SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene883

Length: 938 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene883

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAB11582.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96466.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	wd repeat-containing protein 44-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	80%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	80%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: Distance to subject end: 78 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 264 - 314

Fln protein: MPQQTKVRQYGKSCKELTALYMRQEIQAHHGSIWTMKFSLDGHYLASAGQDRLIYVWQVIESDRKFDASADKPDDNASNAYVTVNGSPELLSLNIENLVDKKKRGKVTSGRKSSTMDCALLPESVFLLSEKPVCSFEGHLDDVLDLSWSQNQYLLSSSMDKTVRLWDMPSKSCLRVFSHNDYVTCIQFNPVDDRYFISGSLDKKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGTHKGNCHLYNTSGNKLQEENQIDV

Protein Length: 265

Fln nts: TTGGTTAAAAACTATCAAGGTTGTTGCCCACACAATTCGGGGCACCAAAGATAAGAAGAGCAGCGATGAGAGGGACACTTCTTCTGAAAAGGGGGGAAGGAGATCTAGTTCTGCTACAGATGATAGTCAGGATATTCTCCTGCAT_-_ATGCCACAGCAGACTAAAGTGCGTCAATATGGCAAGTCTTGCAAGGAATTAACAGCACTTTACATGCGTCAAGAAATCCAAGCTCATCATGGTTCTATTTGGACAATGAAGTTCAGCTTGGATGGCCATTATCTTGCTAGTGCTGGTCAGGACCGCCTTATTTATGTGTGGCAGGTGATAGAGTCAGACCGCAAATTTGATGCATCTGCTGATAAACCAGATGATAATGCCTCCAATGCCTATGTTACAGTCAATGGTTCACCAGAGTTGCTTTCCTTGAATATTGAAAACCTTGTAGATAAAAAGAAAAGAGGAAAGGTCACCTCTGGTAGAAAGAGCTCAACAATGGACTGTGCTTTGCTGCCGGAAAGTGTGTTCTTGCTTTCAGAAAAGCCAGTCTGTTCTTTTGAAGGTCATTTGGATGATGTCTTGGACCTTTCATGGTCCCAAAATCAGTATTTACTTTCATCATCGATGGACAAGACAGTGAGATTGTGGGACATGCCAAGCAAGAGTTGTCTAAGAGTCTTTTCACACAATGACTATGTAACGTGCATCCAGTTCAACCCAGTCGATGATAGATACTTTATTAGTGGTTCCCTTGATAAAAAAGTGCGAATTTGGAGTATTCCTGACCGCCAAGTTGTTGACTGGACTGATCTGCATGAAATGGTTACTGCTGCATGCTACACCCCTGATGGCCAGGGAGCACTTGTTGGTACACATAAGGGAAATTGCCACCTATATAATACATCAGGCAATAAGCTACAAGAAGAAAATCAAATTGATGTGC

Fln Alignment:

Contig883___MRQEIQAHHGSIWTMKFSLDGHYLASAGQDRLIYVWQVIESD--RKFDASADKPDDNA--SNAYVTVNGSPELLSLNIENLVDKKKRGKVTSGRKSSTMDCALLPESVFLLSEKPVCSFEGHLDDVLDLSWS-QNQYLLSSSMDKTVRLWDMPSKSCLRVF-SHNDYVTCIQFNPVDDRYFISGSLDKKVRIWSIPD----RQVVDWTDLHEMVTAACYTPDGQGALVGTHKGNCHLYNTSGNK
A9NPC1_____________LKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDK-TLRIWDV---------------HTGDC--------------IKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNR-DGSLIVSSSYDGLCRIWDSATGHCLKTLID--DENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
396	25		75		0.996473
398		75	25		0.996473
399	75		25		0.996473
400	75		25		0.996473
815	75	25			0.996473
818			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain