGTCAAATCTCTGCTCACCTGTTGATGCCGTTAGACTTTCTCATGTGGTCAGTTAGTAATTCAAGGCTTGCAGTAACTGATATTTTCAGTGGGCCCTGCCTAACATGACATGCATGCTAATACATTTGCTGATATATAAGGCGTTTTTTATCTCTCCCTTGCTGGTTTTGCAATGACCTGATGTTGGGATAACATT

Fln Alignment:

Contig929___VNSPLSSPPASLDISKNLCDCGQKKEFAVDSSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTPEELRPLYPPACSSMLSQRTTMTSSDKMAVMHPLAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHPNLPTLHLTNGALQASRLRTAVNARNMHPDCSIESGDYEGQLLNEFAYLSTQARGNGPMAIVSSSGNTLCRPRKFKAH---NVAPTNLEDLFASEVFSPKITASESAFLS----EIQSHKSAXXXXXXXXXXXXSFNTQVYPQGSTQSQMHMQHGGVDCQSPSVFLSPPPVQLAXXXXXXXXXXXXLTGELERQNSNGSPLSPIMSTAADSRAVALSQRDKGSSRSGDLGGATT---WSEWGSPTGKVNWGIQGEELQKFRKSASFGIRSSDEPDLSWVQKLFKEAPMESVDRGTMGRSMDIANSVQMEATD---LGGWISQINPDQI
C0PPY9_____________VHSPTSSPK-SMEALKGFGDVNEKKEYPVDPSFPDIKNSIYTTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRRYHYSCVPCPDFRKGTCRRSDVCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTSEELRPLIVSTGSAVPSPRAS-SSLDMSSVMSPLAPG----SPSSVSMMSPFLSNPQQGSVLTPPMSPSASSVNGYGGWPQPNVPTLHLPGSSVQASRLRAELNARDMPVEDSPRISDYEGQLLNDFSPLSTQARMNAAAAVISGGGNTTTRSGKYKSHGINTVAPTNLEDLFASEVTSPRVAVHEPSIFSQMSPQMQAHKTAHAYIQIQNQMLPPINTQAFSQGIKQ------------MSPGHSLMQSPFQSSSYGLGSPGRMSPRCVDVERHNTCGSPLSPAMAATLNSRIAAFVQRDKRSHSSRDLGANVTPNSWSDWGSPTGKVDWGVQGEELSKLRKSASFGPRSYEEPDLSWVQTLVKETTPDGKDGGNVGCSGETPHKGQIENVDHSVLGAWIEQMQLDQI

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
789	33		66		0.997452
793		66		33	0.997452
827	25		75		0.996473
828		75		25	0.996473
987	80		20		0.995493
1318	75	25			0.996473
1319	25			75	0.996473
1320	25	75			0.996473
1321			25	75	0.996473
1323	75			25	0.996473
1325	25			75	0.996473
1329	25		75		0.996473
1330	75	25			0.996473
1785	90			10	0.90298
1789			10	90	0.90298
1790		10		90	0.90298
1792	10		90		0.90298
1796	90			10	0.90298
1801	72		9		0.999994
1803		60	30	10	1.0
1804	88		11		0.923564
1805			22	77	0.999999
1806		11		88	0.923564
1808	66	11			0.999999
1814	75	25			1.0
1815	75	25			1.0
1816	25		75		1.0
1826		77	22		0.999999
1843	28	71			1.0
1844	71		28		1.0
1854	85			14	0.993533
1855		14	28	57	1.0
1856		57	28	14	1.0
1858		28		71	1.0
1865		28		71	1.0
1876		40		60	1.0
2044	25			75	0.996473
2109	75		25		0.996473
2113	75			25	0.996473
2114			25	75	0.996473
2117	25			75	0.996473
2118			25	75	0.996473
2123	25		75		0.996473
2128	25	75			0.996473
2130			25	75	0.996473
2131	25			75	0.996473
2132	20	80			0.995493
2133	20		20	60	0.99255
2135		75	25		0.996473
2136			75	25	0.996473
2267	60		40		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
671	682	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain