SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene922

Length: 2158 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene922
CGTCGTGACCTTGGCTGTCACTCTGTCTTTGGCTGTGATTCTCTATGATTCATGGACTTGGTTGTTTGTTTTCTCGGATCGTAACCAATAGCAACCGTTTCTCTACCATTTTTATCTCCTACTTGTAGAATGTCAAGTTTGAACACCAAGAAAATCATAGTTTATCAAACTTAAACATCAGTTCAAAAATTTATGAAAATAAGCACCTAATTGTGGAACCCTGGAAGGCCTAGTTTGGTTGGTTCAGAGACCACATTCTCCAGAGACGCTCGAAAACACACTCCCTTATGCAACTCGATACAGTGATCACTGGGGAAATCCTGGTTCTAGTGATTTGTGGAGGCAGCGCCAACCACGATTTCGGGAAAATGGCCTAAGGGACATAGTGGCAGCTTTTCCAGCACCAGAACCGTCATTCCACCAATTAATCGCTTCCTAACTTGTTCCTTGAGGCTACTCAAATATTTAAAAAAATCATTCGGCATGGCTGCCAGCATTCTCCACTCGCTTAATTTACTGTCCAACTCCCATATCCCCACTCTTCTAGCTCCATAATTTACATCTCCGACAGCAGACATAAGCAGAGGGCCAGAACTTCGTTCACAGCACACCAGCCTTGGATTCAATAAATTACTTGGCAACGCAGCCTCAACCTTCACAAGCCCTAAATCGCCTTTATCTCCATCAAAAAGCAGCCTAAATACTTGGCCTCTGTGGCGGTTGTGGCCGAAGGATTTGTACAGGCTATAACCTCTTCGACTCCGAGTATCGTAGTTTTTAGTTGAGGCACCCGTGTGGGTAATCGTAGGTGAAGCAACAGATTCAAATTCACCAGAACGGGGATCAAACTGGTCGTATCCAAGACACGGGTCTTGTACTTGCAAATCAATTCCAAACACGCGCTGAGGATTGAATTGGACCTGATCTGAAGAACAGCAGAAAATTTGAAGTGACAGCTTTACAGTAGCAGAAATGCTGCCTCTACAGCCAGAAAATAAGACCACTTTTGGGCGTCGCATAAAAGAAGGTGATTTAGTCATTTTATATGAGAGACATGACCGTATGAAAGCTGTCAGAGTACAGAGTGGAGCAGAGACTGGGAATAAATTTGGTGTTTTTGCCCACTCCGATTGGATTGGGAAGCCTTTTGGAACCAAGGTCTTTAGTAAAAAGGGTGGCTTCGTCTATCTGTTGGCCCCAACTCCCGAACTATGGACACTAGTTCTGAGCCACAGGACTCAGATCCTGTACATAGCAGATATCAGCTTTGTTGTGTCATTCTTAGAGATATGTCCTGGGTGTTTGGTGTTGGAATCTGGTACTGGAAGTGGCTCACTCACCACTGCACTTGCACGCGCTGTTGCACCTACAGGGCATGTTTATACATTTGATTTCCATGAACTTCGAGCAGATTCTGCAAGGGAGGACTTTGAAAAGAATGGCCTTAGCAGTCTCATAACGGTTGAAGTTCGAGACATTCAAGGCAAAGGATTCCCAGAAAAGTTTTGTGGGGACGTGGATGCTGTGTTCCTAGATCTTCCTCAGCCATGGTTAGCTCTTCCATCGGCAGCAGAAGCACTAAAACCTGATGGTATTTTGTGTTCATTTTCTCCTTGTATTGAACAGGTGCAACATGTGTGTGAAATTCTGAACACTATTGATTTTACAGATGTTCGGACATTTGAGGTCCTCCTCCGTACATATGAGGTTCGTGAGAAGTCATTTACAAAGAAGGTGGAGGAGAAATCATTTGACGAAATCAGTACATCCAATTCTTTCCCATGCAAAAGGCTGTGTTCTGAAGTGGAAGGCGATGACACTTTGTCCAAGCCTACTAATGTACAAGGGAAAGAGGCTATGACTGAAAAAGTGCAAACCGTGATGGCTAGGCCATATCCTGAGACAAAAGGTCATACCGGCTATTTGACATTTGCTAGACGATGTGTTTAGATCTCACTGTCGATGTGGTATTTGGCTTCTTGTTGCCATTCCACCGGGTTGAGGTTTCCTAGATCAAGTGATTTTTTAAACATTATTATCCTAAAATTTTGACGCCAAAGCCTTAGTTTTAGGTGGTAAAGTTATAACTTATATGTCTTTTGGAATCAGTGCTTATTTTTAAGTTCCTATGAAATGCATTAGCATTAATTTGTCCTCG

Ace file of the UniGene sp_v2.0_unigene922

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA, putative n=1 Tax=Ricinus communis RepID=B9S623_RICCO	-	-	66%
FL-Next	tr=tRNA, putative; Ricinus communis (Castor bean).	-	-	66%
Blast2go	trna (adenine-n1-)-methyltransferase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA (adenine-N(1)-)-methyltransferase.	EC:2.1.1.36	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	tRNA methylation	GO:0030488	Biological Process	0.0	72%
Blast2go	tRNA (adenine-N1-)-methyltransferase activity	GO:0016429	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	tRNA methyltransferase complex GCD14 subunit	IPR014816	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S623

Fln msg:

Fln protein: MLPLQPENKTTFGRRIKEGDLVILYERHDRMKAVRVQSGAETGNKFGVFAHSDWIGKPFGTKVFSKKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVSFLEICPGCLVLESGTGSGSLTTALARAVAPTGHVYTFDFHELRADSAREDFEKNGLSSLITVEVRDIQGKGFPEKFCGDVDAVFLDLPQPWLALPSAAEALKPDGILCSFSPCIEQVQHVCEILNTIDFTDVRTFEVLLRTYEVREKSFTKKVEEKSFDEISTSNSFPCKRLCSEVEGDDTLSKPTNVQGKEAMTEKVQTVMARPYPETKGHTGYLTFARRCV*

Protein Length: 327

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGTCTTTGGCTGTGATTCTCTATGATTCATGGACTTGGTTGTTTGTTTTCTCGGATCGTAACCAATAGCAACCGTTTCTCTACCATTTTTATCTCCTACTTGTAGAATGTCAAGTTTGAACACCAAGAAAATCATAGTTTATCAAACTTAAACATCAGTTCAAAAATTTATGAAAATAAGCACCTAATTGTGGAACCCTGGAAGGCCTAGTTTGGTTGGTTCAGAGACCACATTCTCCAGAGACGCTCGAAAACACACTCCCTTATGCAACTCGATACAGTGATCACTGGGGAAATCCTGGTTCTAGTGATTTGTGGAGGCAGCGCCAACCACGATTTCGGGAAAATGGCCTAAGGGACATAGTGGCAGCTTTTCCAGCACCAGAACCGTCATTCCACCAATTAATCGCTTCCTAACTTGTTCCTTGAGGCTACTCAAATATTTAAAAAAATCATTCGGCATGGCTGCCAGCATTCTCCACTCGCTTAATTTACTGTCCAACTCCCATATCCCCACTCTTCTAGCTCCATAATTTACATCTCCGACAGCAGACATAAGCAGAGGGCCAGAACTTCGTTCACAGCACACCAGCCTTGGATTCAATAAATTACTTGGCAACGCAGCCTCAACCTTCACAAGCCCTAAATCGCCTTTATCTCCATCAAAAAGCAGCCTAAATACTTGGCCTCTGTGGCGGTTGTGGCCGAAGGATTTGTACAGGCTATAACCTCTTCGACTCCGAGTATCGTAGTTTTTAGTTGAGGCACCCGTGTGGGTAATCGTAGGTGAAGCAACAGATTCAAATTCACCAGAACGGGGATCAAACTGGTCGTATCCAAGACACGGGTCTTGTACTTGCAAATCAATTCCAAACACGCGCTGAGGATTGAATTGGACCTGATCTGAAGAACAGCAGAAAATTTGAAGTGACAGCTTTACAGTAGCAGAA_-_ATGCTGCCTCTACAGCCAGAAAATAAGACCACTTTTGGGCGTCGCATAAAAGAAGGTGATTTAGTCATTTTATATGAGAGACATGACCGTATGAAAGCTGTCAGAGTACAGAGTGGAGCAGAGACTGGGAATAAATTTGGTGTTTTTGCCCACTCCGATTGGATTGGGAAGCCTTTTGGAACCAAGGTCTTTAGTAAAAAGGGTGGCTTCGTCTATCTGTTGGCCCCAACTCCCGAACTATGGACACTAGTTCTGAGCCACAGGACTCAGATCCTGTACATAGCAGATATCAGCTTTGTTGTGTCATTCTTAGAGATATGTCCTGGGTGTTTGGTGTTGGAATCTGGTACTGGAAGTGGCTCACTCACCACTGCACTTGCACGCGCTGTTGCACCTACAGGGCATGTTTATACATTTGATTTCCATGAACTTCGAGCAGATTCTGCAAGGGAGGACTTTGAAAAGAATGGCCTTAGCAGTCTCATAACGGTTGAAGTTCGAGACATTCAAGGCAAAGGATTCCCAGAAAAGTTTTGTGGGGACGTGGATGCTGTGTTCCTAGATCTTCCTCAGCCATGGTTAGCTCTTCCATCGGCAGCAGAAGCACTAAAACCTGATGGTATTTTGTGTTCATTTTCTCCTTGTATTGAACAGGTGCAACATGTGTGTGAAATTCTGAACACTATTGATTTTACAGATGTTCGGACATTTGAGGTCCTCCTCCGTACATATGAGGTTCGTGAGAAGTCATTTACAAAGAAGGTGGAGGAGAAATCATTTGACGAAATCAGTACATCCAATTCTTTCCCATGCAAAAGGCTGTGTTCTGAAGTGGAAGGCGATGACACTTTGTCCAAGCCTACTAATGTACAAGGGAAAGAGGCTATGACTGAAAAAGTGCAAACCGTGATGGCTAGGCCATATCCTGAGACAAAAGGTCATACCGGCTATTTGACATTTGCTAGACGATGTGTTTAG___ATCTCACTGTCGATGTGGTATTTGGCTTCTTGTTGCCATTCCACCGGGTTGAGGTTTCCTAGATCAAGTGATTTTTTAAACATTATTATCCTAAAATTTTGACGCCAAAGCCTTAGTTTTAGGTGGTAAAGTTATAACTTATATGTCTTTTGGAATCAGTGCTTATTTTTAAGTTCCTATGAAATGCATTAGCATTAATTTGTCCTCG

Fln Alignment:

Contig922___MLPLQPENKTTFGRRIKEGDLVILYERHDRMKAVRVQSGAETGNKFGVFAHSDWIGKPFGTKVFSKKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVSFLEICPGCLVLESGTGSGSLTTALARAVAPTGHVYTFDFHELRADSAREDFEKNGLSSLITVEVRDIQGKGFPEKFCGDVDAVFLDLPQPWLALPSAAEALKPDGILCSFSPCIEQVQHVCEILNTIDFTDVRTFEVLLRTYEVREKSFTKKVEEKSFDEISTSNSFPCKRLCSEVEGDDTLSKPTNVQGKEAMTEKVQTVMARPYPETKGHTGYLTFAR
B9S623_____________MLHTDPTRRLSFTRCITDGDLVIVYEKHDTMKAIKVCETSVLQNRFGVFKHSDWIGKPFGSKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFLITYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGVSSLVTVGVRDIQGEGFPDEYSGLVDSVFLDLPQPWLAIPSAAKMLKQDGVLCSFSPCIEQVQRSCETLRS-NFTDIRTFEVLLRTYEVRE----VKMDCGQGEEGISLGSPPYKRRQRSSEG-------SNVQNSSSS----PVIMARPCGDSRGHTGYLTFAR

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
263	25			75	0.996473
265		75	25		0.996473
266			25	75	0.996473
267		75	25		0.996473
268		75	25		0.996473
542		85	14		0.993533
561	83			16	0.994512
562	83	16			0.994512
563			16	83	0.994512
564		16		83	0.994512
593		14	85		0.993533
595			85	14	0.993533
597		85	14		0.993533
598	85			14	0.993533
601	85	14			0.993533
605		85	14		0.993533
607		14		85	0.993533
609		85	14		0.993533
610	85			14	0.993533
615	85			14	0.993533
633	87	12			0.992554
634			12	87	0.992554
635	87			12	0.992554
636	85	14			0.993533
637	85		14		0.993533
639			14	85	0.993533
648	85			14	0.993533
649		85	14		0.993533
650			85	14	0.993533
701	80		20		0.995493
815			80	20	0.995493
819	80		20		0.995493
882			83	16	0.994512
908		71		28	1.0
931	85			14	0.993533
1002	85			14	0.993533
1013		12		87	0.992554
1014			12	87	0.992554
1017	12		87		0.992554
1018		12	87		0.992554
1020			87	12	0.992554
1022		87	12		0.992554
1029	87		12		0.992554
1030	87			12	0.992554
1031		12	87		0.992554
1033	87	12			0.992554
1034			87	12	0.992554
1035		12	87		0.992554
1036	12			87	0.992554
1052	11			88	0.923564
1057			88	11	0.923564
1117	11			88	0.923564
1118		11	88		0.923564
1119	11		88		0.923564
1226	10	90			0.90298
1228	90			10	0.90298
1265		10	90		0.90298
1323		90	10		0.90298
1324			10	90	0.90298
1360	90			10	0.90298
1363		90		10	0.90298
1365	11	88			0.923564
1366		11		88	0.923564
1367		11	88		0.923564
1372	88		11		0.923564
1374		87		12	0.992554
1375			12	87	0.992554
1376	87			12	0.992554
1380		14	85		0.993533
1381			85	14	0.993533
1499		16		83	0.994512
1786			12	87	0.992554
1823			41	58	1.0
2037	83		16		0.994512
2138		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain