SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene778

Length: 1903 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene778

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] gb\|AEE82370.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	aaa-type atpase family protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWQ8

Fln msg: your sequence is longer than subject: 494 - 398

Fln protein: MLRGFILPSFTVAAKGQQVAIRFQVPPSCDLSHLIVDVVSRLGLKTDESGGGSEMILHAWDSAVARQLILIHPDQSIPKGVETDPKVDNSQEPLRHRATNGNNICVLVFEPLIGSNNAEIEFLKRGPFSVKEFDALISALRIASGNTNERRAVQKKHRDAPKQRDRQNTGPNVSSNGNALEALEGMGVKIYGLEATYGSSDKDAVSWDNIAGYYEQKREIEDTVLLALRQPEIYDNIAKGTRCKFESNRPRAVLFEGPPGTGKTSCARVIASQAGVPLLYVPLEVVMSKYYGESERLLGSIFNLANELPDGAIIFLDEVDSLAATRDQEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRRQDLDPALISRFDSSITFDLPDEQTRQEIAAQYARHLSTPELVTFALVTEGMSGRDLRDICQHAERRWASKLIRGQAGEPSTHGLPPIQEYIECAQKRQRTILRQHDDGQKIMRDAGNTGPRMKKWPSVMV*

Protein Length: 495

Fln nts: TTAG_-_ATGCTCAGGGGGTTCATCCTTCCCTCTTTCACTGTCGCTGCTAAAGGTCAACAGGTTGCAATAAGATTTCAAGTACCTCCTAGCTGTGACCTTTCTCATTTGATTGTGGATGTGGTTTCACGCCTGGGCTTGAAGACCGATGAAAGTGGGGGTGGCTCAGAAATGATTTTGCATGCATGGGACAGTGCAGTTGCTCGACAGTTAATACTGATACACCCAGACCAATCTATCCCCAAGGGTGTTGAGACAGATCCGAAAGTTGATAATTCGCAAGAGCCATTGAGGCACAGAGCAACCAATGGAAATAACATTTGTGTTCTTGTGTTTGAGCCACTTATTGGCTCCAACAATGCTGAAATTGAATTTCTGAAAAGGGGCCCTTTCAGTGTAAAGGAATTTGATGCTCTTATCAGTGCGTTAAGAATAGCTTCTGGAAACACAAATGAAAGGAGAGCTGTACAGAAGAAACACAGAGATGCTCCAAAGCAAAGGGACAGGCAGAACACTGGACCTAATGTTTCTTCTAATGGAAATGCTTTAGAAGCATTAGAAGGCATGGGAGTGAAAATATATGGTCTAGAGGCAACTTATGGAAGCTCTGATAAGGACGCGGTATCTTGGGACAATATAGCAGGATACTATGAGCAAAAAAGGGAAATAGAGGACACTGTCTTGTTGGCTCTACGACAACCAGAGATATATGATAACATAGCAAAAGGAACTAGGTGCAAATTTGAATCTAATCGACCTCGAGCAGTACTCTTCGAAGGACCTCCAGGTACAGGAAAAACATCTTGTGCACGGGTCATTGCAAGCCAAGCAGGTGTTCCACTGTTGTACGTTCCGCTCGAGGTAGTGATGTCCAAGTACTATGGTGAAAGTGAGCGGCTGTTGGGATCTATATTTAATCTTGCAAATGAACTTCCTGATGGTGCTATTATTTTTTTGGATGAGGTTGATTCTTTGGCCGCAACTCGTGACCAAGAGATGCATGAGGCTACTCGAAGGATCTTATCTGTGCTTTTGAGACAGATAGATGGATTTGAACAGGACAAGAAAGTTGTCGTGATTGCTGCTACAAACAGGAGGCAAGATCTTGACCCAGCTCTTATCAGCCGATTTGATTCTTCAATCACATTTGACCTCCCTGATGAGCAAACACGGCAAGAGATTGCAGCTCAGTATGCACGGCATTTGAGTACTCCAGAACTGGTCACTTTTGCTTTAGTCACTGAAGGTATGTCAGGGCGTGACTTGAGGGACATTTGTCAACACGCTGAACGTCGTTGGGCCTCAAAGCTTATTAGAGGCCAAGCAGGTGAACCATCAACACATGGCCTTCCACCAATTCAAGAATACATTGAGTGTGCTCAGAAAAGGCAACGGACTATACTTAGACAGCATGATGATGGTCAAAAAATCATGAGAGATGCTGGAAATACTGGTCCTCGAATGAAAAAATGGCCATCTGTGATGGTCTAG___ACAGTATAACGAGAGATGCCTAAACAGGCAATGGTGTCATCTACATTAAGTGAAAATAAATGTCCAGTGCAAGAGAGACTCCTGATACGGGATATTGTACATTAGACTGGTATTTTTTATAAAAAGAATACAATGGTTTAATATGTGTGCACTAGACTGTCCTGAAAGAGTTCTTAGGGATAAAGTTATGTCCATAATGATGCAGCAGTTCAGTGCCGCACACTCATCACAGAACAAATACTGCTGGATATTTTGAAAAAACAGTAAATGTCACAATATTGTCTTCCCTGTATAAATAGTACGTTCCATTCATCAATCATGGAAGGGTGGATCAGCCAAATAATTGAATCATTTCAAGGTTTAATGAATAGTAAATACATCTAACATTACCTGCAGTTTTCTATGGGAAAACTTCAG

Fln Alignment:

Contig778___DKDAVSWDNIAGYYEQKREIEDTVLLALRQPEIYDNIAKGTRCKFESNRPRAVLFEGPPGTGKTSCARVIASQAGVPLLYVPLEVVMSKYYGESERLLGSIFNLANELPDGAIIFLDEVDSLAATRDQEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRRQDLDPALI--SRFDSSITFDLPDEQTRQEIAAQYARHLSTPELVTFALV---TEGMSGRDLRDICQHA
A9NWQ8_____________DPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVG--------IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1380		87		12	0.992554
1626	16			83	0.994512
1627		16	83		0.994512
1628	16		83		0.994512
1663	20			80	0.995493
1664		20		80	0.995493
1665	20	80			0.995493
1700	33		66		0.997452
1748	33		66		1.0
1768	83			16	0.994512
1816	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain