SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene857

Length: 4004 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene857
GCAAAAGAAGAGAACCTGATGAGCTGGGCGCAAAGCATCTGGATTTTCAGTCAACTCACGGATTCACCCAACAGACGGCAATCGACGGAAACCAGAACCTTTGTGAACGGCAAAAGCAATTATTTAATTTCGAGCAATTTGAATTCTCATTTCCGAGGGTTCTTCTCACGATTACGCAGGCGGAAGAATTTGATGCAGGCAAAATTAGTTGGTCCCGGCAAATCTCCATTTCCAAATTTTCGCTTCACCTACACTGAATCGATCCCGGTTGGAGTAGATATGTAATCTGTCGTCGAACTTCTCCGCAGACCGCTGAATTTAGCATATTTTGTGTCAAGACGACTATTCTGAGCTCAAATTTTATCATTTTGACCTCGAATTGTCCGAATTCGAGTCAGGTTACGAATTCTGACGAATTTGCGGTAAAATTCGCTAGTTATGAGCTTAGCTTCACTGTACCGAGGCTGAATTTCTGGTATTTTTAGCAATTTTCCCCTGCATTTTCTATAAAGGCCAAATTCTTAAGTTCAAAGGCAAATTCGTGATATTTTGAGCAATTTTGCCTTGAATTTCCTGTAAAGATGAGCGTTGTCGGTCTCGACATTGGGAACGAGAACTGCGTTGTAGCTGTAGCAAAGCAACGCGGCATCGACGTGATTCTCAACGATGAATCCAAGCGGGAAACCCCGGCGATGGTGTGCTTCGGCGATAAGCAGCGGTTTCTGGGCACGGCAGCGGCGGCCTCTGCAACGATGAATCCGAAAACCACCATTACGCAGATCAAGCGTTTAATCGGAAGGAAGTTCTGGGATAAAGAGGTCCAGCACGATCTTGCGCTGTTCCCCTTTAAAGCCTCGGAAGCGCCGGACGGCGGTATTCTGATCCACGTCCGGTACTTAGAAGAGGACAAAGTATTCACCCCGACGGAAATCTTAGGTATGCTTCTATCGCATTTAAAGGGAATAGCCATGAAGAATTTGGAAACATCCGCGGTTTCCGACTGTGTGATCGGAATACCGGCCTACTTTACAGAATTACAGAGGCAAGCTTACTTAGACGCGGCCTTCATAGCCAATCTAAATCCTCTCCGTCTGCTGCACGAGTCCACTGCCATTGCCCTTGCATATGGCATTTACAAGACGGATTTGCCGGATACCTATCCAATTTACGTTGTATTCGTTGATGTCGGCCACAGTGATACGCAAGTCTGTGTTGCGGCCTTCCTGAAAGGTCATCTTAAGATCCTCTCACATGCATTTGACAGATCTTTAGGTGGCAGAGACTTTGATGAAGTTCTGTTCAATTACTTTGTCACAAAATTTAGTGAAGACTATCGAATTAACGTAACCGCAAACCTCCGCGCAAGCACAAGGTTGCGGGCTGCCTGCGAGAAGCTCAAGAAGGTCTTGAGCGCCAATGCCGAGGCTCCTCTTAATATTGAGTGTCTGATGGACGAGAAGGATGTTAAAGGTTTTATCAAGAGGGAGGATTTTGAGAAGTTGTCATCTAATTTGTTAGAGAGGTTAAAAATACCTTGTCAGAAGGCATTGGCTGAAGCTAAGATGAGCGTGGACACAATTTATTCCGTTGAGGTGGTGGGATCTGGTTCTCGTGTCCCTGCCATATTGAGAACTCTGAGTAGCTTGTTCAAGAAGGAACCGAGTCGGACTCTGAATGCTAGCGAGTGCATTTCTCGAGGATGTGCTCTACAATGTGCCATGTTAAGCCCTACATTTAGGGTGCGTGATTTTCAGGTTGAAGATTCTTTTCCCTTCTCCATTGCATTAAATTGGAAAGGACATGCCCCTACCTTGGAAGCAAATGAAGGAAGTGTAGCGATGCAATCAAATAATGTTGTATTCCCAAAAGGCAATCCAATACCCAGTATCAAAACAGTGGCGTTTCACAGGGCAAGCACCTTCACTCTAGATGCTGTTTATGCTGATATGAAGGATTTGCCACTTGGAACGTCTCCAAAGATCAGTTCTTTCACTATTGGTCCCTTCCAAGCATCCAAGCCTGAGAAATCAAAGATTAAAGTTATTCTTCAGTTAAATTTGCATGGCATCGTAACAGTTAATTCTGCTTCTCTTATAGAAGAGGAGGAGGTGGAGTACCCTATTACATCTACGGTTGTGATGGAAACAGAAAAAAACAAGGATGGTGGAAGCATGCCTGATCCTTCTGCAGATGCAACAAAGATTAATGCTGTAAATGGTCATGGATCTACATCTCCTGCTGTTGATCACTCACAAGCAGAACTCACCAAGCATGAGGTAGTGAAAAAGAGAACTTCCATACAAGTGACTGTGGATATGTTGGGAGGCTTATCGCAAGTTGAAAGAAAAAAAGCAAAAGATAAAGAGGATGATTTAGCAAATCAAGATAAAGTTATGGAGGAGACTAAAGATAAGAGGAATGCTGTGGAGTCTTATGTATATGATATGCGTAATAAGCTTTTTAACAAGTACCATAACTACGCAACTGAGTTTGAGCGGAAAGAACTTACTCAAAGGTTGCAGAATACTGAAGATTGGCTGTATGAAGAGGGTGACGATGAATCCAAAGGGGTATATGTAGCTAAGCTTGATGAACTCAAAAAGATTGGAGATCCCATAGAACAAAGATACAAGGAGGAAGAAGCCCGTGCAGCAGCAGTTAAGGGTTTACAATATTATATTAGAGAATACCGAAATGCAGCTATGCTAGGAGATACTGGGTTTCATCATATAGAAGCCAAAGACAAACGAAAGGTTATTCTGGAGTGTGATGATGCAGAAGCTTGGCTGACAGAGAAAAGCCAACAGCAGGATACCATTGCCAAGTGTGAAAACCCCATACTACTCTCTACTGACATTAGAAAAAGGACTGAGGCTTTAATGAGCATTTGCAATCCTATCTTCACAAAACCTAGGACTGGCCCATCAAAATCTTCTTCAAAAACAGGTGATGCAAAAGATTCAAAGCAGAACACATCTAGTGGAGGTGAACAATCATCAGAGCCAATGGACACTGACCAACCACAGGATCCTGTGAGCATGCAAACAGATTGAGCGATTTAACTTCACACAAGGGCGCGATAAGGCTAGGAAATATGTTCCAGGATGGAATGACATGAGTTTTATATTGGTACCATGTTCAATACTTTACTTTGTAATTTGTACTAAGTCTGTTAATAGAATAGTAGGCTCTGCCTCTTACTTTCTGGGGTTGATACTAGTGCGAAGGGTGATCTTTCAGACTAATAATGTGTACTAGTTAAGCACAACTGATGTGGATGTGTTGGATTTTGTCTTTATCCACTCCACGTTCTAATGAAGAGTGTAGAGCTACTTAATGGAAAAAATAGTGTCCGTCACATTGTTTAGTGGGTTGATACCTATGGAGCATTGTCCTTGTCTCTCCAGAATAATAACATGTGCTAATGCACTTGTGGAGATGTAAACTGCACTCTGGCTATTGGGCCAAAGTTCTAACAAATATGTAATTAGAAAGCAATTTAGCATTTTTGAGTAAAATCCACCATGATAACTTATAGTGCAACTTCTGAATATCCTCCGGAGAAAGACAAATAGAGTAATATATCATGGCAACATTTCTCTTAGGGGCATTTCAATAGAGTCATTCTTGAAAAGCTTTGAACTTTCCTCTTGAAGACACCATTCAAAGATGGCATTTGTTGAGGAGCAAAAATTGATGCTATATATCTGGCATCTCCTTGAACATATGGCATTTTAAGTATAGAAGATTCAGGTAGGTTGAATGCAAGTACCATGTCTCTTGAAGCAAAACACTCTTTCTGGAGGATAATTGATTAGAGATAACTTTCTTTGAATTACAATATTCATTTCTTGTTGATTATTGATACAGTAGGGTGAATTGCAAATTTAAGAAATGGTTGTTGCTGTCCTACAGCTGTTGAAACTTGAAAGTTTGTAATCACAGTATTATTTATTTTTCAATACTCCTAGATAGAAATCATAGAAATCGTATATTATGCATTC

Ace file of the UniGene sp_v2.0_unigene857 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat-shock protein [Arabidopsis thaliana]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQU3

Fln msg: your sequence is longer than subject: 824 - 388

Fln protein: MSVVGLDIGNENCVVAVAKQRGIDVILNDESKRETPAMVCFGDKQRFLGTAAAASATMNPKTTITQIKRLIGRKFWDKEVQHDLALFPFKASEAPDGGILIHVRYLEEDKVFTPTEILGMLLSHLKGIAMKNLETSAVSDCVIGIPAYFTELQRQAYLDAAFIANLNPLRLLHESTAIALAYGIYKTDLPDTYPIYVVFVDVGHSDTQVCVAAFLKGHLKILSHAFDRSLGGRDFDEVLFNYFVTKFSEDYRINVTANLRASTRLRAACEKLKKVLSANAEAPLNIECLMDEKDVKGFIKREDFEKLSSNLLERLKIPCQKALAEAKMSVDTIYSVEVVGSGSRVPAILRTLSSLFKKEPSRTLNASECISRGCALQCAMLSPTFRVRDFQVEDSFPFSIALNWKGHAPTLEANEGSVAMQSNNVVFPKGNPIPSIKTVAFHRASTFTLDAVYADMKDLPLGTSPKISSFTIGPFQASKPEKSKIKVILQLNLHGIVTVNSASLIEEEEVEYPITSTVVMETEKNKDGGSMPDPSADATKINAVNGHGSTSPAVDHSQAELTKHEVVKKRTSIQVTVDMLGGLSQVERKKAKDKEDDLANQDKVMEETKDKRNAVESYVYDMRNKLFNKYHNYATEFERKELTQRLQNTEDWLYEEGDDESKGVYVAKLDELKKIGDPIEQRYKEEEARAAAVKGLQYYIREYRNAAMLGDTGFHHIEAKDKRKVILECDDAEAWLTEKSQQQDTIAKCENPILLSTDIRKRTEALMSICNPIFTKPRTGPSKSSSKTGDAKDSKQNTSSGGEQSSEPMDTDQPQDPVSMQTD*

Protein Length: 825

Fln nts: GCAAAAGAAGAGAACCTGATGAGCTGGGCGCAAAGCATCTGGATTTTCAGTCAACTCACGGATTCACCCAACAGACGGCAATCGACGGAAACCAGAACCTTTGTGAACGGCAAAAGCAATTATTTAATTTCGAGCAATTTGAATTCTCATTTCCGAGGGTTCTTCTCACGATTACGCAGGCGGAAGAATTTGATGCAGGCAAAATTAGTTGGTCCCGGCAAATCTCCATTTCCAAATTTTCGCTTCACCTACACTGAATCGATCCCGGTTGGAGTAGATATGTAATCTGTCGTCGAACTTCTCCGCAGACCGCTGAATTTAGCATATTTTGTGTCAAGACGACTATTCTGAGCTCAAATTTTATCATTTTGACCTCGAATTGTCCGAATTCGAGTCAGGTTACGAATTCTGACGAATTTGCGGTAAAATTCGCTAGTTATGAGCTTAGCTTCACTGTACCGAGGCTGAATTTCTGGTATTTTTAGCAATTTTCCCCTGCATTTTCTATAAAGGCCAAATTCTTAAGTTCAAAGGCAAATTCGTGATATTTTGAGCAATTTTGCCTTGAATTTCCTGTAAAG_-_ATGAGCGTTGTCGGTCTCGACATTGGGAACGAGAACTGCGTTGTAGCTGTAGCAAAGCAACGCGGCATCGACGTGATTCTCAACGATGAATCCAAGCGGGAAACCCCGGCGATGGTGTGCTTCGGCGATAAGCAGCGGTTTCTGGGCACGGCAGCGGCGGCCTCTGCAACGATGAATCCGAAAACCACCATTACGCAGATCAAGCGTTTAATCGGAAGGAAGTTCTGGGATAAAGAGGTCCAGCACGATCTTGCGCTGTTCCCCTTTAAAGCCTCGGAAGCGCCGGACGGCGGTATTCTGATCCACGTCCGGTACTTAGAAGAGGACAAAGTATTCACCCCGACGGAAATCTTAGGTATGCTTCTATCGCATTTAAAGGGAATAGCCATGAAGAATTTGGAAACATCCGCGGTTTCCGACTGTGTGATCGGAATACCGGCCTACTTTACAGAATTACAGAGGCAAGCTTACTTAGACGCGGCCTTCATAGCCAATCTAAATCCTCTCCGTCTGCTGCACGAGTCCACTGCCATTGCCCTTGCATATGGCATTTACAAGACGGATTTGCCGGATACCTATCCAATTTACGTTGTATTCGTTGATGTCGGCCACAGTGATACGCAAGTCTGTGTTGCGGCCTTCCTGAAAGGTCATCTTAAGATCCTCTCACATGCATTTGACAGATCTTTAGGTGGCAGAGACTTTGATGAAGTTCTGTTCAATTACTTTGTCACAAAATTTAGTGAAGACTATCGAATTAACGTAACCGCAAACCTCCGCGCAAGCACAAGGTTGCGGGCTGCCTGCGAGAAGCTCAAGAAGGTCTTGAGCGCCAATGCCGAGGCTCCTCTTAATATTGAGTGTCTGATGGACGAGAAGGATGTTAAAGGTTTTATCAAGAGGGAGGATTTTGAGAAGTTGTCATCTAATTTGTTAGAGAGGTTAAAAATACCTTGTCAGAAGGCATTGGCTGAAGCTAAGATGAGCGTGGACACAATTTATTCCGTTGAGGTGGTGGGATCTGGTTCTCGTGTCCCTGCCATATTGAGAACTCTGAGTAGCTTGTTCAAGAAGGAACCGAGTCGGACTCTGAATGCTAGCGAGTGCATTTCTCGAGGATGTGCTCTACAATGTGCCATGTTAAGCCCTACATTTAGGGTGCGTGATTTTCAGGTTGAAGATTCTTTTCCCTTCTCCATTGCATTAAATTGGAAAGGACATGCCCCTACCTTGGAAGCAAATGAAGGAAGTGTAGCGATGCAATCAAATAATGTTGTATTCCCAAAAGGCAATCCAATACCCAGTATCAAAACAGTGGCGTTTCACAGGGCAAGCACCTTCACTCTAGATGCTGTTTATGCTGATATGAAGGATTTGCCACTTGGAACGTCTCCAAAGATCAGTTCTTTCACTATTGGTCCCTTCCAAGCATCCAAGCCTGAGAAATCAAAGATTAAAGTTATTCTTCAGTTAAATTTGCATGGCATCGTAACAGTTAATTCTGCTTCTCTTATAGAAGAGGAGGAGGTGGAGTACCCTATTACATCTACGGTTGTGATGGAAACAGAAAAAAACAAGGATGGTGGAAGCATGCCTGATCCTTCTGCAGATGCAACAAAGATTAATGCTGTAAATGGTCATGGATCTACATCTCCTGCTGTTGATCACTCACAAGCAGAACTCACCAAGCATGAGGTAGTGAAAAAGAGAACTTCCATACAAGTGACTGTGGATATGTTGGGAGGCTTATCGCAAGTTGAAAGAAAAAAAGCAAAAGATAAAGAGGATGATTTAGCAAATCAAGATAAAGTTATGGAGGAGACTAAAGATAAGAGGAATGCTGTGGAGTCTTATGTATATGATATGCGTAATAAGCTTTTTAACAAGTACCATAACTACGCAACTGAGTTTGAGCGGAAAGAACTTACTCAAAGGTTGCAGAATACTGAAGATTGGCTGTATGAAGAGGGTGACGATGAATCCAAAGGGGTATATGTAGCTAAGCTTGATGAACTCAAAAAGATTGGAGATCCCATAGAACAAAGATACAAGGAGGAAGAAGCCCGTGCAGCAGCAGTTAAGGGTTTACAATATTATATTAGAGAATACCGAAATGCAGCTATGCTAGGAGATACTGGGTTTCATCATATAGAAGCCAAAGACAAACGAAAGGTTATTCTGGAGTGTGATGATGCAGAAGCTTGGCTGACAGAGAAAAGCCAACAGCAGGATACCATTGCCAAGTGTGAAAACCCCATACTACTCTCTACTGACATTAGAAAAAGGACTGAGGCTTTAATGAGCATTTGCAATCCTATCTTCACAAAACCTAGGACTGGCCCATCAAAATCTTCTTCAAAAACAGGTGATGCAAAAGATTCAAAGCAGAACACATCTAGTGGAGGTGAACAATCATCAGAGCCAATGGACACTGACCAACCACAGGATCCTGTGAGCATGCAAACAGATTGA___GCGATTTAACTTCACACAAGGGCGCGATAAGGCTAGGAAATATGTTCCAGGATGGAATGACATGAGTTTTATATTGGTACCATGTTCAATACTTTACTTTGTAATTTGTACTAAGTCTGTTAATAGAATAGTAGGCTCTGCCTCTTACTTTCTGGGGTTGATACTAGTGCGAAGGGTGATCTTTCAGACTAATAATGTGTACTAGTTAAGCACAACTGATGTGGATGTGTTGGATTTTGTCTTTATCCACTCCACGTTCTAATGAAGAGTGTAGAGCTACTTAATGGAAAAAATAGTGTCCGTCACATTGTTTAGTGGGTTGATACCTATGGAGCATTGTCCTTGTCTCTCCAGAATAATAACATGTGCTAATGCACTTGTGGAGATGTAAACTGCACTCTGGCTATTGGGCCAAAGTTCTAACAAATATGTAATTAGAAAGCAATTTAGCATTTTTGAGTAAAATCCACCATGATAACTTATAGTGCAACTTCTGAATATCCTCCGGAGAAAGACAAATAGAGTAATATATCATGGCAACATTTCTCTTAGGGGCATTTCAATAGAGTCATTCTTGAAAAGCTTTGAACTTTCCTCTTGAAGACACCATTCAAAGATGGCATTTGTTGAGGAGCAAAAATTGATGCTATATATCTGGCATCTCCTTGAACATATGGCATTTTAAGTATAGAAGATTCAGGTAGGTTGAATGCAAGTACCATGTCTCTTGAAGCAAAACACTCTTTCTGGAGGATAATTGATTAGAGATAACTTTCTTTGAATTACAATATTCATTTCTTGTTGATTATTGATACAGTAGGGTGAATTGCAAATTTAAGAAATGGTTGTTGCTGTCCTACAGCTGTTGAAACTTGAAAGTTTGTAATCACAGTATTATTTATTTTTCAATACTCCTAGATAGAAATCATAGAAATCGTATATTATGCATTC

Fln Alignment:

Contig857___IGPFQASKPEKSKIKVILQLNLHGIVTVNSASLIEEEEVEYPITS----------TVVMETEK-NKDGGSMPDPSADATKINAVNGHGSTS----------PAVDHSQAELTKHEVVK-------KRTSIQVTVDMLGGLSQVERKKAKDKEDDLANQDKVMEETKDKRNAVESYVYDMRNKLFNKYHNYATEFERKELTQRLQNTEDWLYEEGDDESKGVYVAKLDELKKIGDPIEQRYKEEEARAAAVKGLQYYIREYRNAAMLGDTGFHHIEAKDKRKVILECDDAEAWLTEKSQQQDTIAKCENPILLSTDIRKRTEALMSICNPIFTKPRTGPSK---------SSSKTGDAKDSKQNTSSGGEQS--SEPMDTDQPQDPVS
C0PQU3_____________IGPFQTSKGEKAKLKVRVQLDKHGIVFVDSATMIEEEEIEVPVSSGKEGSKEDKETAAMETDDAQNNGASAAGDNADVNMQDAKSAAGTATAGTSGAENGFPEAEDKAAQMETDAKVKTVRKKKVKKTEVPINEKIFGALPRADLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTESQREELTLKLQTVEDWLYDEGEDETKGVYIAKLEELKKFGDPIEERYKEDMERGRSIDELMYCINSYRTAALSKDK-YDHIDIADKQKVVSECSEAETWLSDKKQQQDSLPKHANPLVLVADIRRKTETLDRFCRPIMTKPRPAPAKPPTQSPTQPQPSAEAQANENATNGATPEDQAPPAEPMETDNIQTPES

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
941	70		10		0.999998
1304	10		90		0.90298
1322		80		20	0.999996
1472			11	88	0.923564
1564	84		15		0.999986
1636	88			11	0.923564
1637	11			88	0.923564
1891	20	80			0.995493
1893		80	20		0.995493
1894		80		20	0.995493
1909		80		20	0.995493
1934		20		80	0.995493
1975	25			75	0.996473
1976		25		75	0.996473
1985		75	25		0.996473
2119	85			14	0.993533
2169		50		50	1.0
2176		87		12	0.992554
2262	63		36		1.0
2488		14		85	0.993533
2490		14		85	0.993533
2492	85			14	0.993533
2519	16	83			0.994512
2522		83		16	0.994512
2525	20			80	0.995493
2526	20	80			0.995493
2537		83		16	0.994512
2538		83	16		0.994512
2588		14	85		0.993533
2597		14	85		0.993533
2602	85			14	0.993533
2654	16		83		0.994512
2660	16		16		0.988813
2826	80	20			0.995493
2827		20		80	0.995493
2830	80			20	0.995493
2868	33	66			1.0
2869	28		71		1.0
2871		71	28		1.0
2948		75		25	0.996473
2982	25		75		0.996473
3408	25		75		0.996473
3448		50		50	1.0
3488	25	75			0.996473
3567	66		33		0.997452
3654	25			50	0.995533
3683	60		40		1.0
3693	75		25		0.996473
3698		50		50	1.0
3713	50		50		1.0
3834		80		20	0.995493
3842	20			80	0.995493
3848		25	75		0.996473
3855		75		25	0.996473
3864	25			75	0.996473
3865		25	75		0.996473
3866	75			25	0.996473
3873	66	33			0.997452
3874	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain