SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene880

Length: 1154 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene880 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	45%
Blast2go	uncharacterized protein	-	-	1.25741e-31	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.25741e-31	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	Somatotropin hormone, conserved site	IPR018116	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TAP1

Fln msg: your sequence is shorter than subject: 253 - 1184

Fln protein: AVSQLPEKDKERAENGCDFLLVRNDSSLQISSDTVISDDDSNSQERVADGLQESDSSCQTEATPSLVDQSNSEMLIEPSMLATSEENTQSEDVSTKHPEPDSCKDEPAPVSQEQTIKSDPPRGYLSRNLTLEEATDTILFCSSIVHNLAYKAVTIAMEKESPPIEIPRPMVTIVGRSEDRKNTCARDAARRTSKFQKIKSRQTAAHLQAPPNNNIEVNVKDHEAVMHVVTIPEKADTLKPLSANSKCNCTIM*

Protein Length: 254

Fln nts: GCAGTTTCACAGCTCCCTGAAAAGGATAAAGAAAGAGCAGAAAATGGTTGTGATTTTCTGTTGGTTAGAAATGATAGCTCTTTGCAGATCTCATCTGATACGGTTATCTCAGATGACGACAGTAATAGTCAAGAAAGGGTGGCAGATGGCTTGCAAGAAAGTGACAGTAGCTGTCAGACTGAAGCTACACCTTCGCTTGTTGATCAGAGTAATTCAGAGATGCTGATAGAGCCTTCTATGTTGGCCACATCAGAAGAGAATACTCAGAGTGAAGATGTAAGCACAAAACATCCTGAGCCAGACAGTTGTAAGGATGAACCTGCTCCTGTTTCACAAGAACAAACTATCAAGTCTGATCCTCCAAGAGGGTATCTTTCAAGAAATCTCACTCTGGAAGAAGCCACAGATACCATATTGTTCTGCAGCTCCATAGTCCACAATCTTGCCTACAAGGCTGTGACTATAGCTATGGAGAAGGAGAGTCCACCTATTGAAATTCCTAGACCCATGGTTACCATCGTGGGGAGGTCTGAAGATCGTAAAAATACTTGTGCTAGAGATGCTGCAAGACGGACCTCAAAATTTCAGAAAATTAAGTCAAGACAAACAGCAGCACACCTTCAAGCTCCACCCAATAATAATATTGAGGTCAATGTAAAGGATCACGAAGCTGTGATGCACGTTGTAACTATCCCAGAGAAGGCTGACACACTGAAGCCTTTAAGTGCAAATTCAAAGTGCAACTGCACTATCATGTAA___GAGTTATATAATTATTTTTAATTGTAACTTCTACTTGTCTGCTTGCATTCAAGTCTAAGAATGTGAGAGGGATGGGGAACTTATACACCCGATAGAAGGTTGTTAGTGTAAGCTGTGACGTGTGTTGAGAGCATTGCAGTTGTGTATGTAATTCTATAGATTTTACTCTGACTGGGCTGAGTAGCGTTGCCCAAATGATTGATTAGAGAGATCCAATTATTTTTAGTTTCTTATTATAAAGCACCACTTTGCGTTGGTGACAAAATGATGTAAATTGTGGCCATTCATGGACAGTGGGCATCGATGAAGAGATGAATGTTTTAATATTCCTTCAGGAGAACAGTGTGAGCAGTTCATTGGCAATCTTACACCATAATATAGTTGCTTGATCTCAC

Fln Alignment:

Contig880___EPSMLATSEENTQSEDVSTKHPEPDSCKDEPAPVSQEQTIKSDPPRGYLSRNLTLEEATDTILFCSSIVHNLAYKAVTIAMEKES-PPIEIPRPMVTIVGRS-EDRKNTCARDAARRTSKFQKIKSRQTAAHLQAPPNNNIEVNVKDHEAVMHVVTIPEKADTLKPLSANSKCNCTIM
D7TAP1_____________EPSVSASLDK-----DLTALVPEPNT-SDHAHGMLEESTIVVEGHGRNRSRSLTLDEATDTILFCSSIVHNLAYQAATIAMEKENVVPLEGSRPTVTLLGKSNSDRKEAHGRSAGKRSSKSQKSRQRRVETDAK-PPLTNTESDEKNDESLPRIVGLPDKVDSTKPPKLESKCNCAIM

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
346			66	33	0.997452
395		80	20		0.995493
410	80		20		0.995493
538		14		85	0.993533
588		11		88	0.923564
589		11	88		0.923564
592			88	11	0.923564
671		10		90	0.90298
749	85		14		0.993533
817	20		80		0.995493
818		20		80	0.995493
819	20			80	0.995493
820		80		20	0.995493
830	75	25			0.996473
831		25	75		0.996473
832		25	75		0.996473
834			75	25	0.996473
841		75	25		0.996473
1020		80		20	0.995493
1022		20		80	0.995493
1043	75	25			0.996473
1044		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain