SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene764

Length: 1946 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene764
CGTCGTGACCTTGGCTGTCACTCATGTTTTGTTGGTCTCGTCTCTTCTGTTGAACCTGCTACTTTCTATCATCTTTTGGCCATTCCCGATCCATTGGTCCTCGCACCAGGTAAATCATCGAGATGCAGGAATTGAAGAGGGCGTGACTGATAATAATTCGCAGGCGCTGACATGGAGTAGGCACGCCGCAGAGGAAACAGAGGCAACGGCAGCGTATGATTGTTCTGGTCATGGATATGTCTTCGTCGATACGGTAAATATTGGGGCAGATGATGGGGGAAAAACATTTAACTGCGAATGTAACGACTGCTACACAGGACCCGATTGTTCCCAAATGGTTGCTGATTGCGCAGCAAATGTCGACAGCGGGGATCCTCTGTTCCTAGAGCCCTTCTGGATCAGGAATGCGGAAGCCAGCGCAACAGTGTTCCCGGGGTGGTATCGGATGAGCTATAAAATACAAGACAGTGGAGCAATACAGATATTATCCCCCGAGTTAGAGACTCAAATTCGTGGTATTCATGCGTTGGTGGGAAACGCCGTGACAGAAGGGAGATATATAGTGATTGGAACCGGCTCTAAGCAGCTTATCAACGCTGCAGTTTACAGTCTTTCTCCTAGGCGTGAAGATGCTCAACATCCTGCCCACGTTGTCGCAGTTCCGCCCCATTACGGAACATACAGAACCCAGACTCAAATGTTTGACTCTGCCGACTATAGCTGGGAGGGAGACGCTAGGGCATGGGTAAAACGCTCCAAATCTCTGAACTCGACCAGATTTGTAGAGATTGTAGCGTCTCCAAACAATCCCAGCGGTTCTCTTCAAGAAGGCGTATTAGAGGGACAAAACGTGAGGACTGTTTATGATCATGCCTACTATTGGCCTCACTTCACTGCCATTAATGAACCAGTTAACGAGGACGTGATGCTCTTCACCCTGTCAAAGCTCACTGGACACGCAGGCAGCAGGCTAGGATGGGCTATTGTGAAAGACTTTAATGTGTATCAGAAGATGACTGAATATGTTATTGGGAACACCTTAGGGGTTTCACATGACAGCCAGCTAAGGGCGACTAAGTTACTGAAAACAGTAACTGCTGGTTATCAAGGCAAATTGAAAGAGGGCAAGGCAGATGAATCGAGGAATCAGACGCTTCTTTTCCACTACGCTTACGATGTTATGCGAGGCCGATGGCAAAGATTGGAAAAGATCTTCAGCGGCTCCCAACGTTTCTCGCTTCAGTATTTGACTTCCAACTATTGCAGCTTTTTCCGGACTGTCACGGGGCCTTCGCCAGCGTACGCGTGGGTGAAATGCGAGAGAGAAGAAGACGAGGACTGCACAGCAGTGATGAAGAGTGGAGGGATTGTGGGGCGAAGAGGCGAAGAGTTTGAGGGAGAGAAACGGTATGTCCGATTGAGCTTAATCAGACGAGACGACAACTTCGCATTGTTAGAACGTCGCCTACAGGCGCTTCTTTCATATCGTAATTTTACTGTCAGCTCCACCACTTGAGCCGAGCCGAGCGAGAATTATGTGTTGCCCTTGGTTTGTTTAGGGTGTTGGTGGAGCTATAATCTTCAATGGAGATAGAGTGCCACCAGTGACCGCTGCTTCTTTTAACTCTGTCCTTGTGAAAGGAAAATATAAAAAAACTCTAGATGTAATAAAATTCTGAATAGTGTGCAACTTTTTTTATTGATTCGCTGAACTTTCAAGCGGGCCACTAATAGTGGGTGTACCAAGCAAGACAATGCAACTGAAATAGTGGTCCTCCCTACACTAAATGGGCCCGTGATGGGTGTAGCAGGGCAGATTAAAAAATGAAATGGTTGATCCTAAGTACATTATTTTTTGTGGTTTGCGTGCCATCCCATGCTGGATATACAGAAAGGAAAGTGGAATAAATACTGATGTAATTGCTGGGATGTATATATATATATAT

Ace file of the UniGene sp_v2.0_unigene764

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO	-	-	52%
FL-Next	sp=Tryptophan aminotransferase-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	tryptophan aminotransferase-related protein 4-like	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	lyase activity	GO:0016829	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	EGF-like, alliinase	IPR006947	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q93Z38

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 505 - 463

Fln protein: VVTLAVTHVLLVSSLLLNLLLSIIFWPFPIHWSSHQVNHRDAGIEEGVTDNNSQALTWSRHAAEETEATAAYDCSGHGYVFVDTVNIGADDGGKTFNCECNDCYTGPDCSQMVADCAANVDSGDPLFLEPFWIRNAEASATVFPGWYRMSYKIQDSGAIQILSPELETQIRGIHALVGNAVTEGRYIVIGTGSKQLINAAVYSLSPRREDAQHPAHVVAVPPHYGTYRTQTQMFDSADYSWEGDARAWVKRSKSLNSTRFVEIVASPNNPSGSLQEGVLEGQNVRTVYDHAYYWPHFTAINEPVNEDVMLFTLSKLTGHAGSRLGWAIVKDFNVYQKMTEYVIGNTLGVSHDSQLRATKLLKTVTAGYQGKLKEGKADESRNQTLLFHYAYDVMRGRWQRLEKIFSGSQRFSLQYLTSNYCSFFRTVTGPSPAYAWVKCEREEDEDCTAVMKSGGIVGRRGEEFEGEKRYVRLSLIRRDDNFALLERRLQALLSYRNFTVSSTT*

Protein Length: 506

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTGTTGGTCTCGTCTCTTCTGTTGAACCTGCTACTTTCTATCATCTTTTGGCCATTCCCGATCCATTGGTCCTCGCACCAGGTAAATCATCGAGATGCAGGAATTGAAGAGGGCGTGACTGATAATAATTCGCAGGCGCTGACATGGAGTAGGCACGCCGCAGAGGAAACAGAGGCAACGGCAGCGTATGATTGTTCTGGTCATGGATATGTCTTCGTCGATACGGTAAATATTGGGGCAGATGATGGGGGAAAAACATTTAACTGCGAATGTAACGACTGCTACACAGGACCCGATTGTTCCCAAATGGTTGCTGATTGCGCAGCAAATGTCGACAGCGGGGATCCTCTGTTCCTAGAGCCCTTCTGGATCAGGAATGCGGAAGCCAGCGCAACAGTGTTCCCGGGGTGGTATCGGATGAGCTATAAAATACAAGACAGTGGAGCAATACAGATATTATCCCCCGAGTTAGAGACTCAAATTCGTGGTATTCATGCGTTGGTGGGAAACGCCGTGACAGAAGGGAGATATATAGTGATTGGAACCGGCTCTAAGCAGCTTATCAACGCTGCAGTTTACAGTCTTTCTCCTAGGCGTGAAGATGCTCAACATCCTGCCCACGTTGTCGCAGTTCCGCCCCATTACGGAACATACAGAACCCAGACTCAAATGTTTGACTCTGCCGACTATAGCTGGGAGGGAGACGCTAGGGCATGGGTAAAACGCTCCAAATCTCTGAACTCGACCAGATTTGTAGAGATTGTAGCGTCTCCAAACAATCCCAGCGGTTCTCTTCAAGAAGGCGTATTAGAGGGACAAAACGTGAGGACTGTTTATGATCATGCCTACTATTGGCCTCACTTCACTGCCATTAATGAACCAGTTAACGAGGACGTGATGCTCTTCACCCTGTCAAAGCTCACTGGACACGCAGGCAGCAGGCTAGGATGGGCTATTGTGAAAGACTTTAATGTGTATCAGAAGATGACTGAATATGTTATTGGGAACACCTTAGGGGTTTCACATGACAGCCAGCTAAGGGCGACTAAGTTACTGAAAACAGTAACTGCTGGTTATCAAGGCAAATTGAAAGAGGGCAAGGCAGATGAATCGAGGAATCAGACGCTTCTTTTCCACTACGCTTACGATGTTATGCGAGGCCGATGGCAAAGATTGGAAAAGATCTTCAGCGGCTCCCAACGTTTCTCGCTTCAGTATTTGACTTCCAACTATTGCAGCTTTTTCCGGACTGTCACGGGGCCTTCGCCAGCGTACGCGTGGGTGAAATGCGAGAGAGAAGAAGACGAGGACTGCACAGCAGTGATGAAGAGTGGAGGGATTGTGGGGCGAAGAGGCGAAGAGTTTGAGGGAGAGAAACGGTATGTCCGATTGAGCTTAATCAGACGAGACGACAACTTCGCATTGTTAGAACGTCGCCTACAGGCGCTTCTTTCATATCGTAATTTTACTGTCAGCTCCACCACTTGA___GCCGAGCCGAGCGAGAATTATGTGTTGCCCTTGGTTTGTTTAGGGTGTTGGTGGAGCTATAATCTTCAATGGAGATAGAGTGCCACCAGTGACCGCTGCTTCTTTTAACTCTGTCCTTGTGAAAGGAAAATATAAAAAAACTCTAGATGTAATAAAATTCTGAATAGTGTGCAACTTTTTTTATTGATTCGCTGAACTTTCAAGCGGGCCACTAATAGTGGGTGTACCAAGCAAGACAATGCAACTGAAATAGTGGTCCTCCCTACACTAAATGGGCCCGTGATGGGTGTAGCAGGGCAGATTAAAAAATGAAATGGTTGATCCTAAGTACATTATTTTTTGTGGTTTGCGTGCCATCCCATGCTGGATATACAGAAAGGAAAGTGGAATAAATACTGATGTAATTGCTGGGATGTATATATATATATAT

Fln Alignment:

Contig764___TWSRHXXXXXXXXXXYDCSGHGYVFVDTVNIGADDGGKTFNCECNDCYTGPDCSQMVADCAANVDSGDPLFLEPFWIRNAEASATVFPGWYRMSYKIQDSGAIQILSPELETQIRGIHALVGNAVTEGRYIVIGTGSKQLINAAVYSLSPRREDAQHPAHVVAVPPHYGTYRTQTQMFDSADYSWEGDARAWVKRSKSLNSTRFVEIVASPNNPSGSLQEGVLEGQNVRTVYDHAYYWPHFTAINEPVNEDVMLFTLSKLTGHAGSRLGWAIVKDFNVYQKMTEYVIGNTLGVSHDSQLRATKLLKTVTAGYQGKLKEGKADESRNQTLLFHYAYDVMRGRWQRLEKIFSGSQRFSLQYLTSNYCSFFRTVTGPSPAYAWVKCEREEDEDCTAVMKSXXXXXXXXXXXXXXXXYVRLSLIRRDDNFALLERRLQALLSYRNFTVSSTT*AEPSENYV
Q93Z38_____________TWTNRAAAEAETVASFSCSGHGRAFVD--GLGVLDGQKP-PCECNNCYIGKDCSVLLKDCPVDANSGDPLFLEPFWMRQAERSAILVSGWHRMSYIYEDGTYV---SRELEKVIRKLHSVVGNAVTDNRFVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSAHLKFEGNASAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNVKTLHDYAYYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHVLQLLKVVVG------------DGGNE--IFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFKKVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQLIAMLKKLVYHEEDV--------PSENFM

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
561	80		20		0.995493
621	80			20	0.995493
747	12		87		0.992554
748		12		87	0.992554
750	87			12	0.992554
751	87			12	0.992554
872		10		90	0.90298
1078	16	83			0.994512
1096		60		40	1.0
1295	25		75		0.996473
1297	25	75			0.996473
1298	75			25	0.996473
1299			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1932	1946	TA TA TA TA TA TA TA T	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain