SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene894

Length: 1289 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene894

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	11-beta-hydroxysteroid dehydrogenase-like protein n=1 Tax=Pinus taeda RepID=Q0GJJ3_PINTA	-	-	91%
FL-Next	tr=11-beta-hydroxysteroid dehydrogenase-like protein; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	11-beta-hydroxysteroid dehydrogenase-like	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	11-beta-hydroxysteroid dehydrogenase.	EC:1.1.1.146	-	0.0	63%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Steroid hormone biosynthesis	00140		0.0	63%
Blast2go	Metabolic pathways	01100		0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	63%
Blast2go	steroid metabolic process	GO:0008202	Biological Process	63%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	63%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	63%
Blast2go	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	GO:0070524	Molecular Function	63%
Blast2go	binding	GO:0005488	Molecular Function	63%
Blast2go	17-beta-ketosteroid reductase activity	GO:0072555	Biological Process	63%
Blast2go	17-beta-hydroxysteroid dehydrogenase (NADP+) activity	GO:0072582	Biological Process	63%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q0GJJ3

Fln msg:

Fln protein: MGMCSRVKTWWRWGWDVALSATLLLMLPSAISFSKLFRMFFMTRPEPVRGKVVLITGASSGIGQHMAWEYAKRGANLVVVARRRNRLEEVAKECKAYGAQYAVVCPADLTKPQDCKRIVEFTISTFGRLDVLVNNAGTAGGSLFEEYENAAEYKRIVDIDFWGHVNTTHFALEHLQRRRGQIVVTSSMIAFLPFPFTTVYSAAKGALLNFFETLRIELISKSVTVTIASPGFIQSELTSREWPGKLPWWFPMARTEDAAREIVEAATRKERDVITPRWYSSLLWFRILCPEILEWVPRVFILGQAPTRGVEIVCNSVFGKFNTHTLFKTLKLA*

Protein Length: 335

Fln nts: CGTCGTGACCTTGGCTGTGGGTCGGGAACCAAAGAGTGGGGAAAAAAGGCCAATTACAGCCACA_-_ATGGGTATGTGCTCCCGTGTGAAAACATGGTGGAGGTGGGGTTGGGATGTGGCGTTATCAGCCACCCTGTTGCTCATGCTTCCTTCAGCAATTTCTTTCTCCAAACTCTTTCGAATGTTTTTCATGACCCGCCCAGAGCCCGTACGGGGAAAGGTAGTTCTCATCACAGGAGCGTCTTCGGGTATAGGCCAGCACATGGCGTGGGAGTACGCGAAGAGAGGTGCAAATCTGGTGGTGGTGGCGAGGCGTCGGAATCGACTGGAGGAAGTAGCCAAGGAATGCAAGGCTTACGGTGCACAGTATGCTGTTGTTTGCCCGGCTGATTTAACCAAACCCCAAGATTGCAAGAGGATTGTGGAATTCACAATTTCCACCTTTGGACGGTTGGACGTGCTAGTCAACAATGCTGGTACTGCTGGAGGGTCGTTATTTGAAGAATATGAGAATGCCGCCGAATATAAGAGAATTGTGGATATTGATTTCTGGGGACATGTCAACACAACCCATTTTGCTCTTGAACACCTTCAGCGCAGAAGGGGCCAGATAGTGGTCACTAGTTCCATGATTGCATTTCTTCCCTTCCCATTTACAACAGTTTACAGTGCAGCCAAAGGAGCACTGTTGAACTTCTTCGAGACACTTAGGATTGAGCTTATCAGCAAATCTGTAACAGTTACTATTGCGTCTCCTGGTTTTATACAGTCTGAATTAACATCCAGAGAATGGCCGGGAAAGCTGCCATGGTGGTTCCCCATGGCGAGAACAGAGGATGCCGCACGAGAAATTGTTGAAGCTGCAACGAGGAAAGAGCGAGACGTGATAACTCCTAGGTGGTATTCATCCTTGCTGTGGTTCAGAATACTATGCCCTGAAATTTTGGAATGGGTGCCCAGAGTATTCATCTTGGGACAAGCCCCTACAAGAGGAGTAGAGATTGTTTGCAATTCTGTTTTTGGGAAATTTAACACACACACCCTCTTTAAAACATTGAAACTTGCCTAG___GCATTAGGAGCATGAAAGGATCAAATCCTTGAGAAGAATAGAAGGAAACTTGCCTAGGCAGCAGCATGAAAGGATCAAATCATTGAGAAGAATAGAAGAATAGGCCTGTGTGATGTATATGATGTCCAATAAGTTCAAGTAGATTATTTATCTATCTCAAAAAAATGAATAAGTTAAAATAGATTATTTATCTATCTGAAAATACATAAGATTTATCTTTCTT

Fln Alignment:

Contig894___MGMCSRVKTWWRWGWDVALSATLLLMLPSAISFSKLFRMFFMTRPEPVRGKVVLITGASSGIGQHMAWEYAKRGXXXXXXXXXXXXXXXXAKECKAYGAQYAVVCPADLTKPQDCKRIVEFTISTFGRLDVLVNNAGTAGGSLFEEYENAAEYKRIVDIDFWGHVNTTHFALEHLQRRRGQIVVTSSMIAFLPFPFTTVYSAAKGALLNFFETLRIELISKSVTVTIASPGFIQSELTSREWPGKLPWWFPMARTEDAAREIVEAATRKERDVITPRWYSSLLWFRILCPEILEWVPRVFILGQAPTRGVEIVCNSVFGKFN
Q0GJJ3_____________MGMCSLVKTWWRWGWDVALSVPLLLMLPSAISFCKLFRMFIITRPERVRGKVVLITGASSGIGQHMAWEYAKRGANLVVVARRRNRLEEVAKECKAYGAQYAVVCPADLTKPQDCKRIVEFTVSTFGRLDVLVNNAGTAGGSLFEEYENAAEYKRIVDIDFWGHVNTTHFALEHLQRRRGQIVVISSMIAFLPFPFTTVYSAAKGALLNFFETLRIELISKSVTVTIASPGFIQSELTSREGPGKLPWWFPMARTEDAAREIVEAALRKERDVITPRWYSSLLWFRILCPEILEWVPRVFILGQAPTRGVEIVCNSVFGKFN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
191			75	25	0.996473
550		12	87		0.999964
552			87	12	0.999964
556	87			12	0.999964
559			11	88	0.999952
561	82		17		1.0
562	88			11	0.999952
566	82			5	0.999919

SSRs (tot: 1)

Start position	End position	Sequence	Length
294	305	TGG TGG TGG TGG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain