SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene715

Length: 1315 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene715 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleopor_Nup85 domain containing protein	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	60%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoporin Nup85-like	IPR011502	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SU98

Fln msg: your sequence is shorter than subject: 287 - 715

Fln protein: AELLLRSEKYNLGGISLEELYRLVYAQVLSSHSFTWQIAPIYLASCPRQGLRLLEILLLRQPFTGDNRLALKGLEICRQYELNAVGVSIMKIVGMHHWKHGRKGAGILWLQRARDENRLSSIAEQLSEIVGKSVSDDGFQQWEGLIDLLGTEREATGGLAFLHKYREFKKALLFVRDLRLSEMNKQKVTAAARQAVNSLIQLMKNPSTPQRFWLSLLNDSVKLLMWPDHALINVAETNLLLNKLQELSLAKVRGDLEVSHNDESPQAVQHVRLALATNLGRAILQE*

Protein Length: 288

Fln nts: AAGCAGAGCTGCTTCTGCGTAGTGAGAAATATAATTTGGGAGGAATAAGCTTGGAGGAGCTTTATCGGCTTGTTTATGCTCAAGTTTTGTCATCTCATTCTTTTACTTGGCAGATAGCACCTATTTATCTGGCATCTTGCCCTAGACAAGGTTTGCGATTATTGGAGATTTTACTACTAAGGCAACCATTTACTGGAGACAATCGACTAGCTCTAAAGGGTCTAGAAATCTGTCGTCAGTATGAACTAAACGCTGTTGGAGTAAGCATCATGAAGATTGTTGGGATGCATCACTGGAAACATGGTAGGAAAGGGGCAGGAATTCTGTGGCTGCAGCGAGCTCGTGATGAAAATAGGCTTAGTAGCATTGCTGAGCAGCTGTCAGAAATTGTTGGAAAATCTGTTTCAGATGATGGATTTCAGCAATGGGAAGGCTTGATTGATTTGCTGGGAACAGAACGTGAGGCTACTGGAGGCCTTGCATTTCTTCACAAGTATAGGGAGTTCAAGAAGGCCTTACTGTTTGTTCGAGATTTGCGTCTGAGTGAAATGAACAAGCAGAAGGTTACTGCAGCTGCCCGTCAAGCTGTAAATTCTTTAATACAGTTGATGAAGAACCCATCTACACCTCAACGATTCTGGCTATCTCTATTGAATGATTCTGTGAAGCTGCTTATGTGGCCAGATCATGCTTTAATCAATGTCGCTGAAACTAACCTGTTGTTAAACAAGTTGCAAGAACTGTCTCTAGCAAAGGTCCGAGGTGATTTGGAGGTTTCTCATAATGACGAGTCTCCTCAAGCTGTCCAGCATGTGAGGCTGGCACTTGCTACAAACCTTGGCCGTGCTATATTGCAAGAGTGA___ACACTGTTGATTTGATATATCAAGATCCTGTAAGTTGGCAATAATTTGTGAAGAGCATTTGATATAACCAAGGGCTCATATTTGTCAAATGCCAATGGAAATGGAGTGAACATCGAAGCTACATCTCAGTTTCTGTTTTTAGTAAATCGAGGGATTTGCTATTGTTGTACAGTTATTTACGGGGGCAGTGTCATTTAAGTGCCAATTTAAAGAATAAAGAGTCATGAAACTGCTATAGGCTGACATTAGAGACTGTTACATGCCTATTCCATTTGAAAGGCACCTTTACCAATTGATGTAACCACCAGTTTCTAAATATAGAGTGCAGACAAGTACATAGATTTTATCACTAGGTTTCTTGTTGCAGTGGAACCAAAATGCACCTTTACTAATTGATGTAATTACTGGTTTCTAAATATAGATCACAAACAACTACATAAATTTTATTGACT

Fln Alignment:

Contig715___AELLLRSEKYNLGGISLEELYRLVYAQVLSSHSFTWQIAPIYLASCPRQGXXXXXXXXXRQPFTGDNRLALKGLEICRQYELNAVGVSIMKIVGMHHWKHGRKGAGILWLQRARDENRLSSIAEQLSEIVGKSVSDDGFQQWEGLIDLLGTEREATGGLAFLHKYREFKKALLFVRDLRLSEMNKQKVTAAARQAVNSLIQLMKNPSTPQRFWLSLLNDSVKLLMWPDHALINVAETNXXXXXXXXXXLAKVRGDLEVSHNDESPQAVQHVRLALATNLGRAILQE
D7SU98_____________AEIILQEGRDNLGGISIEELHRLIYAQVLSSHALTWQIAPIYLTSCMKQGMGLLEVLLYKQPVQ-DNQMLLKTTEICRLYDLESISSSIMKIAGVYHWKHGRKGSGVFWLQQARDEFRLNRIAQQLFDFVGRSISDESFKQWEGLIELLGSESKIAGGLDFLHKYRDFKKS--------LQQVQVGKTTDAAQQAVESLISLMRNPSTPQRFWLPLLHDSLKLLSWQERPLLNANQTNLLLNKLQELSMARLRPDF--IEANLPPQALSSVRLALATNLGRAILEE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
876	90	10			0.90298
926	25	75			1.0
938	10		90		0.90298
939	10	90			0.90298
989	88	11			0.923564
990		62	37		1.0
992			87	12	0.992554
1020		80		20	0.995493
1036	60		40		1.0
1151			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain