SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene789

Length: 1848 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene789

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bZIP_2 domain containing protein	-	-	4.0e-10	35%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Blast2go	protein	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to zinc ion	GO:0071294	Biological Process	62%
Blast2go	DNA binding	GO:0003677	Molecular Function	62%
Blast2go	protein binding	GO:0005515	Molecular Function	62%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A5C0C1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 49 aas, putative chimeric sequence, your sequence is shorter than subject: 212 - 260

Fln protein: MAMDNGELEFSDEAFPNSDHATGFPMISSLDTILDDATETKTHTCTHTHTCNPPGRDKPHTHTCYHSHTQFFSTEQADQLGGTSESLAKKKRPSGNREAVKKYREKQKAHTAYLEDKVQKLRSLNQQLWRKVQDQVALEAEAERLRAILFEFKGKIDSELGSVPYQKPCSGNVKGGDCSVQPLNGDHNLRCETDVPCFHPPF*MSKTDNDS*

Protein Length: 213

Fln nts: GAAATTTGAAAGTGAAACAGAAGAATGTATGGGCAATCAAATTCCCCATGAGAATTGGCAGCAGCACCTTTCAACTAATTCCGTGGACTTCACACCAGATATTCTGAGAATTTACAGATGAGTCTAGAGCCGCTCTCCTACTCAGGTTTTTTCATTTAATGTGTTCCGGCATCTAGCGATGAGAGATTGAC_-_ATGGCAATGGACAACGGAGAGCTCGAGTTCTCTGATGAAGCCTTTCCTAATTCTGACCATGCTACCGGCTTTCCCATGATTTCATCCTTGGATACCATTCTGGATGACGCTACGGAGACAAAAACACACACTTGCACCCACACTCATACTTGCAATCCCCCAGGACGCGACAAACCACATACTCATACTTGTTATCACAGCCATACCCAATTTTTCTCTACAGAGCAAGCAGATCAATTGGGTGGGACATCAGAGTCATTGGCAAAGAAGAAAAGGCCTTCTGGAAACCGAGAAGCGGTCAAAAAGTACAGAGAGAAGCAAAAAGCACATACTGCTTATTTAGAAGATAAAGTGCAAAAGTTGCGTTCATTAAACCAGCAGCTATGGAGGAAGGTACAAGACCAGGTAGCCCTTGAGGCTGAGGCGGAAAGATTGAGGGCAATTTTATTTGAATTCAAGGGAAAAATAGATTCCGAGTTAGGCTCAGTTCCTTATCAAAAGCCATGTAGTGGAAATGTGAAAGGGGGAGACTGCAGTGTTCAACCGCTTAATGGTGATCACAATCTTCGTTGTGAAACTGACGTGCCTTGCTTTCATCCACCTTTTTAAATGTCTAAGACTGATAATGATTCCTAG___GTGGTCAAAATGATAATATAATGATATATGAGATAGTTTGAGAAATTACTAATTCTGAGCATTAAGTATTTACTCTGGATGGAGATTTGGGGCAGTACTGTTTAAGACCGAAAGGTATAGAGACAAGTGATTTTATGGTAACTAAAACTATGTCTTCGACAGAGAATCTGACCATGCATACAGGATTTGTCTTTGGGTAGCAGCATTGGAAGTATTAGCTCTGTTTAATTGAAGAATTTGTAAATAATAGAAGTAGAGATCCATGTGAAACATGTTTCAAATGAGGTAACGTTGCTGCAGTCCATCCCAACTTAGTTCTGTGAATAACAAAACCTACAAAACCTCAGAGGATATGCCCAGAAGGAAAGGTTGACATTCTTACAAGGGTACCTGTATATCAAGGATTCTTTACAAGTATAGTGGAAGCTTTGAATGCTACTATGTACTCAACAGGGAATCTCATCACACATACAGGATTGGTCTCTGAGTAGCAGCATTTGAGTATTGGCTTTGTTTAAATGTAAAATCTCTAAATAATAGAAGGTAATGAAGAGGAAAAATGTTGTGCCAGTCTAAGCCAACTAATCAATGAATAACAAAATCTTGGAGCATATGCCTAGATGGAAAGTTTGATATTCTTAAAATGGTACTTGGATATCAATGACTCTTTCCATGTATAATGCTACTAGCTCTGTGGAGCCTGTATTTACTGTTGAAATGTGCAACATGAAAAGTAGATCCTTTACTTTTGGCAGAGCAGCATCAGAAACAAAGCAATGTGGAAGAGACATGAAAAGTAGATCAGGTTGGTATCTTCTTTTAACCCATTGATACAGTTGACACATGTATCTGTATGTATCCTAGTGTATATCCGGTTTGCCATATGTTCACCTTTACTGATATTAGTGGGATTATTGAGAGAAAGAGATACTTGGGAGGTGAGATTGAAAGTATATACTAGTATTTTGAACTGCCATGTATTTATTAATTTTGATGGTGCAATTGTGTAAATTCAGAGTGT

Fln Alignment:

Contig789___MDNGELEFSDEAF-PNSDHATGFPMISSLDTILDDAXXXXXXXXXXXXXCNPPGRDKPHTHTCYHSHTQFFSTEQADQLGGTSESLAKKKRPSGNREAVKKYREKQKAHTAYLEDKVQKLRSLNQQLWRKVQDQVXXXXXXXXXXXILFEFKGKIDSELGSVPYQKPCSGNV--KGGDCSVQPLNGDHNLRCETDVPCFHPPF*MSKTDNDS*VVKMII
A5C0C1_____________MDDGEVELSDHVLLSNPNSSSNFQGSTPIDSFLDD-FLKNTRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFASEEDEVPNNKEHXISKVRRPSGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVKKLQGQAVLEAEVLRLRSLLLDLRGKIDNELGVFPFQKQCNTTLSFKEGDCGLQSASGAIDPRCEMDLPCFHPHVGSSSQASISGSGKMVV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1388	75			25	0.996473
1389	25			75	0.996473
1405	14		85		0.993533
1406		85		14	0.993533
1407		85	14		0.993533
1408	85			14	0.993533
1768	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain