SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene706

Length: 1139 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene706

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG3897 Predicted methyltransferase	-	-	1.0e-13	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	protein	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA12

Fln msg: your sequence is longer than subject: 241 - 203

Fln protein: MDTLKSNNNGTQRNKANSFLRSWAWKREHRPDKDRFDRPYHHKVIVQGVPHDLVIHQAPFKTTGFASTVWDSAIVLSKYLERLPQKVEGRNCIELGAGCGLPGIVAAYLGASSVLLTDFPDNLDLLQRNIMINKVQKTVSVHPLVWGSRSERLISPFDLIIATDVMYCLEAVDSLLSTLKMASDAETVILLAYGRNRQAEQTFLEKAHRYFSVKQVSDEELDDVYRCVDVDVLELRVKSE*

Protein Length: 242

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATGGAGGTTGCCAATCTGTTTTAAATAACATCCATCTCTCTTACATTTTAGGTTATGCATTCATCTAAAGATTCCATTCA_-_ATGGATACACTGAAAAGCAACAACAATGGGACACAGAGGAACAAAGCCAATTCCTTTTTGAGATCATGGGCTTGGAAGAGAGAGCACAGGCCTGATAAGGACCGTTTTGATAGGCCTTACCATCACAAAGTCATTGTTCAGGGTGTTCCACATGACCTGGTTATCCATCAAGCTCCTTTCAAGACGACTGGTTTTGCATCTACAGTATGGGACAGCGCAATAGTGTTGTCCAAGTATCTGGAAAGGCTACCCCAAAAGGTGGAGGGCAGGAATTGCATAGAACTTGGAGCAGGGTGTGGGCTTCCAGGCATTGTTGCAGCTTACCTTGGTGCTTCTTCAGTTCTGCTTACCGACTTTCCAGATAATCTTGATCTTTTGCAAAGAAATATTATGATAAATAAAGTGCAGAAGACTGTCTCTGTACACCCACTGGTCTGGGGAAGTAGATCTGAACGTTTAATAAGCCCTTTTGACCTAATTATTGCTACCGATGTCATGTACTGTCTTGAAGCAGTGGACTCGCTGTTGAGTACATTAAAGATGGCCTCAGATGCAGAAACAGTAATTCTATTAGCTTATGGACGTAACAGGCAAGCAGAACAAACCTTTTTAGAAAAAGCTCACAGATACTTTTCTGTAAAACAAGTATCGGATGAAGAACTGGATGACGTTTACCGTTGTGTGGATGTAGATGTTTTGGAATTAAGGGTTAAATCTGAATAG___CATATTTTCTTAGTCTTCTTACTTCTCATTCGCTATACATGTATGAATGCATGTATAGTTTAGTCTATCCCATAAAGGATTTTTTCTCCAGACAGGAAAGAGCATTTGCTTTCACAAAAGGATGGATGGGTTGAACTGCAGATATTGACTGCAATGAAATATTTGTACTGAAAAATTTGTAAAACCCCAAGATTGGTACCGCTAACTTTTTTGGTTCTGGCTGAAAATGGATGATGTATGAACAAATCACAACATCTGGATATATCTTAGTATGTAAAGCAACTAGACACAATTAAGTGATATATTCAG

Fln Alignment:

Contig706___LVIHQAPFKTTGFA-STVWDSAIVLSKYLERL---PQKVEGRNCIELGAGCGLPGIVAAYLGASSVLLTDFPDNLDLLQRNIMINKVQKTVSVHPLVWGSRSERLISPFDLIIATDVMYCLEAVDSLLSTLKMASDAETVILLAYGRNRQAEQTFLEKAHRYFSVKQVSDEELDDVYRCVDVDVLEL
D5AA12_____________LIIHDHEDLADSIAGSWTWDCSLVLAQWLPMPSWPPDSFTGKRVVELGAGTGIPGLTAAALGAS-VVLTDIPELLPGLQRNVDENDLRQQATVKSLMWGDDCSPLSPPVDFLLMSDLLYDVKAMPALCKTLNELADGRTQILLAYELRHGTTECFKALLEAGFRWTKVPQEELHPQWQSEDIGIFRV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
508		10		90	0.90298
509	90		10		0.90298
510	90			10	0.90298
511	90	10			0.90298
515	10	90			0.90298
516	90	10			0.90298
517		10	90		0.90298
518	90			10	0.90298
519	90			10	0.90298
521	90		10		0.90298
527	10			90	0.90298
827	20		80		0.995493
829	85			14	0.993533
852			20	80	0.995493
945	33			66	0.997452
948		66		33	0.997452
949	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain