SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene705

Length: 1771 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene705

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative anthocyanidine rhamnosyl-transferase [Capsicum annuum]	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	protein	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	59%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	59%
Blast2go	N-Glycan biosynthesis	00510	59%
Blast2go	Mucin type O-Glycan biosynthesis	00512	59%
Blast2go	Various types of N-glycan biosynthesis	00513	59%
Blast2go	Other types of O-glycan biosynthesis	00514	59%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	59%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	59%
Blast2go	Lipopolysaccharide biosynthesis	00540	59%
Blast2go	Peptidoglycan biosynthesis	00550	59%
Blast2go	Glycerolipid metabolism	00561	59%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	59%
Blast2go	Sphingolipid metabolism	00600	59%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	59%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	59%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	59%
Blast2go	Carotenoid biosynthesis	00906	59%
Blast2go	Zeatin biosynthesis	00908	59%
Blast2go	Flavonoid biosynthesis	00941	59%
Blast2go	Anthocyanin biosynthesis	00942	59%
Blast2go	Flavone and flavonol biosynthesis	00944	59%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	59%
Blast2go	Betalain biosynthesis	00965	59%
Blast2go	Biosynthesis of type II polyketide products	01057	59%
Blast2go	Metabolic pathways	01100	59%
Blast2go	Biosynthesis of secondary metabolites	01110	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	59%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKI0

Fln msg:

Fln protein: MDDHNNGIKKLHFLVFPWLAQGHINPFLELSKALAIHGHKVSFLSTPLNISRIRPSLQIQDWPGQIDLLELPLPPTEGLTPGAECTADIPPEMAFPLKKAMDGMEKPFGSLLEKLSPDYLIHDFVQYWTQRAAADMKVPAIYFSIFPPASLAHVTHPSKLWNHDITAEEVAALPLGFPSSAITFKLYEAQDLLVMYTGLPGHIPPAYRFAKCLEGCMAVIVKSCFEYEDNYISYYQDAIGVPVLSVGPLLPAVHPGTTANSSDRSDLLEWLDRQRAASVVFVSFGSEAFLSEEQIHQLALGLEASGIPFLWCLRFPRYSDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVRILSHPSIGGFLSHAGWSSVMESLSFGIPLILLPLRLDQGLNARQVAAELEAGVEIERGNDGSFLRESISTTVKKAMAGEERKKLRSNAAKARDIIAANKQSSYIHDFLQKLEQLAEAYQKKKSL*

Protein Length: 479

Fln nts: ATGGGGGCATCCCTCTGTAACACCATTCCAGATTGGGAGCTTTACG_-_ATGGACGATCACAATAATGGAATCAAGAAGCTTCACTTTCTGGTATTTCCATGGTTGGCGCAGGGCCATATAAATCCTTTCTTAGAGCTCTCCAAGGCCCTCGCAATCCACGGCCACAAAGTCTCCTTCCTCTCCACGCCTCTTAACATTTCCAGAATCAGGCCGTCATTACAGATTCAAGACTGGCCAGGCCAGATCGATCTGCTGGAACTGCCGTTACCGCCCACAGAGGGACTGACTCCCGGCGCGGAATGTACAGCAGACATCCCGCCAGAAATGGCGTTTCCGCTGAAGAAAGCCATGGACGGCATGGAGAAGCCCTTCGGAAGTCTTTTGGAGAAGCTGTCGCCGGATTATCTCATCCACGACTTCGTGCAATATTGGACGCAGAGAGCTGCTGCGGATATGAAAGTTCCGGCCATTTATTTCTCTATCTTCCCCCCAGCGAGCCTTGCCCATGTCACACACCCTTCTAAATTGTGGAACCACGACATAACCGCCGAGGAGGTCGCGGCTCTGCCCCTTGGGTTTCCGTCCTCGGCGATCACATTCAAGCTATACGAAGCACAGGATCTTTTGGTCATGTACACAGGATTACCCGGCCACATACCTCCGGCCTATCGGTTCGCTAAATGCCTGGAAGGATGCATGGCGGTAATTGTGAAATCCTGCTTTGAATACGAAGATAATTATATTAGTTACTACCAGGATGCCATCGGAGTTCCCGTGCTTTCTGTAGGCCCGCTCTTGCCAGCAGTCCACCCCGGCACCACTGCCAACAGCAGCGACCGGTCTGATCTACTGGAATGGCTGGACCGGCAGAGGGCGGCGTCGGTCGTTTTTGTGTCGTTCGGCAGCGAGGCCTTTCTCTCGGAAGAGCAAATCCACCAACTCGCGTTGGGCCTGGAGGCCAGTGGGATCCCATTCCTCTGGTGTCTCCGTTTTCCGCGGTATTCGGACAGTGGCCGAGACGATCCGGTGGGGATCCTTCCCGAGGGATTCGAGATTCGAACCCAGGACCGAGGCCTAGTCGTGCAGGGCTGGGTACCACAGGTACGGATCCTCTCGCATCCATCCATCGGTGGGTTTCTTAGCCACGCAGGATGGAGCTCCGTCATGGAGTCACTGAGCTTCGGAATACCCCTCATTTTGCTCCCTCTTCGACTTGACCAGGGCTTAAATGCCCGGCAAGTAGCTGCGGAATTGGAGGCGGGGGTCGAAATAGAAAGGGGAAACGATGGCTCTTTTCTGAGAGAAAGCATATCGACGACAGTAAAAAAGGCAATGGCCGGAGAGGAGAGGAAGAAGTTGAGATCGAATGCTGCGAAGGCCCGTGATATTATAGCAGCCAATAAGCAGAGTAGTTACATCCATGATTTCCTTCAAAAGCTCGAACAGTTGGCTGAAGCCTACCAGAAGAAGAAAAGCTTATAA___CGTTGTGTTGGCATATAGATAAAAAATATGTGAAATAATAATAAGGTCAGCATCTAAATAATGTCAGGGAGATTCGGGTCATTAATGCTGCCACTAGTATTATTATAGGATTGTCTGTATTTTTGACGAGTTGTTGTAACAAAATTAAAGGCCTACTACATTACCATGTTGTATAAAGAATCTTTTTCGAATGTTGAGCGCAATGATCAATCCATGACGGTAGCGTTACAAATATCGATTTGAAGGACTTTTGCTGCCGCAACAGATATCGATTCAGTAAGGATGGATGTG

Fln Alignment:

Contig705___MDDHNNGIKKLHFLVFPWLAQGHINPFLELSKALAIHGHKVSFLSTPLNISRIRPSLQIQDWPGQIDXXXXXXXXXXXXXXXAECTADIPPEMAFPLKKAMDGMEKPFGSLLEKLSPDYLIHDFVQYWTQRAAADMKVPAIYFSIFPPASLAHVTHPSKLWNHDITAEEVAALPLGFPSSAITFKLYEAQDLLVMYTGLPGHIPPAYRFAKCLEGCMAVIVKSCFEYEDNYISYYQDAIGVPVLSVGPLLPAVHPGTTANSSDRSDLLEWLDRQRAASVVFVSFGSEAFLSEEQIHQLALGLEASGIPFLWCLRFPRYSDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVRILSHPSIGGFLSHAGWSSVMESLSFGIPLILLPLRLDQGLNARQVAAELEAGVEIERGNDGSFLRESISTTVKKAMAGEERKKLRSNAAKARDIIAANKQSSYIHDFLQKLEQLAEAYQKKKSL
B8LKI0_____________MMDSHTGKKKVHFLLFPWLAQGHINPFLELSKALAIHGHKVSFLSTPVNISRIRPSLQLQDWPGQIDLMELPLPPTEGLTPGAECTADIPTEMAFPLKVALDGIEKPFRSLLRQLSPDYLVHDFVQYWTQSAAAEMQVPAIYFSIFPPASFAYALHPSKLRNQDITAEELAAPPFGFPSSVIRFRLHEARDLLVMYRGIPGHIAPISRFAKCLEGCMAVILKSCFEYEEKYMSYFEDALGVPVLSVGPLTPAVLPGASGNGSDHSDLLEWLDRQREASVVFVSFGSEAFLSEDQIHELALGLEASGLPFLWSIRFPRYSDGGH-DPLGVFPEGFQIRTQDRGLVVEGWVPQVQILSHRSIGGFLSHGGWSSAMESLSFGIPLIVLPIQLDQGLNARQIAAELKAGIEIERGEDGSFLRENICTTLTMAMAGEEGEKLRSKAAEARDIIAANKQ-SHIHDFIQKLEQLAEDHKNKKQV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
694	66		33		1.0
701			85	14	0.993533
753	88			11	0.923564
772		11		88	0.923564
787	87	12			0.992554
811	16	83			0.994512
1007	33		66		0.997452
1012			33	66	0.997452
1234		33		66	1.0
1339		66		33	0.997452
1349	33		66		0.997452
1381	16	83			0.994512
1396	83		16		0.994512
1480	40		60		1.0
1509	50		50		1.0
1523	50			50	1.0
1528	25		75		0.996473
1531		50		50	1.0
1548		50		50	1.0
1555	50			50	1.0
1571		75	25		0.996473
1575		50		50	1.0
1602	50		50		1.0
1603		25		75	0.996473
1630	50		50		1.0
1670	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain