SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene863

Length: 3023 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene863
CGTCGTGACCTTGGCTGTCACTCATTTTAATTTATTAAGCAAGCACTTCCTGCTCTTGTGCCAATGTTATTAGAGACATTGCTGAAACAGGAAGAGGACCAAGATCAGGATGAGGGGGCATGGAATCTCTCTATGGCTGGAGGAACTTGCTTGGGTCTTGTTGCCAGAACTGTGGGAGATGACGTTGTCCCCCTTGTTATGCCATTTGTAGAAGAAAACATATCAAAGCCAGATTGGAGATGTCGAGAGGCAGCTACTTATGCCTTTGGATCAATTCTGGAGGGTCCATCACCTGATAAGCTTACTCCTCTTGTCAATGTTGCTCTCAACTTTATTCTCAATGCTATGAAGGATGCGAATAGTCATGTTAAGGACACAACTGCATGGACCCTAGGGAGAATATTTGAATTTTTACACGGTTCAACAATGGAGACACCCATAATCACACAGTCAAATTTCCCACATATCCTATCAGTTCTACTTGAAAGCTTGAAGGATGCACCGAATGTTGCTGAAAAAGTCTGTGGTGCGTTGTATTTCCTGGCCCAAGGCTATGAAGATGCAGGGGCAAATTCCTCTCCATTATCTCCGTATTTTAAGAACATTGTTGAGGCTCTTCTTGATGCGGCACATAGGGAGGATGCAACTGAATCTAGGCTGCGGACTGCAGCATACGAGACATTGAATGAGGTTGTTCGTTGTTCAACTAAAGACACAGCTGCTATTGTTATGCAACTTGTTCCTGTCATCATGCTTAAGCTTAATGAAACTTTGGAGATGCAGAAACTATCATCAGAAGGCAAAGAAAAACAGAGTGATTTGCAAGCACTTCTATGTGGTTGCTTGCAAGTGATCATTCAAAAATTGAGTGCATCGGAGTCAACTAAGTATGGTATTCTACAATATGCTGATCAAATGATGAATCTTTTCTTGAGGGTATTTGCCTGTCGGAGTGCCACTGTTCATGAGGAAGCAATGTTGGCAATAGGAGCTCTGGCATATGCAACAGGTGTGGAATTTAGAAAATACATGCAAGAATTCTACCGATATTTAGAGATGGGTCTCCAAAACTTTGAAGAATACCAGGTCTGTGCTATTACTGTTGGTGTGGTCGGTGATATATGCAGGGCACTGGATGACAATGTTCTGCCTTTCTGTGATGGAATCATGACCCAGCTTCTTAAAGATCTGTCGAGCAATCAGTTGCACCGATCTGTTAAGCCTCCAATATTCTCATGCTTTGGAGATATTGCGTTGGCTATTGGACCCCAATTTGAGAAATACTTAATATATGCAATGCCTATGCTTCAGAGTGCAGCAGAGCTATCGGTGCAATCTGCAGGTGCTGATGATGAAATGATTGAATACAGTAATCAGCTACGTAATGGAATTCTAGAAGCTTACTCAGGGATTTTCCAAGGTTTCAAAAATTCACAGAAGGCTGAGTTGCTGATGCCTTATGCAGGTCACATTTTGCAATTCCTCGAGAGTATTTATCAAGACAAAGACATGGATGAGCAAGTAACAAAGGCTGCAGTTGGGGTCCTAGGTGACTTGGCTGATACATTGGGTTCAAATTCTGCACCGTTGCTGCGACAGTATGCCTTTTACAATGATTTTATTGATGAGTGCTTGTCATCTGATGATCAACTGATTAAGGAGACTGCAGAATGGGTTCAGATGACTGTAACCCGAGTTCTTTCGAGTTGATTGTGCCCAGAAAGTTTGGAAATGCATGCAGTTGTTTGGGTGCGTCGAGTTAAAGGAGTTTGGGATTGCATACTTATCATTGTGTCAATGATGATTCCAGAATCCACATGAAGCTTGCCAACATATTTACAGGTCCTCAGGGATTTTAAGGTACCACCTTGAGAGTCAGGGTTTTGGTTGAGAGGATCTGGGAATTTGATTCCTGCCTCTGCTAACTTTTCATCTCTTCCATTGCTTGGCAGCAAGATTTTGAAAGTCTTGCCCAAGTCCTGCTTGTTAGTGGGCCTCAAAGAGAGCTTAAACTGCTTTCATGGTTATGAAAGCAGCTCTCAGTGCTGTTGTTCTATCAACAGCTAAAACATCATCTTTGGTTGCTTTTGTTGTGCTTACAAAAGCATCAAAGGTTGGTTTGAAATAAGCAATGGCAATGTCAAGATTGCATAACAAGAAAAAAATTACCATTGCTTCTGCCACTTTGTATGCCAACCATGCCATACCTTGCTACGTGCCAAACTGGCCAGATTGATTAATAGCCCTTCTTCTATTACATCTGAAAGAAAGCACATTTGCTTTCTTAGGCTCAATGCTGATGCATTAGCCAAGTTCATCAAATATTAGCATCTGCTTTTCCACCTTCTTATCTTCCATGTTTTCCTCCTTATTAATTGGATAGGTTAAATATCCTTAAATCCATTGCATTTATGTTTAGGACTGCTTCAAAGCAAGCATGCATATGCAGAATAAATTTCTGCAATGCATTACTAATTTGAGTTGAACCATTCTTTCCTTCTCGTAGAAATCTTCTATTTGCTCCCGTGCTTATGTCTATCTTCGCTGTGCTCTCATGTGCATGTTTGTCGTTTAATGTTGGCCAATGCTATAGGTATTCTTGTGGATGGGATGACTCTGCTATTTTTTGGTTGGAAGTCTGTGGATGTATGGATGTTCAATTCATGTATCTTGTTTGACTATTGCATGGAATGATAATCCCAAGCGTGTCATCAATCTACCCGCCTAGTCTGTGTGTCTGATTGATTCAAATGAATATAGTAGTTATTAGTTTTTCTATTCATTGACCTTCAGGTGGTCAATTTTAAGGGTTGATAAGGCAGTGGTCTTTATCTTTTCTGCTTTATCATGGTGAAGGTCCATCCTGTACTGAATAAGAAGTTTTGCTTTGTATAGTGAGATTTGTGCAACTGCTTCATGCTTAATATGATCTCTTTCAATTGATATAGAATTATTGCCGCTGGAAATTTAAGGACAGTGTCTTTTGCTTGCAAAATATCTATCTATGCTATTCACTTCAACTT

Ace file of the UniGene sp_v2.0_unigene863 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj\|BAB09724.1\| importin beta [Arabidopsis thaliana] gb\|AED96362.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	87%
Blast2go	binding	GO:0005488	Molecular Function	87%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQV8

Fln msg: your sequence is shorter than subject: 570 - 874

Fln protein: RRDLGCHSF*FIKQALPALVPMLLETLLKQEEDQDQDEGAWNLSMAGGTCLGLVARTVGDDVVPLVMPFVEENISKPDWRCREAATYAFGSILEGPSPDKLTPLVNVALNFILNAMKDANSHVKDTTAWTLGRIFEFLHGSTMETPIITQSNFPHILSVLLESLKDAPNVAEKVCGALYFLAQGYEDAGANSSPLSPYFKNIVEALLDAAHREDATESRLRTAAYETLNEVVRCSTKDTAAIVMQLVPVIMLKLNETLEMQKLSSEGKEKQSDLQALLCGCLQVIIQKLSASESTKYGILQYADQMMNLFLRVFACRSATVHEEAMLAIGALAYATGVEFRKYMQEFYRYLEMGLQNFEEYQVCAITVGVVGDICRALDDNVLPFCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGPQFEKYLIYAMPMLQSAAELSVQSAGADDEMIEYSNQLRNGILEAYSGIFQGFKNSQKAELLMPYAGHILQFLESIYQDKDMDEQVTKAAVGVLGDLADTLGSNSAPLLRQYAFYNDFIDECLSSDDQLIKETAEWVQMTVTRVLSS*

Protein Length: 571

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAATTTATTAAGCAAGCACTTCCTGCTCTTGTGCCAATGTTATTAGAGACATTGCTGAAACAGGAAGAGGACCAAGATCAGGATGAGGGGGCATGGAATCTCTCTATGGCTGGAGGAACTTGCTTGGGTCTTGTTGCCAGAACTGTGGGAGATGACGTTGTCCCCCTTGTTATGCCATTTGTAGAAGAAAACATATCAAAGCCAGATTGGAGATGTCGAGAGGCAGCTACTTATGCCTTTGGATCAATTCTGGAGGGTCCATCACCTGATAAGCTTACTCCTCTTGTCAATGTTGCTCTCAACTTTATTCTCAATGCTATGAAGGATGCGAATAGTCATGTTAAGGACACAACTGCATGGACCCTAGGGAGAATATTTGAATTTTTACACGGTTCAACAATGGAGACACCCATAATCACACAGTCAAATTTCCCACATATCCTATCAGTTCTACTTGAAAGCTTGAAGGATGCACCGAATGTTGCTGAAAAAGTCTGTGGTGCGTTGTATTTCCTGGCCCAAGGCTATGAAGATGCAGGGGCAAATTCCTCTCCATTATCTCCGTATTTTAAGAACATTGTTGAGGCTCTTCTTGATGCGGCACATAGGGAGGATGCAACTGAATCTAGGCTGCGGACTGCAGCATACGAGACATTGAATGAGGTTGTTCGTTGTTCAACTAAAGACACAGCTGCTATTGTTATGCAACTTGTTCCTGTCATCATGCTTAAGCTTAATGAAACTTTGGAGATGCAGAAACTATCATCAGAAGGCAAAGAAAAACAGAGTGATTTGCAAGCACTTCTATGTGGTTGCTTGCAAGTGATCATTCAAAAATTGAGTGCATCGGAGTCAACTAAGTATGGTATTCTACAATATGCTGATCAAATGATGAATCTTTTCTTGAGGGTATTTGCCTGTCGGAGTGCCACTGTTCATGAGGAAGCAATGTTGGCAATAGGAGCTCTGGCATATGCAACAGGTGTGGAATTTAGAAAATACATGCAAGAATTCTACCGATATTTAGAGATGGGTCTCCAAAACTTTGAAGAATACCAGGTCTGTGCTATTACTGTTGGTGTGGTCGGTGATATATGCAGGGCACTGGATGACAATGTTCTGCCTTTCTGTGATGGAATCATGACCCAGCTTCTTAAAGATCTGTCGAGCAATCAGTTGCACCGATCTGTTAAGCCTCCAATATTCTCATGCTTTGGAGATATTGCGTTGGCTATTGGACCCCAATTTGAGAAATACTTAATATATGCAATGCCTATGCTTCAGAGTGCAGCAGAGCTATCGGTGCAATCTGCAGGTGCTGATGATGAAATGATTGAATACAGTAATCAGCTACGTAATGGAATTCTAGAAGCTTACTCAGGGATTTTCCAAGGTTTCAAAAATTCACAGAAGGCTGAGTTGCTGATGCCTTATGCAGGTCACATTTTGCAATTCCTCGAGAGTATTTATCAAGACAAAGACATGGATGAGCAAGTAACAAAGGCTGCAGTTGGGGTCCTAGGTGACTTGGCTGATACATTGGGTTCAAATTCTGCACCGTTGCTGCGACAGTATGCCTTTTACAATGATTTTATTGATGAGTGCTTGTCATCTGATGATCAACTGATTAAGGAGACTGCAGAATGGGTTCAGATGACTGTAACCCGAGTTCTTTCGAGTTGA___TTGTGCCCAGAAAGTTTGGAAATGCATGCAGTTGTTTGGGTGCGTCGAGTTAAAGGAGTTTGGGATTGCATACTTATCATTGTGTCAATGATGATTCCAGAATCCACATGAAGCTTGCCAACATATTTACAGGTCCTCAGGGATTTTAAGGTACCACCTTGAGAGTCAGGGTTTTGGTTGAGAGGATCTGGGAATTTGATTCCTGCCTCTGCTAACTTTTCATCTCTTCCATTGCTTGGCAGCAAGATTTTGAAAGTCTTGCCCAAGTCCTGCTTGTTAGTGGGCCTCAAAGAGAGCTTAAACTGCTTTCATGGTTATGAAAGCAGCTCTCAGTGCTGTTGTTCTATCAACAGCTAAAACATCATCTTTGGTTGCTTTTGTTGTGCTTACAAAAGCATCAAAGGTTGGTTTGAAATAAGCAATGGCAATGTCAAGATTGCATAACAAGAAAAAAATTACCATTGCTTCTGCCACTTTGTATGCCAACCATGCCATACCTTGCTACGTGCCAAACTGGCCAGATTGATTAATAGCCCTTCTTCTATTACATCTGAAAGAAAGCACATTTGCTTTCTTAGGCTCAATGCTGATGCATTAGCCAAGTTCATCAAATATTAGCATCTGCTTTTCCACCTTCTTATCTTCCATGTTTTCCTCCTTATTAATTGGATAGGTTAAATATCCTTAAATCCATTGCATTTATGTTTAGGACTGCTTCAAAGCAAGCATGCATATGCAGAATAAATTTCTGCAATGCATTACTAATTTGAGTTGAACCATTCTTTCCTTCTCGTAGAAATCTTCTATTTGCTCCCGTGCTTATGTCTATCTTCGCTGTGCTCTCATGTGCATGTTTGTCGTTTAATGTTGGCCAATGCTATAGGTATTCTTGTGGATGGGATGACTCTGCTATTTTTTGGTTGGAAGTCTGTGGATGTATGGATGTTCAATTCATGTATCTTGTTTGACTATTGCATGGAATGATAATCCCAAGCGTGTCATCAATCTACCCGCCTAGTCTGTGTGTCTGATTGATTCAAATGAATATAGTAGTTATTAGTTTTTCTATTCATTGACCTTCAGGTGGTCAATTTTAAGGGTTGATAAGGCAGTGGTCTTTATCTTTTCTGCTTTATCATGGTGAAGGTCCATCCTGTACTGAATAAGAAGTTTTGCTTTGTATAGTGAGATTTGTGCAACTGCTTCATGCTTAATATGATCTCTTTCAATTGATATAGAATTATTGCCGCTGGAAATTTAAGGACAGTGTCTTTTGCTTGCAAAATATCTATCTATGCTATTCACTTCAACTT

Fln Alignment:

Contig863___F*FIKQALPALVPMLLETLLKQEEDQDQDEGAWNLSMAGGTCLGLVARTVGDDVVPLVMPFVEENISKPDWRCREAATYAFGSILEGPSPDKLTPLVNVALNFILNAMKDANSHVKDTTAWTLGRIFEFLHGSTMETPIITQSNFPHILSVLLESLKDAPNVAEKVCGALYFLAQGYEDAGANSSPLSPYFKNIVEALLDAAHREDATESRLRTAAYETLNEVVRCSTKDTAAIVMQLVPVIMLKLNETLEMQKLSSEGKEKQSDLQALLCGCLQVIIQKLSASESTKYGILQYADQMMNLFLRVFACRSATVHEEAMLAIGALAYATGVEFRKYMQEFYRYLEMGLQNFEEYQVCAITVGVVGDICRALDDNVLPFCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGPQFEKYLIYAMPMLQSAAELSVQSAGADDEMIEYSNQLRNGILEAYSGIFQGFKNSQKAELLMPYAGHILQFLESIYQDKDMDEQVTKAAVGVLGDLADTLGSNSAPLLRQYAFYNDFIDECLSSDDQLIKETAEWVQMTVTRVLSS
C0PQV8_____________FHFIKQALPVLVPLLLETLTKQDEDQDQDEGAWNLAMAGGTCLGLVARTVEDDIVPLVMPYVQENISKPDWRCREAATYAFGSIIEGPSLEKLSPLVNMALNFILNALKDENNQVKDTTAWTLGRIFEFLHGPTVQSPVITQANLQSIVAALLESIKDTANVADKVCGAIYFLAQGYEQASAASCPLSPFLPDIIGSLLATADRKDAADSRIRTAAYETLNEIVRCSTQETASVIMQLLPLIMTKLGQTMELQIVSSDDREKQGDLQALLCGVLQVIIQKLGNQETTKYAILQYADQMMALFLQVFACRSATVHEEAMLAIGALAYATGAEFAKYMPEFYKYVEMGLQNFEEYQVCAVTVGVVGDICRALEAKIFPFCDGIMTHLLKDLSSSQLHRSVKPPIFSCFGDIALAIDGNFEKYLAYAMPMLQSAAEIAAQSVSTDDEMVEYNNQLRNGIFEAYSGILQGFKNA-KPELMMPYVVHILQFIEAVFRDKERDDSVTKSAAGVLGDLADTLGNNAAPVFRNSAFFNEFLGECMASEDNQVKETASWAQSTIQLVLQS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
2430	85		14		0.993533
2455			33	66	1.0
2456	33			66	1.0
2458		66		33	1.0
2459		66	33		1.0
2460	33	66			1.0
2462	33			66	1.0
2467	33			66	1.0
2468		66	33		1.0
2469		16	33	50	1.0
2474	60	40			1.0
2476	40	60			1.0
2478			40	60	1.0
2700	11			88	0.923564
2704	77			22	0.999999
2708	77	22			0.999999
2711	22			77	0.999999
2712			22	77	0.999999
2714	77			22	0.999999
2716	88		11		0.923564
2717	88	11			0.923564
2718			88	11	0.923564
2720		22	77		0.999999
2978		33	66		0.997452
2979			66	33	0.997452
2980	66			33	0.997452
2981	66		33		0.997452
2983	33			66	0.997452
2984	33		66		0.997452
2986	33			66	0.997452
2987	33			66	0.997452
2988	33		66		0.997452
2990	33			66	0.997452
2994		33		33	0.997753
2995	33	33		33	0.997753
2998	66			33	0.997452
2999	66		33		0.997452
3000	33	33		33	0.997753
3001	33	33		33	0.997753
3004	66	33			0.997452
3005	66		33		0.997452
3006		33		66	0.997452
3007	33		66		0.997452
3010			33	66	0.997452
3011		33	66		0.997452
3015			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain