SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene836

Length: 2054 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene836
ACTTAGATAGTTTGCAAGTTCGCCCTCCTGTTCTGACAATACTGGGCCATGTGGACCATGGAAAGACGACTCTGTTGGATTATATCAGGAAGACAAAGGTGGCTGCCTCTGAAGCTGGAGGCATTACACAAGGAATTGGAGCATATAGAGTGCTTGTGCCTGTGGATGACAAAGTTAAACCATGCGTTTTTCTTGATACACCTGGTCACGAGGCATTCAGTGCCATGAGAGCACGTGGAGCAAGAGTGACTGATATTGCCATCATAGTGGTTGCTGCGGATGATGGAGTTCGCCCTCAAACAAATGAAGCTATAGCCCATGCCAAGGCTGCCAATGTGCCAATTGTTATAGCAATCAATAAGATAGATAAGGAGGGAGCAAGCCCAGAACGGGTTATGCAAGAACTCTCTGCCCTTGGATTAATGCCGGAGGAATGGGGTGGTGATGTACCTATGATTCAAGTTAGTGCCCTAACTGGCCAAAATGTGGATGAACTGCTAGAGACTGTCATGCTGGTTGCAGAGTTGCAAGAGTTGAAGGCCAATCCAGATCGAAATGCGAAAGGCACTGTCATTGAAGCACGCCTTCACAAGTCAAGAGGACCACTAGCCACTTTTCTTGTGCAGAATGGTACTCTCAAAAAGGGTGATGTGGTGGTGTGTGGTGAAGCATTTGGGAAGGTACGGGCTTTGCTTGATGACAGTGGAGCCCGTCTTGAGGAAGCTGGGCCCTCCTTAGCTGTGCAGGTTATTGGATTGAATAATGTTCCTACTGCTGGTGATGAGTTTGAGGCTGTTGATTCACTTGAGGTTGCTCGTGAAAGAGCAGAGGAATGTGCTATTAAGTTAAGAGATGCACGGATATCTGCTAAGGCTGGCGAGGGAAAAGTTACTCTCTCTTCCCTTGCTAATGCTGTTGCACAACACAACGAGACTGGTGTAGAAAGGCACCAGTTGAATATTGTTTTAAAGGTTGATGTTCAGGGATCAGTGGAGGCAATCAGGGATGCTCTACAAGTACTTCCACAAGATAGTGTTTATCTACGATTCTTAATGCAAGCAGTTGGGGATATAAGTGCTAGTGATATCGACCTTGCCCGTGCTAGTGAGGCCATTATTGTAGGATTCAATGTTGGAGTGCCTACAGCTGTTCAGGCTCATGCTGAAAACAGAAATGTTGAAATTCGCTTGTACAGAGTCATCTATGAGCTTGTTGATGATATGCGTAAGGCAATGGAGGGGCTTTTAGAACTAACGGAGGAGCAAGTACCTATTGGAGCTGCAGCAGTGAGAGCCATCTTCAGCAGTGGCAGTGGGCGTGCTGCTGGATGTATGGTGACTGAAGGAAAAATAGTGAAAGGCTGTGGTGTTAGGGTTGTTCGCAAGGGTAAAACTGTTTATGTAGGCAAACTTGATTCGTTGAGAAGGGTCAAAGAGGTTGTCAAAGAGATAGGCGCAGGGCTGGAGTGTGGAATTGCTGTGAAAGACTTTGATGATTGGGATGCTGGAGACACAATTGAAGCTTTCTATTCTGTAGCTAAGCAGCGCACTCTTGAAGAGGCATCTGTTACCATGGCAGCTGTGGTTGCTGCTAGTGGAGTTCAACAATAGGGACCACCTGTTGGACTAGGTACATAAATTCCCTTACAAAGCACATCTGAGGGAGTGCGTTTTCTTGTCCATATGCCAAATGTACTTGACATTCGTGTCATATTGGTTCCCTCAATTTAAGGTAAAAAGTATTTCAACCACAAATTCAGTAACGTCAAGTTACTGTATATTTCATTTGTACAAGTTACATTGGGCAAAATGTGTTACAACATCGCCTATTGGTTTTAACGTTATTTATTCTTTACTTCAAAATGTTCGATCTTCATTTTTGCACATTATACATGGGGGTTTATCTCATTGTACAGAGTTTTCAACTCTCAGAAGATAGAAATTAACCGAGTGTACTGTTTCCAAGAAGTTAACTTTGGCAGATGTGGCAAATAAACGATTTATGAAATAACCTTTCACATCCTGTGGATGTTTTGGTAGAGTTTCATTATTGAT

Ace file of the UniGene sp_v2.0_unigene836 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translation initiation factor IF-2 n=1 Tax=Ricinus communis RepID=B9T3K8_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	translation initiation factor if-2	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	86%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	86%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	86%
Blast2go	GTPase activity	GO:0003924	Molecular Function	86%
Blast2go	GTP binding	GO:0005525	Molecular Function	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor aIF-2, bacterial-like	IPR000178	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation initiation factor IF-2, N-terminal	IPR006847	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTN8

Fln msg:

Fln protein: MYLTFVSYWFPQFKVKSISTTNSVTSSYCIFHLYKLHWAKCVTTSPIGFNVIYSLLQNVRSSFLHIIHGGLSHCTEFSTLRR*

Protein Length: 84

Fln nts: ACTTAGATAGTTTGCAAGTTCGCCCTCCTGTTCTGACAATACTGGGCCATGTGGACCATGGAAAGACGACTCTGTTGGATTATATCAGGAAGACAAAGGTGGCTGCCTCTGAAGCTGGAGGCATTACACAAGGAATTGGAGCATATAGAGTGCTTGTGCCTGTGGATGACAAAGTTAAACCATGCGTTTTTCTTGATACACCTGGTCACGAGGCATTCAGTGCCATGAGAGCACGTGGAGCAAGAGTGACTGATATTGCCATCATAGTGGTTGCTGCGGATGATGGAGTTCGCCCTCAAACAAATGAAGCTATAGCCCATGCCAAGGCTGCCAATGTGCCAATTGTTATAGCAATCAATAAGATAGATAAGGAGGGAGCAAGCCCAGAACGGGTTATGCAAGAACTCTCTGCCCTTGGATTAATGCCGGAGGAATGGGGTGGTGATGTACCTATGATTCAAGTTAGTGCCCTAACTGGCCAAAATGTGGATGAACTGCTAGAGACTGTCATGCTGGTTGCAGAGTTGCAAGAGTTGAAGGCCAATCCAGATCGAAATGCGAAAGGCACTGTCATTGAAGCACGCCTTCACAAGTCAAGAGGACCACTAGCCACTTTTCTTGTGCAGAATGGTACTCTCAAAAAGGGTGATGTGGTGGTGTGTGGTGAAGCATTTGGGAAGGTACGGGCTTTGCTTGATGACAGTGGAGCCCGTCTTGAGGAAGCTGGGCCCTCCTTAGCTGTGCAGGTTATTGGATTGAATAATGTTCCTACTGCTGGTGATGAGTTTGAGGCTGTTGATTCACTTGAGGTTGCTCGTGAAAGAGCAGAGGAATGTGCTATTAAGTTAAGAGATGCACGGATATCTGCTAAGGCTGGCGAGGGAAAAGTTACTCTCTCTTCCCTTGCTAATGCTGTTGCACAACACAACGAGACTGGTGTAGAAAGGCACCAGTTGAATATTGTTTTAAAGGTTGATGTTCAGGGATCAGTGGAGGCAATCAGGGATGCTCTACAAGTACTTCCACAAGATAGTGTTTATCTACGATTCTTAATGCAAGCAGTTGGGGATATAAGTGCTAGTGATATCGACCTTGCCCGTGCTAGTGAGGCCATTATTGTAGGATTCAATGTTGGAGTGCCTACAGCTGTTCAGGCTCATGCTGAAAACAGAAATGTTGAAATTCGCTTGTACAGAGTCATCTATGAGCTTGTTGATGATATGCGTAAGGCAATGGAGGGGCTTTTAGAACTAACGGAGGAGCAAGTACCTATTGGAGCTGCAGCAGTGAGAGCCATCTTCAGCAGTGGCAGTGGGCGTGCTGCTGGATGTATGGTGACTGAAGGAAAAATAGTGAAAGGCTGTGGTGTTAGGGTTGTTCGCAAGGGTAAAACTGTTTATGTAGGCAAACTTGATTCGTTGAGAAGGGTCAAAGAGGTTGTCAAAGAGATAGGCGCAGGGCTGGAGTGTGGAATTGCTGTGAAAGACTTTGATGATTGGGATGCTGGAGACACAATTGAAGCTTTCTATTCTGTAGCTAAGCAGCGCACTCTTGAAGAGGCATCTGTTACCATGGCAGCTGTGGTTGCTGCTAGTGGAGTTCAACAATAGGGACCACCTGTTGGACTAGGTACATAAATTCCCTTACAAAGCACATCTGAGGGAGTGCGTTTTCTTGTCCATATGCCAA_-_ATGTACTTGACATTCGTGTCATATTGGTTCCCTCAATTTAAGGTAAAAAGTATTTCAACCACAAATTCAGTAACGTCAAGTTACTGTATATTTCATTTGTACAAGTTACATTGGGCAAAATGTGTTACAACATCGCCTATTGGTTTTAACGTTATTTATTCTTTACTTCAAAATGTTCGATCTTCATTTTTGCACATTATACATGGGGGTTTATCTCATTGTACAGAGTTTTCAACTCTCAGAAGATAG___AAATTAACCGAGTGTACTGTTTCCAAGAAGTTAACTTTGGCAGATGTGGCAAATAAACGATTTATGAAATAACCTTTCACATCCTGTGGATGTTTTGGTAGAGTTTCATTATTGAT

Fln Alignment:

Contig836___MYLTFVSYWFPQFKVKSISTTNSVTSSYCIFHLYKLHWAKCVTTSPIGFNVIYSLLQNVRSSFLHIIHGGLSHCTEFSTL
A9NTN8_____________MYWTFVSYWFPQVKVKSNSITNSVMSSYCIFHLYKLHWAKCVTTSPIGFNVIYSFLQNVQSSFFHIICGGLSPCTEFSTL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1308	90		10		0.90298
1310		90	10		0.90298
1320		10		90	0.90298
1327		11	88		0.923564
1329	11		77		0.968132
1331		88	11		0.923564
1417	25			75	0.996473
1469	12			87	0.992554
1470		12	87		0.992554
1472	87			12	0.992554
1473			87	12	0.992554
1563			83	16	0.994512
1566	16	83			0.994512
1569		83	16		0.994512
1673			83	16	0.994512
1693	20			80	0.995493
1696		80	20		0.995493
1837	80		20		0.995493
1892		20		80	0.995493
1893	20	80			0.995493
1894		80		20	0.995493
1895	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain