SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene702

Length: 1504 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene702 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carrier protein [Ribes nigrum]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	mitochondrial carrier	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ1

Fln msg: your sequence is longer than subject: 343 - 311

Fln protein: MPEIASELHKGLLLKHKETHNLSNYDNIDNSMLIHGEGDQSEIQFHDGLSFSQFMVAGSIAGMVEHMAMFPIDTLKTRMQMLATSGGSAHAAVGRALKSIVKSEGPLGLYRGIGAMGLGAGPAHAVYFSVYETCKEKMGGNRRGHHPFAHAASGVLATIASDAVFTPMDVVKQRLQLRNSPYGGVMDCIKRILREEGFRAFYASYRTTVVMNAPFTAVHFATYEAVKKILSRISPENATEEHLLVHIGAGGAAGALASAVTTPLDVVKTRLQCQGVCGADRFSSSSISDVVGKIVRKEGPSALMRGLKPRILFHAPAAAICWSTYEASKTFLHNVNQAAARV*

Protein Length: 344

Fln nts: AATGTAATAAATTTATGAATGAACTGATTTGATTTCTTATTCAATGTTGTCTTCCTAGGTTCACACACATGCCTGTGCATGCTTTTGTAATTGGCTTGCCTGGTTTCAGTATATACAATTTGGTTTGATGTATGTATGGCTTTAAGGCTTTGTTTGCAAAACTTACATGATTTTATTGGTATACATCTAGTTTTTATTGGAGAGGAGTTGGGCTGATACAGATTCTCTCTTTCTATCCGAAAGATCTTTTTGTGTCTGAAAGCTCACTTGCTCAAGTAAA_-_ATGCCAGAAATAGCTTCAGAACTGCATAAGGGGTTGTTGTTAAAGCACAAAGAAACCCACAATCTCAGCAATTATGATAATATAGATAACAGTATGCTGATTCATGGAGAAGGGGACCAGTCAGAGATCCAATTCCATGATGGACTTAGTTTTTCCCAATTCATGGTAGCTGGCTCAATTGCTGGCATGGTAGAGCATATGGCTATGTTTCCTATTGACACCTTGAAAACTCGAATGCAAATGTTGGCTACATCGGGTGGTTCTGCTCATGCGGCTGTGGGTAGAGCCCTAAAGTCCATAGTGAAATCAGAGGGGCCTCTGGGTCTCTATAGGGGTATTGGAGCAATGGGTTTGGGAGCTGGACCTGCTCATGCTGTATATTTCTCTGTATATGAGACTTGCAAGGAGAAAATGGGAGGTAACAGACGTGGTCACCATCCTTTTGCCCATGCAGCATCTGGAGTTTTAGCCACCATTGCAAGTGATGCAGTTTTTACTCCCATGGATGTAGTGAAGCAGAGGCTGCAGCTCAGAAACAGCCCATATGGAGGAGTAATGGATTGCATCAAAAGGATTTTGAGGGAAGAGGGGTTTAGAGCTTTTTATGCATCCTATAGAACTACAGTGGTAATGAATGCCCCTTTCACTGCTGTCCACTTTGCAACTTATGAAGCAGTGAAGAAAATTCTGAGTAGAATTTCTCCTGAAAATGCAACCGAAGAGCACCTCCTTGTTCATATAGGTGCTGGTGGTGCGGCTGGAGCATTGGCAAGTGCTGTGACAACACCTCTTGATGTTGTAAAGACTCGTTTGCAGTGCCAGGGAGTTTGTGGCGCAGATAGATTCAGTAGTAGCTCAATAAGTGATGTTGTGGGAAAAATAGTAAGAAAAGAGGGACCTTCAGCTCTGATGAGAGGGTTGAAGCCTAGAATATTGTTTCATGCACCTGCAGCAGCCATTTGCTGGTCTACATATGAAGCAAGTAAGACCTTTCTGCATAATGTGAACCAAGCTGCAGCTCGAGTATAG___AGCTTACAGAGTTCCTCTAAATAAGTGATCCCTTGATTTTCCTGTCAAAGGGAGTACAATTATCTCATTGTAGCTCTTCGTCGAATTACGTATAATTTATACCTATGCATTTCTGAGAAATATCTAAGGGCATGCTATCTGATTTGTGTGTACATCCCCATCAATATTAATAAAAAATTAAAGCATCAAATTTAC

Fln Alignment:

Contig702___MLIHGEGDQSEIQFHDGLSFSQFMVAGSIAGMVEHMAMFPIDTLKTRMQMLATSGGSAHAAVGRALKSIVKSEGPLGLYRGIGAMGLGAGPAHAVYFSVYETCKEKMGGNRRGHHPFAHAASGVLATIASDAVFTPMDVVKQRLQLRNSPYGGVMDCIKRILREEGFRAFYASYRTTVVMNAPFTAVHFATYEAVKKILSRISPENATEEHLLVHIXXXXXXXXXXXAVTTPLDVVKTRLQCQGVCGADRFSSSSISDVVGKIVRKEGPSALMRGLKPRILFHAPAAAICWSTYEASKTFLHNVNQAAARV
A9NYQ1_____________MLIHGEGDQSEIQLHDGLSFAQFMVAGSIAGMVEHMAMFPIDTLKTRMQMLARSGGSVHSAVGRALKSIVQSEGPLGLYRGIGAMGLGAGPAHAVYFSVYETCKEKMGGNRRGHHPFAHAASGVIATIASDAVFTPMDVVKQRLQLRNSPYGGVMDCIKKILREEGFRAFYASYRTTVVMNAPFTAVHFATYEAVKKILNRISPENATEEHLLVHIGAGGTAGALASAVTTPLDVVKTRLQCQGVCGADRFTNSSISDVVRKIVRKEGPAALMRGLKPRILFHAPAAAICWSTYEASKTFLHNVNQAAARV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
638	11			88	0.923564
645	10			90	0.90298
646		90	10		0.90298
647	90		10		0.90298
756	12	87			0.992554
757		12		87	0.992554
759	87			12	0.992554
760	87			12	0.992554
776	14			85	0.993533
918	66	33			0.997452
1027	90			10	0.90298
1133		54		45	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain