SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene711

Length: 2860 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene711
CGTCGTGACCTTGGCTGTCACTCACTTTTCCATGGCTGTAAAAAATCGCTTGCAAATCCAAGAGAAACAATCGATTTCCTGATGAATCCCATCATTTGAGGCGTCGTGACCTTGGCTGTCACTCATTTTTATTCGGGTTTGCTAAGTAAAAGAACTTTAGAGATTATCAGGGTCCCTGATTTGGGCTAGATTTGGAAATTGAAAAGTTGATTCGGGTGATGAGACAATGAATTCAAGTGGAAGGAGGGTTGAGAATGCCCAGAAGGCAGCTGTTCCTCTCAACAATTATGTGTTTGATTTTGATTTGGGATTAAATCTTTCCGGTAATCAATCATCCAAGAGTCTAAAGGATCAGAAATATAATAACACTCCAACCCCATCTTCGTCCAAATCGCATAACCCTGCTCCAGCCTGGACCTCCAATAAGCCCTCATGGACTCCTCAACCCTCACCTTCACATGCTCCTAGGCCTGCACAAACTGGGTTTGGATGGACTGGCCAATCTGGGCAATCATCGGGTGTGTGGTCTGCCCATGGCCAGTCCCAACCTACACCGATGGCCGGTGACATCTTTGGAAAGAGTTGGGCGAAACCAGATTCAAGCAAGCAGGCCACCACCGGGATTGTGGGGGGTTTGAATTCAGGGGCTGCGCCCAATTTGTTTGGGGATCTGGTTGGGGAAGTCTTAGGGAAGCAAAAGAGTAATACCCCCTTGAAGCAAGTGTCCTCCAATTCATCCATTTCCATGGGCAGTGTGGCTGCAGCTTTACCTAAAGGTGGAATTCCCCTGAAGGATCAGCGTGCTGCGGGCAGATCTGCTGAAGAGTTTGGGGACTTTGCTGATCAACATACAAGTAAGAAGGTGGGTGACCCTTTTGAATCTTTGCCGACCTTCTCAAATGTAAGTGCCACCTCTGGGAAGGAGGATCCATTTGGTTCTTTTCTCGGTTCTGGTGCAAAGGAGGTTAAGCGTCAACCTACTTCAACCGTTAGTCAAGATCCTTTTATAACTTCGAACAATGAAGAAGTGTTTGGGGACTTTCAGAATGTCTCTGCGACAGAGAGCACTGCTAACAATGGTCACGGAGATCCTTTTCCATCAATTTCGGTTGATAATAAGGATGCATTTGGAGATTTTCAGAATGGAAACAAAAGCCATGATTCTACTGTCAGTGGAGATCCCTTTGCAGCATCCTTGAATGTCTCTAATGACCTATTTGGTGTTGGTTCAGTTCCTAATTTGTCAAATACAGGAGCCCCTTCTACTGATTTTTCTTTTGCTGCAACTGCTGCTGCCAGCTTCACGGATTCTCATACACCTTCTGCTACCTCCATGAAGAAAGACACAGCCCCTGTCAGAGTTGCTGATCCATTTGAAATGTTCAACAAAAGCTTTTCTTCTCAGAAACAGGCCCCTCAAGAGAAAAGCAAGGATCCCCTGGAATCTTTGCTCTCATCATCTTTTGCTGCTGCCTCGGGAGGTTTTGCTAGTCAGCCATTTAAAGAGACTGATGACTGGGGTTTGGAAGCCGACTTTGGAGGTGGTGATTCAGGCACAACAACAGAGTTGGAGGGGCTTCCACCACCTCCTGCCGGAGTCACAGTATCAATAGCTAAAGATAAAGGCATGGAGAGTTATAAGCAGGGGCAGTATGCCGATGCCATTAAATGGTTTTCTTGGGGAATGGTTCTTTTAGAAAAATGTGCCAACGACAGCAACTCTTCTGTAGAGATTTTAACCTGCAGGGCTTCATGCTACAAGGAAGTTGGAGATTATAAGAAGGCTATTGATGACTGTTCCAAGGTTCTGGATTGTGATAAATCAAATGCGTCTGTGCTACTCCAGCGTGCTCTTTTGTATGAAAGCAATGAGAAATATAAACTTGGAATCAATGATTTGAGAAATGTGCTAAAGATGGATCCTGGAAATAGACTGGCGAAAAGTACTCTATCAAGGCTGATCAAAATGGCTGATTAAAGACAGTTTGTTCTCTTCTCATTTATGCCCATTGATTGATAAAGGTTCAAGTCCTAGTTTGGGAGACTATAAATTTGTATGTTATATGTTAATGAGTGCTTAGCATAGAGGAATATCTCTATTTCACATTTTTCTGAACTGTGACACAATTCTATTCTGTTCTTATTCTCATTCCTGTAGTAATGCTACATTAGTACATTATCAGTCAATTTTATGCGTAATACACGCTGCGAAAGGGGTGGGTTCATGTTTATCCAATCAAACCCCGTAGCCCCTTTTTTGTTCTGTCACTTGTTTCCTGTTTCTGGCGAAAGTAACACTTCTCTGTGCTACTTACAGGTTCTGGATTGTGACAAATAAAATGGGCCTGTGCTACTCCAGAGTGCTCTTTTGTATGAAAGCACTGAGATATATAAACTTGGAAATAGACTGGCGAAAAGTACTCTATCGATCAAAATGGCTGATTAAAGTCAGTTTGATGATTGAGCTCTTTTCTTTCATGCCCATTGATTGATAAAGTTTCAAGTCGTAGTTTGGGAGACTATTAATTTGTATGTTATATGTTAATTAGTGCTTAGCATAGAGGAATATTTCTATTTCACATTTTTCTGAACTGTGACACAATTCTTATGGCAACATAGAGGAATATTTCTATTTCACATTTTTCTGAACTGTGACACAATTCTTATGGCAACATAGAGGAATATTTCTATTTCACATTTTTCTGAACAGTGACACAATTCTTATGGCAATAAATTGTAATGGCATTGAGGATATCATTAATTCAATTTTGACTGACTTGTGAGGCTGGATGATGTGAAACATATTGTGGTCACTTTGGTTGAGATTTTTTAAATAGCCTGTTATGAAGGAAAAACATCA

Ace file of the UniGene sp_v2.0_unigene711 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTA1_RICCO	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	tetratricopeptide repeat domain-containing protein	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	55%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADQ4

Fln msg: your sequence is longer than subject: 740 - 214

Fln protein: MNSSGRRVENAQKAAVPLNNYVFDFDLGLNLSGNQSSKSLKDQKYNNTPTPSSSKSHNPAPAWTSNKPSWTPQPSPSHAPRPAQTGFGWTGQSGQSSGVWSAHGQSQPTPMAGDIFGKSWAKPDSSKQATTGIVGGLNSGAAPNLFGDLVGEVLGKQKSNTPLKQVSSNSSISMGSVAAALPKGGIPLKDQRAAGRSAEEFGDFADQHTSKKVGDPFESLPTFSNVSATSGKEDPFGSFLGSGAKEVKRQPTSTVSQDPFITSNNEEVFGDFQNVSATESTANNGHGDPFPSISVDNKDAFGDFQNGNKSHDSTVSGDPFAASLNVSNDLFGVGSVPNLSNTGAPSTDFSFAATAAASFTDSHTPSATSMKKDTAPVRVADPFEMFNKSFSSQKQAPQEKSKDPLESLLSSSFAAASGGFASQPFKETDDWGLEADFGGGDSGTTTELEGLPPPPAGVTVSIAKDKGMESYKQGQYADAIKWFSWGMVLLEKCANDSNSSVEILTCRASCYKEVGDYKKAIDDCSKVLDCDKSNASVLLQRALLYESNEKYKLGINDLRNVLKMDPGNRLAKSTLSRLIKMAD*RQFVLFSFMPID**RFKS*FGRL*ICMLYVNECLA*RNISISHFSEL*HNSILFLFSFL**CYISTLSVNFMRNTRCERGGFMFIQSNPVAPFLFCHLFPVSGESNTSLCYLQVLDCDK*NGPVLLQSALLYESTEIYKLGNRLAKSTLSIKMAD*

Protein Length: 741

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTCCATGGCTGTAAAAAATCGCTTGCAAATCCAAGAGAAACAATCGATTTCCTGATGAATCCCATCATTTGAGGCGTCGTGACCTTGGCTGTCACTCATTTTTATTCGGGTTTGCTAAGTAAAAGAACTTTAGAGATTATCAGGGTCCCTGATTTGGGCTAGATTTGGAAATTGAAAAGTTGATTCGGGTGATGAGACA_-_ATGAATTCAAGTGGAAGGAGGGTTGAGAATGCCCAGAAGGCAGCTGTTCCTCTCAACAATTATGTGTTTGATTTTGATTTGGGATTAAATCTTTCCGGTAATCAATCATCCAAGAGTCTAAAGGATCAGAAATATAATAACACTCCAACCCCATCTTCGTCCAAATCGCATAACCCTGCTCCAGCCTGGACCTCCAATAAGCCCTCATGGACTCCTCAACCCTCACCTTCACATGCTCCTAGGCCTGCACAAACTGGGTTTGGATGGACTGGCCAATCTGGGCAATCATCGGGTGTGTGGTCTGCCCATGGCCAGTCCCAACCTACACCGATGGCCGGTGACATCTTTGGAAAGAGTTGGGCGAAACCAGATTCAAGCAAGCAGGCCACCACCGGGATTGTGGGGGGTTTGAATTCAGGGGCTGCGCCCAATTTGTTTGGGGATCTGGTTGGGGAAGTCTTAGGGAAGCAAAAGAGTAATACCCCCTTGAAGCAAGTGTCCTCCAATTCATCCATTTCCATGGGCAGTGTGGCTGCAGCTTTACCTAAAGGTGGAATTCCCCTGAAGGATCAGCGTGCTGCGGGCAGATCTGCTGAAGAGTTTGGGGACTTTGCTGATCAACATACAAGTAAGAAGGTGGGTGACCCTTTTGAATCTTTGCCGACCTTCTCAAATGTAAGTGCCACCTCTGGGAAGGAGGATCCATTTGGTTCTTTTCTCGGTTCTGGTGCAAAGGAGGTTAAGCGTCAACCTACTTCAACCGTTAGTCAAGATCCTTTTATAACTTCGAACAATGAAGAAGTGTTTGGGGACTTTCAGAATGTCTCTGCGACAGAGAGCACTGCTAACAATGGTCACGGAGATCCTTTTCCATCAATTTCGGTTGATAATAAGGATGCATTTGGAGATTTTCAGAATGGAAACAAAAGCCATGATTCTACTGTCAGTGGAGATCCCTTTGCAGCATCCTTGAATGTCTCTAATGACCTATTTGGTGTTGGTTCAGTTCCTAATTTGTCAAATACAGGAGCCCCTTCTACTGATTTTTCTTTTGCTGCAACTGCTGCTGCCAGCTTCACGGATTCTCATACACCTTCTGCTACCTCCATGAAGAAAGACACAGCCCCTGTCAGAGTTGCTGATCCATTTGAAATGTTCAACAAAAGCTTTTCTTCTCAGAAACAGGCCCCTCAAGAGAAAAGCAAGGATCCCCTGGAATCTTTGCTCTCATCATCTTTTGCTGCTGCCTCGGGAGGTTTTGCTAGTCAGCCATTTAAAGAGACTGATGACTGGGGTTTGGAAGCCGACTTTGGAGGTGGTGATTCAGGCACAACAACAGAGTTGGAGGGGCTTCCACCACCTCCTGCCGGAGTCACAGTATCAATAGCTAAAGATAAAGGCATGGAGAGTTATAAGCAGGGGCAGTATGCCGATGCCATTAAATGGTTTTCTTGGGGAATGGTTCTTTTAGAAAAATGTGCCAACGACAGCAACTCTTCTGTAGAGATTTTAACCTGCAGGGCTTCATGCTACAAGGAAGTTGGAGATTATAAGAAGGCTATTGATGACTGTTCCAAGGTTCTGGATTGTGATAAATCAAATGCGTCTGTGCTACTCCAGCGTGCTCTTTTGTATGAAAGCAATGAGAAATATAAACTTGGAATCAATGATTTGAGAAATGTGCTAAAGATGGATCCTGGAAATAGACTGGCGAAAAGTACTCTATCAAGGCTGATCAAAATGGCTGATTAAAGACAGTTTGTTCTCTTCTCATTTATGCCCATTGATTGATAAAGGTTCAAGTCCTAGTTTGGGAGACTATAAATTTGTATGTTATATGTTAATGAGTGCTTAGCATAGAGGAATATCTCTATTTCACATTTTTCTGAACTGTGACACAATTCTATTCTGTTCTTATTCTCATTCCTGTAGTAATGCTACATTAGTACATTATCAGTCAATTTTATGCGTAATACACGCTGCGAAAGGGGTGGGTTCATGTTTATCCAATCAAACCCCGTAGCCCCTTTTTTGTTCTGTCACTTGTTTCCTGTTTCTGGCGAAAGTAACACTTCTCTGTGCTACTTACAGGTTCTGGATTGTGACAAATAAAATGGGCCTGTGCTACTCCAGAGTGCTCTTTTGTATGAAAGCACTGAGATATATAAACTTGGAAATAGACTGGCGAAAAGTACTCTATCGATCAAAATGGCTGATTAA___AGTCAGTTTGATGATTGAGCTCTTTTCTTTCATGCCCATTGATTGATAAAGTTTCAAGTCGTAGTTTGGGAGACTATTAATTTGTATGTTATATGTTAATTAGTGCTTAGCATAGAGGAATATTTCTATTTCACATTTTTCTGAACTGTGACACAATTCTTATGGCAACATAGAGGAATATTTCTATTTCACATTTTTCTGAACTGTGACACAATTCTTATGGCAACATAGAGGAATATTTCTATTTCACATTTTTCTGAACAGTGACACAATTCTTATGGCAATAAATTGTAATGGCATTGAGGATATCATTAATTCAATTTTGACTGACTTGTGAGGCTGGATGATGTGAAACATATTGTGGTCACTTTGGTTGAGATTTTTTAAATAGCCTGTTATGAAGGAAAAACATCA

Fln Alignment:

Contig711___MKKDTAPVRVADPFEMFNKSFSSQKQAPQEKSKDPLEXXXXXXXXXXXXXXXSQPFKETDDWGLEADFGGGDSXXXXXXXXXXXXPAGVTVSIAKDKGMESYKQGQYADAIKWFSWGMVLLEKCANDSNSSVEILTCRASCYKEVGDYKKAIDDCSKVLDCDKSNASVLLQRALLYESNEKYKLGINDLRNVLKMDPGNRLAKSTLSRLIKMAD
D5ADQ4_____________MKKDTAPVRVADPFEMLNKSFSSQKQAPQEKSKDPLESLLSSSSAAASGGFASQPFKECDDWGLETDFGGGDSGTTTELEGLPPPPAGITVSIAKDKGTESYKQGQYADAIKWFSWAMVLLEKCVNDSNSSVEVLTCRASCYKEVGEYKKAIDDCSKVLDYDKSNAPVLLQRALLYESTEKYKLGVNDLRTVLKMDPGNRLAKSTLSRLIKMAD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
2256		75		25	0.996473
2498			10	90	0.90298
2546	88		11		0.923564
2667	60		20		0.999999
2677		40		60	1.0
2706	20	80			0.999996
2722		25		75	1.0
2725	14	85			0.993533
2745	20		60		0.99255
2746	20			80	0.995493
2750	40	60			1.0
2752	20	20	60		0.99255
2753		60	20	20	0.99255
2754	20	60		20	0.99255
2757		25	75		0.996473
2758			75	25	0.996473
2766		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain