SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene846

Length: 2499 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene846
CGTCGTGACCTTGGCTGTCACTCAATCTTTCTCTATTATTTTATCAGGTCCTCTTCGGCGCAATATCGAATTTCATCGCCACAAGGAGATCGCATTTTGATTCTGGCAACCTAGTCAGCTGTTCGGACAGCACGAGTTCCCGTCTGTTTGTTGACAGAAACTATCGCTGTTCGGGCCCTTTTAGAATCTTCAATATTCAAGAGAAGCAGAGCCAAAGAAAGAAAGCGGAGGATTCCTTTCTATCACTCTCTCTGTTTTGCCGTGACGGGATCCGGCTGTTTGGGCCTGTATGCCGGATACCCAGATGGCAATTGGGCCGTTGATCACATGACCTTATTTGAGATCCACTAGTCTATTTCTCCCTCAACTTTCTGTTCTATGCGTGGAGTCTAACTGAACACCCAAGAGCTCTGCGTTGGCCATGCGACTCTGGATCGGTGCAACGCCCCCTTCGAGAGAGGCCCTTTCCTTCAAACAAAACTATTCACACAAATATCTTTTTTTTTTCCAAACTTCATTAGACTTTCTGACGTTTCAAAATGACCGGAGGAGAATCCGAAGTCCGTAATGCCAGAGAGATTTTCTTCAATGCCGCTGCTGGAGCTGGAGCAGGAGCTATTGCGGCCACATTTGTATGCCCACTTGATGTTATCAAGACACGGCTGCAAGTACATGGGCTACCTAAACATGGTCAGAGTGGTTTAAAAGGAGGCCTTGTTGTTGGTAGCCTAGAGAGAATATACCATGAAGAAGGTTTTCGGGGTTTGTACCGTGGACTTTCACCAACAATTATAGCATTACTTCCAAATTGGGCGGTGTACTTTACTGTATATGGTCAATTGAAAAAGTTTTTACAACAACAAAAAGATGCGGGTGAAGAAATTTCAGTAGGAGCCAATATGATAGCTGCAGCAGGTGCAGGAGCTGCTACATCCATAGTGACCAATCCTCTGTGGGTTGTAAAGACCAGGCTTCAGACACAAGGAATGAGGCCTGAAGTTGTACCATACAAAAGCACTCTTTCTGCTTTAAGTAGAATTGCTCAAGAAGAGGGAATACGAGGGTTTTATAGTGGTCTTGTGCCTGCTCTGGCAGGAGTAAGTCATGTCGTGATCCAGTTTCCTTTATATGAGAAGATTAAGTCATACTTGGCAAAACGGGGTGGGACTACCCCAGACAAGCTTGGTCCAGTTGATGTTGCCGTTGCCTCCTCAGTGTCTAAAGTAATAGCATCAACAATGACTTATCCACACGAGGTTGTGCGCTCGAAGCTTCAGGAACAAGGCCATGCAAGGGATTCAGAAGTACGATATACAGGTGTAACTGATTGTGTTAAAAAGGTATTCCGTAGGGAGGGAATTAATGGATTTTATCGGGGCTGTGCGACAAACCTGATGAGGACTACACCAGGTGCTGTAATAACCTTGTGTAGTTTTGAGATGATTTTGAGGGTTTTGCACAATTTATATCCATCTGAACCTGCATCGAGTCCATCTGGCTTTCATTCCGATGCTGAAGAACCAGAGGAGCAGTCAAGCACTCGTGGAGTGAAGCGAGAAGATGATTCTGTTTTTAGATCTTCATCTCACCAAGCAACACCCAAGATGAATTCATTATCCTTGACTAAAAAGGATCAATTAACTGCAAGACATTAATTTCAACTTCTAATTCTGATATGATTTTTGGTCCATTGGCCGAGTATCAAAATGGCTTGGCCGGGGGACAAAAATTTTCAGGCATTTTGTATAATACTGGCCAGGAACATTTACAACGATCATTGATGTTGATAAGCACTGGTCTTTGTCGTATCTATTTGTTTCCTATTCAATTGGATTGGAGAAGAGATGGTATCCAATCAATGATCAATATTTCATTCCTGCTATATTATTTAAACGTTATTTGTCCTCAATATCTTTGTAACTGGCCGTGGCAGCGTCTTGAACTCATGTTTTCTCCAGGGTTTTTGTTTATCACTGGGTAATTATAATTCTATTAAGGGAAATGTTTTCCTTGTATTCCTTATCCGGCTAGTTATACTGGAGTGGCAAATGAAAAAGAACTGGGGCAGCTGGTACGCTTTTGGCCATCCTTTTGTTTACCGCAGGTCAATTCTTCTATATAAAATCTATCGGAGGCCTGTTTGCCAGTGAACTTCCATCATTTTGAAGCTGTCTGATCCGGATCCATCGTGCAATCGAAGAGAAATGCATTTTTTACCTCTATGCGCCTTGGAAAAATGGGGCAGGCCCTCTACGTACCGGCTTGTCAGTGTGAACTTCATTATTTTGAAGACGTCTATGGAATTCTATCTCGCTTGCAATTCAAATGAAATGCATTAGTTCACCTCTATGTCTTACAAAAAATGGCAGCCTGCTCATATGCCCTCGACTGTACAACTTATTTGGTTTTCATGGTCCGTGATAATATGACATTGGTAGATACTTGTAATACGAATTATAAGGAATTATTTGTTAATTAATAGACTCAATATTTATACAC

Ace file of the UniGene sp_v2.0_unigene846

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAD+ transporter 2 [Arabidopsis thaliana] gb\|AAM13231.1\| unknown protein [Arabidopsis thaliana] gb\|AAP42759.1\| At1g25380 [Arabidopsis thaliana] emb\|CAR70089.1\| mitochondrial nicotinamide adenine dinucleotide transporter 2 [Arabidopsis thaliana] gb\|AEE3061	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	mitochondrial carrier	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	76%
Blast2go	NAD transport	GO:0043132	Biological Process	76%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	76%
Blast2go	binding	GO:0005488	Molecular Function	76%
Blast2go	NAD transporter activity	GO:0051724	Molecular Function	76%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	76%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P061

Fln msg: your sequence is longer than subject: 372 - 301

Fln protein: MTGGESEVRNAREIFFNAAAGAGAGAIAATFVCPLDVIKTRLQVHGLPKHGQSGLKGGLVVGSLERIYHEEGFRGLYRGLSPTIIALLPNWAVYFTVYGQLKKFLQQQKDAGEEISVGANMIAAAGAGAATSIVTNPLWVVKTRLQTQGMRPEVVPYKSTLSALSRIAQEEGIRGFYSGLVPALAGVSHVVIQFPLYEKIKSYLAKRGGTTPDKLGPVDVAVASSVSKVIASTMTYPHEVVRSKLQEQGHARDSEVRYTGVTDCVKKVFRREGINGFYRGCATNLMRTTPGAVITLCSFEMILRVLHNLYPSEPASSPSGFHSDAEEPEEQSSTRGVKREDDSVFRSSSHQATPKMNSLSLTKKDQLTARH*

Protein Length: 373

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTTCTCTATTATTTTATCAGGTCCTCTTCGGCGCAATATCGAATTTCATCGCCACAAGGAGATCGCATTTTGATTCTGGCAACCTAGTCAGCTGTTCGGACAGCACGAGTTCCCGTCTGTTTGTTGACAGAAACTATCGCTGTTCGGGCCCTTTTAGAATCTTCAATATTCAAGAGAAGCAGAGCCAAAGAAAGAAAGCGGAGGATTCCTTTCTATCACTCTCTCTGTTTTGCCGTGACGGGATCCGGCTGTTTGGGCCTGTATGCCGGATACCCAGATGGCAATTGGGCCGTTGATCACATGACCTTATTTGAGATCCACTAGTCTATTTCTCCCTCAACTTTCTGTTCTATGCGTGGAGTCTAACTGAACACCCAAGAGCTCTGCGTTGGCCATGCGACTCTGGATCGGTGCAACGCCCCCTTCGAGAGAGGCCCTTTCCTTCAAACAAAACTATTCACACAAATATCTTTTTTTTTTCCAAACTTCATTAGACTTTCTGACGTTTCAAA_-_ATGACCGGAGGAGAATCCGAAGTCCGTAATGCCAGAGAGATTTTCTTCAATGCCGCTGCTGGAGCTGGAGCAGGAGCTATTGCGGCCACATTTGTATGCCCACTTGATGTTATCAAGACACGGCTGCAAGTACATGGGCTACCTAAACATGGTCAGAGTGGTTTAAAAGGAGGCCTTGTTGTTGGTAGCCTAGAGAGAATATACCATGAAGAAGGTTTTCGGGGTTTGTACCGTGGACTTTCACCAACAATTATAGCATTACTTCCAAATTGGGCGGTGTACTTTACTGTATATGGTCAATTGAAAAAGTTTTTACAACAACAAAAAGATGCGGGTGAAGAAATTTCAGTAGGAGCCAATATGATAGCTGCAGCAGGTGCAGGAGCTGCTACATCCATAGTGACCAATCCTCTGTGGGTTGTAAAGACCAGGCTTCAGACACAAGGAATGAGGCCTGAAGTTGTACCATACAAAAGCACTCTTTCTGCTTTAAGTAGAATTGCTCAAGAAGAGGGAATACGAGGGTTTTATAGTGGTCTTGTGCCTGCTCTGGCAGGAGTAAGTCATGTCGTGATCCAGTTTCCTTTATATGAGAAGATTAAGTCATACTTGGCAAAACGGGGTGGGACTACCCCAGACAAGCTTGGTCCAGTTGATGTTGCCGTTGCCTCCTCAGTGTCTAAAGTAATAGCATCAACAATGACTTATCCACACGAGGTTGTGCGCTCGAAGCTTCAGGAACAAGGCCATGCAAGGGATTCAGAAGTACGATATACAGGTGTAACTGATTGTGTTAAAAAGGTATTCCGTAGGGAGGGAATTAATGGATTTTATCGGGGCTGTGCGACAAACCTGATGAGGACTACACCAGGTGCTGTAATAACCTTGTGTAGTTTTGAGATGATTTTGAGGGTTTTGCACAATTTATATCCATCTGAACCTGCATCGAGTCCATCTGGCTTTCATTCCGATGCTGAAGAACCAGAGGAGCAGTCAAGCACTCGTGGAGTGAAGCGAGAAGATGATTCTGTTTTTAGATCTTCATCTCACCAAGCAACACCCAAGATGAATTCATTATCCTTGACTAAAAAGGATCAATTAACTGCAAGACATTAA___TTTCAACTTCTAATTCTGATATGATTTTTGGTCCATTGGCCGAGTATCAAAATGGCTTGGCCGGGGGACAAAAATTTTCAGGCATTTTGTATAATACTGGCCAGGAACATTTACAACGATCATTGATGTTGATAAGCACTGGTCTTTGTCGTATCTATTTGTTTCCTATTCAATTGGATTGGAGAAGAGATGGTATCCAATCAATGATCAATATTTCATTCCTGCTATATTATTTAAACGTTATTTGTCCTCAATATCTTTGTAACTGGCCGTGGCAGCGTCTTGAACTCATGTTTTCTCCAGGGTTTTTGTTTATCACTGGGTAATTATAATTCTATTAAGGGAAATGTTTTCCTTGTATTCCTTATCCGGCTAGTTATACTGGAGTGGCAAATGAAAAAGAACTGGGGCAGCTGGTACGCTTTTGGCCATCCTTTTGTTTACCGCAGGTCAATTCTTCTATATAAAATCTATCGGAGGCCTGTTTGCCAGTGAACTTCCATCATTTTGAAGCTGTCTGATCCGGATCCATCGTGCAATCGAAGAGAAATGCATTTTTTACCTCTATGCGCCTTGGAAAAATGGGGCAGGCCCTCTACGTACCGGCTTGTCAGTGTGAACTTCATTATTTTGAAGACGTCTATGGAATTCTATCTCGCTTGCAATTCAAATGAAATGCATTAGTTCACCTCTATGTCTTACAAAAAATGGCAGCCTGCTCATATGCCCTCGACTGTACAACTTATTTGGTTTTCATGGTCCGTGATAATATGACATTGGTAGATACTTGTAATACGAATTATAAGGAATTATTTGTTAATTAATAGACTCAATATTTATACAC

Fln Alignment:

Contig846___PLDVIKTRLQVHG-----LPKHXXXXXXXXXXXXXXERIYHEEGFRGLYRGLSPTIIALLPNWAVYFTVYGQLKKFLQQQKDAGEEISVGANMIXXXXXXXXTSIVTNPLWVVKTRLQTQ----GMRPEVVPYKSTLSALSRIAQEEGIRGFYSGLVPALAGVSHVVIQFPLYEKIKSYL-------AKRGGTTPDK-LGPVDXXXXXXXXXXXXXTMTYPHEVVRSKLQEQGHARDSEVRYTGVTDCVKKVFRREGINGFYRGCATNLMRTTPGAVITLCSFEMILRVLH
A9P061_____________PLDVVRTRFQVNDGRYTQLPYYKNTAHALFS-------IGRAEGLKGLYAGFYPAVLGSSLSWGLYFFFYSRAKH--RYQKGTEEHLGPGLHLASAAEAGALVCLFTNPVWLVKTRLQIQTPGSGARQ---PYSGFLDALRTILRDEGWRAFYKGLGPSLLLVSHGAIQFTTYEEARKFVITLRNKQRKDDNIVGDKALTSVDYAALGALSKFFAALLTYPYQVIRARVQQRPNT-DGLPKYRDSYHAFKETLRFEGIRGLYKGIGPNLLKNVPASSITFLVYESVLRFLN

SNPs (tot: 4)

Position	A %	C %	T %	Probability
1698		25	75	0.996473
2139	9	90		0.999842
2316		84	16	1.0
2364	88		11	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain