SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene847

Length: 2010 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene847
CCTCATAATTACTAAAGTTTGATTTCATTTTTTGGAAACATTGTTCAAAGCATTCCTCGGTTGTCATGCCCACATAAATTTAGGCACTAGCGGAGGCGATGGCCACGGCAACCATTCTCTCAAATTCTTCACTTGGGTCTAAATATTTCTTCCAAAACCAAAGTGGGCACTGCTCATATCCTTCACTGCAGAGGAAAAAACTGTTGGGTCATCCATTGCTGTTCCAAAAGTCTAGTAACAACATAGCTTTGTTCACAGACAAGAAGGCAATTTGCCGTAGAAGTATTAGCGGGGCCTCCAATTTGCAAGAATTGAGTATGGAAGAAGAATCTGAGAGTCCCGCCATAGAGTTCTCGACTGATTTAAGAGAACCCATCCTGGACATAAAGGCGCCTGCCCTAAAAGTGGGAGGTAAGTATGACAGGGAGCTTGAAGTTGCAGTGAAGGCAGTACAGTTGGCCTGTGTACTTTGCCAGCGTGTTCAGGATCGCCTCCTCAAAAATGAAGAAAGAGTTAACTCCAAAGATGATAACTCATTCGTTACAGTGGCAGACTGGAGTGTGCAAGCAGTTGTTAGCTGGGTATTGTCACATTCTCTCGCTGGTGAGCACATTTCTATGGTTGCAGAAGAAGATACTCAAGCACTAAGAGGAGTGGAAGGGATGGACTTACTCCATAGGGTGGTCAGCACTGTCAATGAGTGTCTTCGTGAGGCAGCTATTTTTGGGCTTAATCCTCCTCTGGAACCACTAGGAAGAGTTGATGTTCTTAAAGCTATCAACGAGGGGAGCTCCAAAGGTGGGTCAACTGGAAGACACTGGGTCTTAGATCCTGTAGATGGTACTCTTGGTTTTGTACGGGGAGATCAATATGCAGTAGCTCTTGCCATGATAGAGGAAGGAGAGGTGGTACTTGGAGTGCTGGGCTGCCCAAACTATCCATTGAGAAAAGAGTGGCTAAACTACCATCATCGATATTACCAACTCATGTTAAAACTATCCCCTCCAGGTTCTGGTGTATGGAGTAAAGGCTATGTACTTTCTACACAAAAGGGCAGTGGGCAAGTTTGGATGGAACCTTTAGTCAATGACATCATAAAGCTGGGATTGTCAAATGTAGCAAGGCCTGTTAGTGTCTCAGCCATTGATGATCCTGCACTGGCAACGTTCTGTGAACCAGTTGAAAAAGCAAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCACAGTTTAGGACTAAGTAATCATCCATTGCGTGTTTATAGTATGGCAAAATATGCTGCTATAGCTCGAGGTGATGCCGAGATATTCATGAAATTCGCAAGGGCAGGATACAAAGAAAAAATATGGGATCATGCAGCAGGAGTTCTTATTATACAAGAAGCAGGAGGCGTTGTGACTGATGCTGGTGGATCTCCACTAGACTTCTCAAAAGGGATTTACCTAGAAGGACTTGATAGAGGCATCATTGCGTGTTCCGGTGCCCGGCTTCATGAGAAAATTATTGCAGCAGTTGATGCAAGTTGGGATTCTTCAGAGCTGTGAACGATGTCATTGTTGCAGCTGGCAATTATGGATGTAGTCTCCATCTACCATATGATTCTTTTCATTCGTTAATATGAGATGGGGCTGAAGGATCTTATATTCTTGTTTGAAGAGTAAACTGTATTTGCCAGAGTAGTGAAAGGACATTTTGAATCCTGTAAATGCTTATCATGGATCAGACATATGCTTCCAAGACCATAAAGGTCTGGCAGCTTTCTATTGGAATGAAAGCTTCACTTATCTAAATGCATGTAAAGTGCTAGTGTGCCTTACCCAAGCTCGACAATTGTTACATGGAATTGATGTAAACATTTCTAGAGCTTCTTGAAAATGCAGGCTGGAAATGTCTAAAAAGTTTCTTTATCTTGCTGTCAAATATATCATGTATGCTTTTACTAGAAAAGTTACGTCGTCTATGTTCATCTCTTTAAATACTTAAAAAGTACCGCTTAATGTTATCTTGTCC

Ace file of the UniGene sp_v2.0_unigene847

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative PAP-specific phosphatase [Oryza sativa Japonica Group]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol-1,4-bisphosphate 1-phosphatase.	EC:3.1.3.57	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Inositol phosphate metabolism	00562		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Phosphatidylinositol signaling system	04070		79%
Blast2go	3'(2'),5'-bisphosphate nucleotidase.	EC:3.1.3.7	-	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	79%
Blast2go	inositol-1,4-bisphosphate 1-phosphatase activity	GO:0004441	Molecular Function	79%
Blast2go	3'(2'),5'-bisphosphate nucleotidase activity	GO:0008441	Molecular Function	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT90

Fln msg:

Fln protein: MATATILSNSSLGSKYFFHYRRGLCSYPSLQRKKLLGHPLLFQKSSNNIALFTDKKAICRRSISGASNLQELSMEEESESPAIEFSTDLREPILDIKAPALKVGGKYDRELEVAVKAVQLACVLCQRVQDRLLKNEERVNSKDDNSFVTVADWSVQAVVSWVLSHSLAGEHISMVAEEDTQALRGVEGMDLLHRVVSTVNECLREAAIFGLNPPLEPLGRVDVLKAINEGSSKGGSTGRHWVLDPVDGTLGFVRGDQYAVALAMIEEGEVVLGVLGCPNYPLRKEWLNYHHRYYQLMLKLSPPGSGVWSKGYVLSTQKGSGQVWMEPLVNDIIKLGLSNVARPVSVSAIDDPALATFCEPVEKANSSHSFTAGLAHSLGLSNHPLRVYSMAKYAAIARGDAEIFMKFARAGYKEKIWDHAAGVLIIQEAGGVVTDAGGSPLDFSKGIYLEGLDRGIIACSGARLHEKIIAAVDASWDSSEL*

Protein Length: 483

Fln nts: CCTCATAATTACTAAAGTTTGATTTCATTTTTTGGAAACATTGTTCAAAGCATTCCTCGGTTGTCATGCCCACATAAATTTAGGCACTAGCGGAGGCG_-_ATGGCCACGGCAACCATTCTCTCAAATTCTTCACTTGGGTCTAAATATTTCTTCCactACCgacGTGGGCtCTGCTCATATCCTTCACTGCAGAGGAAAAAACTGTTGGGTCATCCATTGCTGTTCCAAAAGTCTAGTAACAACATAGCTTTGTTCACAGACAAGAAGGCAATTTGCCGTAGAAGTATTAGCGGGGCCTCCAATTTGCAAGAATTGAGTATGGAAGAAGAATCTGAGAGTCCCGCCATAGAGTTCTCGACTGATTTAAGAGAACCCATCCTGGACATAAAGGCGCCTGCCCTAAAAGTGGGAGGTAAGTATGACAGGGAGCTTGAAGTTGCAGTGAAGGCAGTACAGTTGGCCTGTGTACTTTGCCAGCGTGTTCAGGATCGCCTCCTCAAAAATGAAGAAAGAGTTAACTCCAAAGATGATAACTCATTCGTTACAGTGGCAGACTGGAGTGTGCAAGCAGTTGTTAGCTGGGTATTGTCACATTCTCTCGCTGGTGAGCACATTTCTATGGTTGCAGAAGAAGATACTCAAGCACTAAGAGGAGTGGAAGGGATGGACTTACTCCATAGGGTGGTCAGCACTGTCAATGAGTGTCTTCGTGAGGCAGCTATTTTTGGGCTTAATCCTCCTCTGGAACCACTAGGAAGAGTTGATGTTCTTAAAGCTATCAACGAGGGGAGCTCCAAAGGTGGGTCAACTGGAAGACACTGGGTCTTAGATCCTGTAGATGGTACTCTTGGTTTTGTACGGGGAGATCAATATGCAGTAGCTCTTGCCATGATAGAGGAAGGAGAGGTGGTACTTGGAGTGCTGGGCTGCCCAAACTATCCATTGAGAAAAGAGTGGCTAAACTACCATCATCGATATTACCAACTCATGTTAAAACTATCCCCTCCAGGTTCTGGTGTATGGAGTAAAGGCTATGTACTTTCTACACAAAAGGGCAGTGGGCAAGTTTGGATGGAACCTTTAGTCAATGACATCATAAAGCTGGGATTGTCAAATGTAGCAAGGCCTGTTAGTGTCTCAGCCATTGATGATCCTGCACTGGCAACGTTCTGTGAACCAGTTGAAAAAGCAAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCACAGTTTAGGACTAAGTAATCATCCATTGCGTGTTTATAGTATGGCAAAATATGCTGCTATAGCTCGAGGTGATGCCGAGATATTCATGAAATTCGCAAGGGCAGGATACAAAGAAAAAATATGGGATCATGCAGCAGGAGTTCTTATTATACAAGAAGCAGGAGGCGTTGTGACTGATGCTGGTGGATCTCCACTAGACTTCTCAAAAGGGATTTACCTAGAAGGACTTGATAGAGGCATCATTGCGTGTTCCGGTGCCCGGCTTCATGAGAAAATTATTGCAGCAGTTGATGCAAGTTGGGATTCTTCAGAGCTGTGA___ACGATGTCATTGTTGCAGCTGGCAATTATGGATGTAGTCTCCATCTACCATATGATTCTTTTCATTCGTTAATATGAGATGGGGCTGAAGGATCTTATATTCTTGTTTGAAGAGTAAACTGTATTTGCCAGAGTAGTGAAAGGACATTTTGAATCCTGTAAATGCTTATCATGGATCAGACATATGCTTCCAAGACCATAAAGGTCTGGCAGCTTTCTATTGGAATGAAAGCTTCACTTATCTAAATGCATGTAAAGTGCTAGTGTGCCTTACCCAAGCTCGACAATTGTTACATGGAATTGATGTAAACATTTCTAGAGCTTCTTGAAAATGCAGGCTGGAAATGTCTAAAAAGTTTCTTTATCTTGCTGTCAAATATATCATGTATGCTTTTACTAGAAAAGTTACGTCGTCTATGTTCATCTCTTTAAATACTTAAAAAGTACCGCTTAATGTTATCTTGTCC

Fln Alignment:

Contig847___SNSSLG--SKYFFHYRRGLCSYPSLQRKKLLGHPLLFQKSSNNIALFTDKKAICRRSISGASNLQXXXXXXXXXXPAIEFSTDLREPILDIKAPALKVGGKYDRELEVAVKAVQLACVLCQRVQDRLLKNEERVNSKDDNSFVTVADWSVQAVVSWVLSHSLAGEHISMVAEEDTQALRGVEGMDLLHRVVSTVNECLREAAIFGLNPPLEPLGRVDVLKAINEGSSKGGSTGRHWVLDPVDGTLGFVRGDQYAVALAMIEEGEVVLGVLGCPNYPLRKEWLNYHHRYYQLMLKLSPPGSGVWSKGYVLSTQKGSGQVWMEPLVNDIIKLGLSNVARPVSVSAIDDPALATFCEPVEKANSSHSFTAGLAHSLGLSNHPLRVYSMAKYAAIARGDAEIFMKFARAGYKEKIWDHAAGVLIIQEAGGVVTDAGGSPLDFSKGIYLEGLDRGIIACSGARLHEKIIAAVDASWDSSEL
C0PT90_____________SNPSVGFGSAYFFQNPSGCCLFPPLQRKKLLDHQLLFQKPRNNIALFTDRKAICSSGISRASHLKELSMEEESESPAREFSTDLRDPILNIRSPALKVGGMYDRELEVAVKAVQLACVLCQRVQDRLLKNEEKVNSKDDNSFVTVADWSVQAVVSWVLSHSLASEHISMIAEEDTQALRGVEGMDLLHRVVSTVNECLSEAAIFGLNPPLEPLGTVDVLKAINKGSSKGGPTGRHWVLDPVDGTLGFIRGDQYAVALAMIEEGEVVLGVLGCPNYPLRREWLNYHYRYYQLMLKLSPPGSGVWSKGYVLSTQKGSGQVWMEPLVNDIIKLGLSNVARPVSVSAIDDPALATFCEPVEKANSSHSFTAGLAHSLGLSNHPLRVYSMAKYAAIARGDAEIFMKFARAGYKEKIWDHAAGVLIIQEAGGVVTDAGGSPLDFSKGIYLEGLDRGIVACSGARLHEKIIAAVDASWDSSEL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1630			83	16	0.994512
1632	16		83		0.994512
1633	16	16			0.988813
1636	16		16		0.988813
1638	83	16			0.994512
1639	83			16	0.994512
1641		16	83		0.994512
1645	16			83	0.994512
1663	80		20		0.995493
1913		25		75	1.0
1945	16			83	0.994512
1999	25		75		0.996473
2003	66			33	0.997452
2004	75			25	0.996473
2005		33		66	0.997452
2007		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain